The genetic relationships of Indian jujube (Ziziphus mauritiana Lam.) cultivars using SSR markers

In this study, SRAP and SSR markers were employed to determine genetic relationships among 42 persimmon genotypes (Diospyros kaki Thunb) obtained from Hatay province and 3 persimmon cultivars, 2 of which belong to Diospyros kaki Thunb and one belongs to Diospyros oleifera Cheng. Genetic relationships were determined by using a total of 29 molecular DNA primers (SRAP and SSR). Of these primers, 21 SRAP primer combinations produced a total of 107 bands and 77.6% of them were polymorphic; 8 SSR primers produced 26 polymorphic bands with an average polymorphism ratio of 84.6%. The SRAP and SSR markers produced 4.6 bands as average and the number of bands produced per marker was calculated as 3.6. The lowest similarity was observed between MK-113 (Diospyros oleifera Cheng) and the other genotypes all belongs to Diospyros kaki Thunb (with similarity ratios of 0.41-0.69 for SRAP primers, between 0.25-0.67 for SSR primers). The genotypes/cultivars belongs to Diospyros kaki had similarity ratio between 0.98-1.00 according to SRAP and SSR markers. This synonym or similarity could be results of clonal propagation rather than autogamy.

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Determination of genetic relationships among elite thermosensitive genic male sterile lines (TGMS) of rice (Oryza sativa L.) employing morphological and simple sequence repeat (SSR) markers

Journal of Genetics ◽

10.1007/s12041-011-0018-5 ◽

2011 ◽

Vol 90 (1) ◽

pp. 11-19 ◽

Cited By ~ 8

Author(s):

VIKAS KUMAR SINGH ◽

PRITI UPADHYAY ◽

PALLAVI SINHA ◽

ASHISH KUMAR MALL ◽

SANJAY KUMAR JAISWAL ◽

...

Keyword(s):

Oryza Sativa ◽

Ssr Markers ◽

Simple Sequence Repeat ◽

Oryza Sativa L ◽

Genetic Relationships ◽

Sequence Repeat ◽

Male Sterile ◽

Simple Sequence

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Adsorption of Copper Ions (Cu++) in Aqueous Solution Using Activated Carbon and Biosorbent from Indian Jujube (Ziziphus mauritiana) Seed Hulls

Chemical Science International Journal ◽

10.9734/csji/2020/v29i530177 ◽

2020 ◽

pp. 13-24

Author(s):

Harouna Massai ◽

Djakba Raphael ◽

Mouhamadou Sali

Keyword(s):

Aqueous Solution ◽

Activated Carbon ◽

Copper Ions ◽

Carbon Powder ◽

Ziziphus Mauritiana ◽

Batch Mode ◽

Freundlich Model ◽

Jar Test ◽

Standard Procedures ◽

Indian Jujube

The present work aimed at mitigating the level of copper ions (Cu++) by adsorption in aqueous solution using activated carbon powder (AC) and biosorbent (BS) from the Indian jujube seed hulls. The AC and BS were prepared from the Indian jujube seed hulls and characterized using standard procedures. In addition, the adsorption effects of Indian jujube seed hulls through the AC and BS were carried out using jar test experiment (batch mode) at different pH (1, 2, 3, and 4), ionic strengths (100-600 mg/L) and stirring speed (120rpm). Therefore, it was found that the adsorption time at equilibrium were 10 and 5 minutes respectively for the AC and the BS. Furthermore, it was found that the reduction of copper ions were 99.40% and 73.08% for aqueous solutions of 100 ppm and 500 ppm respectively at the equilibrium state. It was also revealed that when the mass of the AC or the BS increases, the quantities of ions adsorbed per gram decrease. The maximum pH of adsorption for the AC was found to be pH=1, while it was found to be pH=4 for the BS. The Freundlich model indicated that the adsorption of copper ions by the Indian jujube is linear while the Temkin and Dubinin-Kagana-Radushkevich models described the adsorption as a physical reaction. It was finally observed that the adsorption of copper ions by the AC and the BS from Indian jujube seed hulls influenced by the addition of some concentration of NaCl.

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Cross Species/Genera Transferability of SSR Markers, Genetic Diversity and Population Structure Analysis in Gladiolus (Gladiolus × grandiflorus L.) Genotypes

10.21203/rs.3.rs-673512/v1 ◽

2021 ◽

Author(s):

Varun Hiremath ◽

Kanwar Pal Singh ◽

Neelu Jain ◽

Kishan Swaroop ◽

Pradeep Kumar Jain ◽

...

Keyword(s):

Genetic Diversity ◽

Population Structure ◽

Ssr Markers ◽

Structure Analysis ◽

Genetic Relationships ◽

Crop Improvement ◽

Test Analysis ◽

Average Value ◽

Population Structure Analysis ◽

Genetic Diversity And Structure

Abstract Genetic diversity and structure analysis using molecular markers is necessary for efficient utilization and sustainable management of gladiolus germplasm. Genetic analysis of gladiolus germplasm using SSR markers is largely missing due to scarce genomic information. In the present investigation, we report 66.66% cross transferability of Gladiolus palustris SSRs whereas 48% of Iris EST-SSRs were cross transferable across the gladiolus genotypes used in the study. A total of 17 highly polymorphic SSRs revealed a total 58 polymorphic loci ranging from two to six in each locus with an average of 3.41 alleles per marker. PIC values ranged from 0.11 to 0.71 with an average value of 0.48. Four SSRs were selectively neutral based on Ewens-Watterson test. Analysis of genetic structure of 84 gladiolus genotypes divided whole germplasm into two subpopulations. 35 genotypes were assigned to subpopulation 1 whereas 37 to subpopulation 2 and rest of the genotypes recorded as admixture. Analysis of molecular variance indicated maximum variance (53.59%) among individuals within subpopulations whereas 36.55% of variation observed among individuals within total population. Least variation (9.86%) was noticed between two subpopulations. Moderate (FST = 0.10) genetic differentiation of two subpopulations was observed. Grouping pattern of population structure was consistent with UPGMA dendrogram based on simple matching dissimilarity coefficient (ranged from 01.6 to 0.89) and PCoA. Genetic relationships assessed among the genotypes of respective clusters assist the breeders in selecting desirable parents for crossing. SSR markers from present study can be utilized for cultivar identification, conservation and sustainable utilization of gladiolus genotypes for crop improvement.

