CFD validation using in-vitro MRI velocity data – Methods for data matching and CFD error quantification

Currently available small diameter vascular conduits present several long-term limitations, which has prevented their full clinical implementation. Commercially available vascular grafts show no regenerative capabilities and eventually require surgical replacement; therefore, it is of great interest to develop alternative regenerative vascular grafts (RVG). Decellularized Small Intestinal Submucosa (SIS) is an attractive material for RVG, however, the evaluation of the performance of these grafts is challenging due to the absence of devices that mimic the conditions found in vivo. Thereby, the objective of this study is to design, manufacture and validate in silico and in vitro, a novel fluidic system for the evaluation of human umbilical vein endothelial cells (HUVECs) proliferation on SIS-based RVG under dynamical conditions. Our perfusion and rotational fluidic system was designed in Autodesk Inventor 2018. In silico Computational Fluid Dynamics (CFD) validation of the system was carried out using Ansys Fluent software from ANSYS, Inc for dynamical conditions of a pulsatile pressure function measured experimentally over a rigid wall model. Mechanical and biological parameters such as flow regime, pressure gradient, wall shear stress (WSS), sterility and indirect cell viability (MTT assay) were also evaluated. Cell adhesion was confirmed by SEM imaging. The fluid flow regime within the system remains laminar. The system maintained sterility and showed low cytotoxicity levels. HUVECs were successfully cultured on SIS-based RVG under both perfusion and rotation conditions. In silico analysis agreed well with our experimental and theoretical results, and with recent in vitro and in vivo reports for WSS. The system presented is a tool for evaluating RVG and represents an alternative to develop new methods and protocols for a more comprehensive study of regenerative cardiovascular devices.

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In vitro verification of myocardial motion tracking from phase–contrast velocity data

Magnetic Resonance Imaging ◽

10.1016/s0730-725x(98)00100-3 ◽

1998 ◽

Vol 16 (8) ◽

pp. 863-870 ◽

Cited By ~ 33

Author(s):

Maria Drangova ◽

Yudong Zhu ◽

Brett Bowman ◽

Norbert J. Pelc

Keyword(s):

Phase Contrast ◽

Motion Tracking ◽

Velocity Data ◽

Myocardial Motion

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Flow in a Simple Model Skeletal Muscle Ventricle: Comparison Between Numerical and Physical Simulations

Journal of Biomechanical Engineering ◽

10.1115/1.2796058 ◽

1997 ◽

Vol 119 (1) ◽

pp. 13-19 ◽

Cited By ~ 10

Author(s):

F. S. Henry ◽

A. P. Shortland ◽

F. Iudicello ◽

R. A. Black ◽

J. C. Jarvis ◽

...

Keyword(s):

Skeletal Muscle ◽

Shear Stress ◽

Numerical Solutions ◽

Vortex Formation ◽

Velocity Data ◽

Radial Extent ◽

Physical Simulations ◽

Filling Phase ◽

Ventricular Filling

Flow patterns generated during ventricular filling have been investigated for three different combinations of flow rate and injection volume. The numerical solutions from a commercially available computational fluid dynamics package were compared with observations made under identical flow conditions in a physical model for the purpose of code validation. Particle pathlines were generated from the numerical velocity data and compared with corresponding flow-visualization pictures. A vortex formed at the inlet to the ventricle in both cases: During the filling phase, the vortex expanded and traveled toward the apex of the ventricle until, at the end of filling, the vortex occupied the full radial extent of the ventricle; the vortex continued to travel once the filling process had ended. The vortices in vitro were more circular in shape and occupied a smaller volume than those generated by the numerical model. Nevertheless, comparison of the trajectories of the vortex centres showed that there was good agreement for the three conditions studied. Postprocessing of velocity data from the numerical solution yielded wall shear-stress measurements and particle pathlines that clearly illustrate the mass-transport qualities of the traveling vortex structure. For the cases considered here, the vortex transit produced a time-dependent shear stress distribution that had a peak value of 20 dynes cm−2, with substantially lower levels of shear stress in those regions not reached by the traveling vortex. We suggest that vortex formation and travel could reduce the residence time of fluid within a skeletal muscle ventricle, provided that the vortex travels the complete length of the ventricle before fluid is ejected at the start of the next cycle.

