Isolation of an IncP-1 plasmid harbouring mcr-1 from a chicken isolate of Citrobacter braakii in China

2018 ◽  
Vol 51 (6) ◽  
pp. 936-940 ◽  
Author(s):  
Jinxin Liu ◽  
Yanxian Yang ◽  
Yunxia Li ◽  
Dan Liu ◽  
Hongmei Tuo ◽  
...  
Keyword(s):  
2020 ◽  
Author(s):  
Abdulkarim Shwani ◽  
Pamela R. F. Adkins ◽  
Nnamdi S. Ekesi ◽  
Adnan Alrubaye ◽  
Michael J. Calcutt ◽  
...  

AbstractS. agnetis has been previously associated with subclinical or clinically mild cases of mastitis in dairy cattle and is one of several Staphylococcal species that have been isolated from the bone and blood of lame broilers. We were the first to report that S. agnetis could be obtained frequently from bacterial chondronecrosis with osteomyelitis (BCO) lesions of lame broilers. Further, we showed that a particular isolate of S. agnetis, chicken isolate 908, can induce lameness in over 50% of exposed chickens, far exceeding normal BCO incidences in broiler operations. We have previously reported the assembly and annotation of the genome of isolate 908. To better understand the relationship between dairy cattle and broiler isolates, we assembled 11 additional genomes for S. agnetis isolates, including an additional chicken BCO strain, and ten isolates from milk, mammary gland secretions or udder skin, from the collection at the University of Missouri. To trace phylogenetic relationships, we constructed phylogenetic trees based on multi-locus sequence typing, and Genome-to-Genome Distance Comparisons. Chicken isolate 908 clustered with two of the cattle isolates along with three isolates from chickens in Denmark and an isolate of S. agnetis we isolated from a BCO lesion on a commercial broiler farm in Arkansas. We used a number of BLAST tools to compare the chicken isolates to those from cattle and identified 98 coding sequences distinguishing isolate 908 from the cattle isolates. None of the identified genes explain the differences in host or tissue tropism. These analyses are critical to understanding how Staphylococci colonize and infect different hosts and potentially how they can transition to alternative niches (bone vs dermis).ImportanceStaphylococcus agnetis has been recently recognized as associated with disease in dairy cattle and meat type chickens. The infections appear to be limited in cattle and systemic in broilers. This report details the molecular relationships between cattle and chicken isolates in order to understand how this recently recognized species infects different hosts with different disease manifestations. The data show the chicken and cattle isolates are very closely related but the chicken isolates all cluster together suggesting a single jump from cattle to chickens.


2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Vlad A. Ungureanu ◽  
Alexandros Ch. Stratakos ◽  
Ozan Gundogdu ◽  
Lavinia Stef ◽  
Ioan Pet ◽  
...  

1970 ◽  
Vol 1 (1) ◽  
pp. 9-13 ◽  
Author(s):  
MA Islam ◽  
MA Samad ◽  
MB Rahman ◽  
SML Kabir

Clinicopathological changes of duck cholera were studied in 16-week-old 10 susceptible ( PHA titre≤8.00 ) Jinding breed ducks during the period from October 2002 to March 2003. Each of the experimental duck was inoculated with a virulent chicken isolate of Pasteurella multocida @ 5.4 x 106 CFU / ml per bird intramuscularly. The incubation period varied from 12 to 48 hours with 100% mortality rate between 24 to 72 hours of infection. These affected ducks showed clinical signs of fever, anorexia, dullness, depression, ruffled feathers, severe weakness, drowsiness, whitish diarrhoea with mucus, exudation from eyes, lameness and unable to hold the head with beak touching the ground before death. Necropsy examination of the dead ducks showed septicaemic conditions, blood vascular congestion, haemorrhagic enteritis, increased amount of pericardial and peritoneal fluids, swollen and sometimes congested liver with multiple necrotic foci on the parietal surface, enlarged and edematous heart with echymotic haemorrhages. Trachea and lungs were severely congested and haemorrhagic and serofibrinous exudates were seen in the lung, liver and heart. The P. multocida organism was reisolated from the swabs of liver and heart of all the dead ducks by standard bacteriological techniques. This study was confirmed the virulence and pathogenicity of chicken isolate of P. multocida in ducks.Key words: Experimental infection; Duck cholera; pathogenicity; clinicopathological changes DOI = 10.3329/bjvm.v1i1.1910 Bangl. J. Vet. Med. (2008). 1(1): 09-13


Author(s):  
Hazem Ramadan ◽  
Ahmed M. Soliman ◽  
Lari M. Hiott ◽  
Mohammed Elbediwi ◽  
Tiffanie A. Woodley ◽  
...  