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Molecular Diversity Analysis in Boro Rice (Oryza sativa L.) Landraces using SSR Markers

Asian Journal of Biology ◽

10.9734/ajob/2021/v12i130156 ◽

2021 ◽

pp. 36-48

Author(s):

Farhana Afrin Vabna ◽

Mohammad Zahidul Islam ◽

Md. Ferdous Rezwan Khan Prince ◽

Md. Ekramul Hoque

Keyword(s):

Genetic Diversity ◽

Ssr Markers ◽

Molecular Diversity ◽

Genetic Relationships ◽

Group Method ◽

Diversity Analysis ◽

Average Value ◽

Rice Landraces ◽

Boro Rice ◽

Research Institute

Aims: The aim of the study was to determine the genetic diversity of twenty four Boro rice landraces using rice genome specific twelve well known SSR markers. Study Design: Genomic DNA extraction, PCR amplification, Polyacrylamide gel electrophoresis (PAGE) and data analysis-these steps were followed to perform the research work. Data was analysed with the help of following software; POWERMAKER version 3.25, AlphaEaseFC (Alpha Innotech Corporation) version 4.0. UPGMA dendrogram was constructed using MEGA 5.1 software. Place and Duration of Study: The study was conducted at the Genetic Resources and Seed Division (GRSD), Bangladesh Rice Research Institute (BRRI), Joydebpur, Gazipur, Bangladesh during the period of November 2017 to March 2018. Methodology: Simple Sequence Repeat (SSR) markers were used to assay 24 landraces of Boro rice collected from the Gene Bank of Bangladesh Rice Research Institute (BRRI). Results: A total fifty four (54) alleles were detected, out of which forty five (45) polymorphic alleles were identified. The Polymorphic Information Content (PIC) of SSR markers ranged from 0.08 (RM447) to 0.84 (RM206) with an average value of PIC = 0.49. Gene diversity ranges from 0.08 (RM447) to 0.86 (RM206) with an average value of 0.52. The RM206 marker can be considered as the best marker among the studied markers for 24 rice landraces. Dendrogram based on Nei’s genetic distance using Unweighted Pair Group Method of Arithmetic Mean (UPGMA) indicated the segregation of 24 genotypes into three main clusters. Conclusion: The result revealed that SSR markers are very effective tools in the study of genetic diversity and genetic relationships and this result can be conveniently used for further molecular diversity analysis of rice genotypes to identify diverse parent for the development of high yielding variety in rice.

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Research Article ISSR and SSR markers for determining genetic relationships among three wild species of Passiflora

Genetics and Molecular Research ◽

10.4238/gmr18040 ◽

2019 ◽

Vol 18 (1) ◽

Author(s):

L.S. Vianna ◽

T.N.S. Pereira ◽

E.A. Santos ◽

A.P. Viana ◽

M.G. Pereira ◽

...

Keyword(s):

Ssr Markers ◽

Wild Species ◽

Genetic Relationships ◽

Research Article

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Genetic diversity among silkworm (Bombyx mori L., Lep., Bombycidae) germplasms revealed by microsatellites

Genome ◽

10.1139/g05-053 ◽

2005 ◽

Vol 48 (5) ◽

pp. 802-810 ◽

Cited By ~ 30

Author(s):

Muwang Li ◽

Li Shen ◽

Anying Xu ◽

Xuexia Miao ◽

Chengxiang Hou ◽

...

Keyword(s):

Genetic Diversity ◽

Bombyx Mori ◽

Ssr Markers ◽

Simple Sequence Repeat ◽

Genetic Relationships ◽

Group Method ◽

Sequence Repeat ◽

Bombyx Mori L ◽

Simple Sequence ◽

Silkworm Bombyx Mori

To determine genetic relationships among strains of silkworm, Bombyx mori L., 31 strains with different origins, number of generations per year, number of molts per generation, and morphological characters were studied using simple sequence repeat (SSR) markers. Twenty-six primer pairs flanking microsatellite sequences in the silkworm genome were assayed. All were polymorphic and unambiguously separated silkworm strains from each other. A total of 188 alleles were detected with a mean value of 7.2 alleles/locus (range 2–17). The average heterozygosity value for each SSR locus ranged from 0 to 0.60, and the highest one was 0.96 (Fl0516 in 4013). The mean polymorphism index content (PIC) was 0.66 (range 0.12–0.89). Unweighted pair group method with arithmetic means (UPGMA) cluster analysis of Nei's genetic distance grouped silkworm strains based on their origin. Seven major ecotypic silkworm groups were analyzed. Principal components analysis (PCA) for SSR data support their UPGMA clustering. The results indicated that SSR markers are an efficient tool for fingerprinting cultivars and conducting genetic-diversity studies in the silkworm.Key words: silkworm, Bombyx mori L., microsatellites, simple sequence repeat (SSR), genetic diversity.

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