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Three-Dimensional Velocity Field Reconstruction

Journal of Biomechanical Engineering ◽

10.1115/1.1824117 ◽

2004 ◽

Vol 126 (6) ◽

pp. 727-735 ◽

Cited By ~ 22

Author(s):

David Frakes ◽

Mark Smith ◽

Diane de Ze´licourt ◽

Kerem Pekkan ◽

Ajit Yoganathan

Keyword(s):

Velocity Field ◽

Three Dimensional ◽

Flow Fields ◽

In Vitro Models ◽

Study Data ◽

Velocity Data ◽

Field Reconstruction ◽

Grid Interpolation

The problem of inter-slice magnetic resonance (MR) image reconstruction is encountered often in medical imaging applications. In such scenarios, there is a need to approximate information not captured in contiguously acquired MR images due to hardware sampling limitations. In the context of velocity field reconstruction, these data are required for visualization and computational analyses of flow fields to be effective. To provide more complete velocity information, a method has been developed for the reconstruction of flow fields based on adaptive control grid interpolation (ACGI). In this study, data for reconstruction were acquired via MRI from in vitro models of surgically corrected pediatric cardiac vasculatures. Reconstructed velocity fields showed strong qualitative agreement with those obtained via other acquisition techniques. Quantitatively, reconstruction was shown to produce data of comparable quality to accepted velocity data acquisition methods. Results indicate that ACGI-based velocity field reconstruction is capable of producing information suitable for a variety of applications demanding three-dimensional in vivo velocity data.

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Can the Olive Genome Be a Miracle for Human DNA?

10.21203/rs.3.rs-557479/v1 ◽

2021 ◽

Author(s):

Muhammet ŞENKAL ◽

Ibrahim Akalin

Keyword(s):

Human Genome ◽

Wild Type ◽

Plant Genomes ◽

Beneficial Effects ◽

Cancer Pathways ◽

Data Matching ◽

Human Dna ◽

Restriction Sites ◽

Blast Database

Abstract We aimed to compare the human genome with the olive genome on the hypothetical context of whether or not any human-plant genomic alignment similarities could give rise to genomic bioavailability when consumed likewise carbohydrates, proteins, fats. Many studies from past to present have shown beneficial effects of olives on cardiovascular diseases and some cancer pathways. Moreover, scientific and even religious resources highlighted the importance of the olive. In our project, we aligned the olive genome with the human genome in Pubmed Blast database. We detected several genes has had 100 percent matching sequences where pathological and non-pathological variations were identified in the human genome. Interestingly wild type variations were observed in the olive genome and those matching regions were consuming restriction sites. In our data, matching regions at cardiovascular and cancer-related genes could suggest a possible bioavailability of plant genomes even in vitro. Further studies, comparing other plant genomes with the human genome would beget more promising results.

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Ultrastructural Investigations of the Contractile Filaments of Amoebae

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100050950 ◽

1974 ◽

Vol 32 ◽

pp. 188-189

Author(s):

P.L. Moore

Keyword(s):

Cytoplasmic Streaming ◽

Three Dimensional ◽

Freeze Fracture ◽

Amoeboid Movement ◽

Different Types ◽

Chemical Conditions ◽

Complete Interpretation

Previous freeze fracture results on the intact giant, amoeba Chaos carolinensis indicated the presence of a fibrillar arrangement of filaments within the cytoplasm. A complete interpretation of the three dimensional ultrastructure of these structures, and their possible role in amoeboid movement was not possible, since comparable results could not be obtained with conventional fixation of intact amoebae. Progress in interpreting the freeze fracture images of amoebae required a more thorough understanding of the different types of filaments present in amoebae, and of the ways in which they could be organized while remaining functional.The recent development of a calcium sensitive, demembranated, amoeboid model of Chaos carolinensis has made it possible to achieve a better understanding of such functional arrangements of amoeboid filaments. In these models the motility of demembranated cytoplasm can be controlled in vitro, and the chemical conditions necessary for contractility, and cytoplasmic streaming can be investigated. It is clear from these studies that “fibrils” exist in amoeboid models, and that they are capable of contracting along their length under conditions similar to those which cause contraction in vertebrate muscles.