In this study, multidrug-resistant (MDR) Escherichia coli isolates from retail food and humans assigned into similar Multilocus Sequence Types (MLST) were analyzed using whole genome sequencing (WGS). In silico analysis of assembled sequences revealed the existence of multiple resistance genes among the examined E. coli isolates. Of the six CTX-M-producing isolates from retail food, blaCTX-M-14 was the prevalent variant identified (83.3%, 5/6). Two plasmid-mediated fosfomycin resistance genes, fosA3, and fosA4, were detected from retail food isolates (one each from chicken and beef), where fosA4 was identified in the chicken isolate 82CH that also carried the colistin resistance gene mcr-1. The blaCTX-M-14 and fosA genes in retail food isolates were located adjacent to insertion sequences ISEcp1 and IS26, respectively. Sequence analysis of the reconstructed mcr-1 plasmid (p82CH) showed 96–97% identity to mcr-1-carrying IncI2 plasmids previously identified in human and food E. coli isolates from Egypt. Hierarchical clustering of core genome MLST (HierCC) revealed clustering of chicken isolate 82CH, co-harboring mcr-1 and fosA4 genes, with a chicken E. coli isolate from China at the HC200 level (≤200 core genome allelic differences). As E. coli co-harboring mcr-1 and fosA4 genes has only been recently reported, this study shows rapid spread of this genotype that shares similar genetic structures with regional and international E. coli lineages originating from both humans and food animals. Adopting WGS-based surveillance system is warranted to facilitate monitoring the international spread of MDR pathogens.


2012 ◽  
Vol 19 (1) ◽  
pp. 23-29 ◽  
Author(s):  
Yemisi Olukemi Adesiji ◽  
Racheal Adekemi Akanni ◽  
Olusegun Adelowo Adefioye ◽  
Sunday Samuel Taiwo

Background: There are increasing reports of resistance to current antibiotics employed in treatment of Arcobacter related infections. Materials and Methods: Carica papaya, Vernonia amygdalina, Ocimum gratissimum and Momordica charantia were tested against A. butzleri reference strain (ABSH3-1137) and A. cryaerophilus isolated from pig and chicken using disk diffusion technique. Results: The aqueous extract of C. papaya inhibited the growth of A. butzleri at inhibitory dose (ID) of 0.5 mg and the two A. cryaerophilus at ID of 1 mg while the methanol extract did not inhibit the growth of any strains. The aqueous and methanol extracts of V. amygdalina inhibited the growth of A. cryaerophilus isolated from pig and chicken at ID of 10 mg but did not inhibit A. butzleri. The methanol extracts of O. gratissimum inhibited A. butzleri and A. cryaerophilus pig isolate at ID of 2.5 mg and the chicken isolate at ID of 1 mg. The aqueous extracts of O. gratissimum inhibited A. butzleri, A. cryaerophilus of chicken isolate at ID of 5 mg, and A. cryaerophilus of pig isolate at 2.5 mg. The methanol extracts of M. charantia had ID of 2.5 mg for A. butzleri and A. cryaerophilus pig isolate and ID of 1 mg for A. cryaerophilus chicken isolate while the aqueous extracts had ID of 5 mg for all the three strains tested. Conclusions: The result obtained from this study showed that both aqueous and methanol extracts of four commonly used herbs in Nigeria inhibited the growth of Arcobacter species to a varying degree with the aqueous extract of C. papaya leaves reported in vitro highest antimicrob­ial activity and thereby may serve as potential sources for new antimicrob­ial agents against Arcobacter.


2019 ◽  
Author(s):  
Bilal Alrubaye ◽  
Mussie Abraha ◽  
Ayidh Almansour ◽  
Mohit Bansal ◽  
Hong Wang ◽  
...  