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In Vitro Induction of Crystals of MT Protein by Vinblastine-Colcemid in Mouse Spermatids

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100050676 ◽

1974 ◽

Vol 32 ◽

pp. 132-133

Author(s):

John J. Wolosewick ◽

John H. D. Bryan

Keyword(s):

Endoplasmic Reticulum ◽

Smooth Endoplasmic Reticulum ◽

Nuclear Ring ◽

Rough Er ◽

Distal Direction ◽

In Vitro Induction

Early in spermiogenesis the manchette is rapidly assembled in a distal direction from the nuclear-ring-densities. The association of vesicles of smooth endoplasmic reticulum (SER) and the manchette microtubules (MTS) has been reported. In the mouse, osmophilic densities at the distal ends of the manchette are the organizing centers (MTOCS), and are associated with the SER. Rapid MT assembly and the lack of rough ER suggests that there is an existing pool of MT protein. Colcemid potentiates the reaction of vinblastine with tubulin and was used in this investigation to detect this protein.

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Induction and Differentiation of Dental Epithelium in Vivo and in Vitro

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100053425 ◽

1982 ◽

Vol 40 ◽

pp. 142-145

Author(s):

E. J. Kollar

Keyword(s):

Connective Tissue ◽

Oral Mucosa ◽

Basal Lamina ◽

Functional Derivatives ◽

Specific Source ◽

Dental Epithelium ◽

Connective Tissue Stroma

The differentiation and maintenance of many specialized epithelial structures are dependent on the underlying connective tissue stroma and on an intact basal lamina. These requirements are especially stringent in the development and maintenance of the skin and oral mucosa. The keratinization patterns of thin or thick cornified layers as well as the appearance of specialized functional derivatives such as hair and teeth can be correlated with the specific source of stroma which supports these differentiated expressions.

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Immunoenzymatic demonstration of the simultaneous presence of transferrin, hemopexin and albumin in a same hepatocyte and their ultrastructural localization

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100081309 ◽

1978 ◽

Vol 36 (2) ◽

pp. 88-89

Author(s):

M. Kraemer ◽

J. Foucrier ◽

J. Vassy ◽

M.T. Chalumeau

Keyword(s):

Plasma Proteins ◽

Rat Hepatocytes ◽

Ultrastructural Localization ◽

Carrier Proteins ◽

Normal Cells ◽

Adult Rat ◽

Adult Rat Hepatocytes ◽

Monospecific Antisera ◽

Different Levels

Some authors using immunofluorescent techniques had already suggested that some hepatocytes are able to synthetize several plasma proteins. In vitro studies on normal cells or on cells issued of murine hepatomas raise the same conclusion. These works could be indications of an hepatocyte functionnal non-specialization, meanwhile the authors never give direct topographic proofs suitable with this hypothesis.The use of immunoenzymatic techniques after obtention of monospecific antisera had seemed to us useful to bring forward a better knowledge of this problem. We have studied three carrier proteins (transferrin = Tf, hemopexin = Hx, albumin = Alb) operating at different levels in iron metabolism by demonstrating and localizing the adult rat hepatocytes involved in their synthesis.Immunological, histological and ultrastructural methods have been described in a previous work.

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Sem Studies of Co-Cr-Mo Surgical Implant Alloy Corrosion Behavior

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100055448 ◽

1982 ◽

Vol 40 ◽

pp. 520-521

Author(s):

Ann Chidester Van Orden ◽

John L. Chidester ◽

Anna C. Fraker ◽

Pei Sung

Keyword(s):

Electron Microscopy ◽

Corrosion Behavior ◽

Anodic Polarization ◽

Saline Solution ◽

Saturated Calomel Electrode ◽

Physiological Saline ◽

X Ray ◽

Physiological Saline Solution ◽

Scanning Electron

The influence of small variations in the composition on the corrosion behavior of Co-Cr-Mo alloys has been studied using scanning electron microscopy (SEM), energy dispersive x-ray analysis (EDX), and electrochemical measurements. SEM and EDX data were correlated with data from in vitro corrosion measurements involving repassivation and also potentiostatic anodic polarization measurements. Specimens studied included the four alloys shown in Table 1. Corrosion tests were conducted in Hanks' physiological saline solution which has a pH of 7.4 and was held at a temperature of 37°C. Specimens were mechanically polished to a surface finish with 0.05 µm A1203, then exposed to the solution and anodically polarized at a rate of 0.006 v/min. All voltages were measured vs. the saturated calomel electrode (s.c.e.).. Specimens had breakdown potentials near 0.47V vs. s.c.e.

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