ABSTRACTDespite reducing the prevalent foodborne pathogenCampylobacter jejuniin chickens decreases campylobacteriosis, few effective approaches are available. The aim of this study was to use microbial metabolic product bile acids to reduceC. jejunichicken colonization. Broiler chicks were fed with deoxycholic acid (DCA), lithocholic acid (LCA), or ursodeoxycholic acid (UDCA). The birds were also transplanted with DCA modulated anaerobes (DCA-Anaero) or aerobes (DCA-Aero). The birds were infected with human clinical isolateC. jejuni81-176 or chicken isolateC. jejuniAR101. Notably,C. jejuni81-176 was readily colonized intestinal tract at d16 and reached an almost plateau at d21. Remarkably, DCA excludedC. jejunicecal colonization at 100, 99.997, and 100% at 16, 21, and 28 days of age. Neither chicken ages of infection nor LCA or UDCA alteredC. jejuniAR101 chicken colonization level, while DCA reduced 91% of the bacterium in chickens at d28. Notably, DCA diet reduced phylum Firmicutes but increased Bacteroidetes compared to infected control birds. Importantly, DCA-Anaero attenuated 93% ofC. jejunicolonization at d28 compared to control infected birds. In conclusion, DCA shapes microbiota composition againstC. jejunicolonization in chickens, suggesting a bidirectional interaction between microbiota and microbial metabolites.


2005 ◽  
Vol 86 (2) ◽  
pp. 423-433 ◽  
Author(s):  
Pilaipan Puthavathana ◽  
Prasert Auewarakul ◽  
Pakapak Chor Charoenying ◽  
Kantima Sangsiriwut ◽  
Phisanu Pooruk ◽  
...  

The complete genomes of three human H5N1 influenza isolates were characterized, together with the haemagglutinin (HA) and neuraminidase (NA) genes from two additional human isolates and one chicken isolate. These six influenza isolates were obtained from four different provinces of Thailand during the avian influenza outbreak in Asia from late 2003 to May 2004. All six Thailand isolates contained multiple basic amino acids at the cleavage site in the HA gene. Amino acid residues at the receptor-binding site of the five human viruses were similar to those of the chicken virus and other H5N1 viruses from Hong Kong. The presence of amantadine resistance in the Thailand viruses isolated during this outbreak was suggested by a fixed mutation in M2 and confirmed by a phenotypic assay. All genomic segments of the Thailand viruses clustered with the recently described genotype Z. The Thailand viruses contained more avian-specific residues than the 1997 Hong Kong H5N1 viruses, suggesting that the virus may have adapted to allow a more efficient spread in avian species.


2010 ◽  
Vol 192 (13) ◽  
pp. 3547-3548 ◽  
Author(s):  
Teija Ojala ◽  
Veera Kuparinen ◽  
J. Patrik Koskinen ◽  
Edward Alatalo ◽  
Liisa Holm ◽  
...  

ABSTRACT Lactobacillus crispatus is a common member of the beneficial microbiota present in the vertebrate gastrointestinal and human genitourinary tracts. Here, we report the genome sequence of L. crispatus ST1, a chicken isolate displaying strong adherence to vaginal epithelial cells.


2020 ◽  
Vol 86 (12) ◽  
Author(s):  
Abdulkarim Shwani ◽  
Pamela R. F. Adkins ◽  
Nnamdi S. Ekesi ◽  
Adnan Alrubaye ◽  
Michael J. Calcutt ◽  
...  

ABSTRACT Staphylococcus agnetis has been previously associated with subclinical or clinically mild cases of mastitis in dairy cattle and is one of several staphylococcal species that have been isolated from the bones and blood of lame broilers. We reported that S. agnetis could be obtained frequently from bacterial chondronecrosis with osteomyelitis (BCO) lesions of lame broilers (A. Al-Rubaye et al., PLoS One 10:e0143336, 2015 [https://doi.org/10.1371/journal.pone.0143336]). A particular isolate, S. agnetis 908, can induce lameness in over 50% of exposed chickens, exceeding normal BCO incidences in broiler operations. We reported the assembly and annotation of the genome of isolate 908. To better understand the relationship between dairy cattle and broiler isolates, we assembled 11 additional genomes for S. agnetis isolates, an additional chicken BCO strain, and ten isolates from cattle milk, mammary gland secretions, or udder skin from the collection at the University of Missouri. To trace phylogenetic relationships, we constructed phylogenetic trees based on multilocus sequence typing and genome-to-genome distance comparisons. Chicken isolate 908 clustered with two of the cattle isolates, along with three isolates from chickens in Denmark and an isolate of S. agnetis we isolated from a BCO lesion on a commercial broiler farm in Arkansas. We used a number of BLAST tools to compare the chicken isolates to those from cattle and identified 98 coding sequences distinguishing isolate 908 from the cattle isolates. None of the identified genes explain the differences in host or tissue tropism. These analyses are critical to understanding how staphylococci colonize and infect different hosts and potentially how they can transition to alternative niches (bone versus dermis). IMPORTANCE Staphylococcus agnetis has been recently recognized as associated with disease in dairy cattle and meat-type chickens. The infections appear to be limited in cattle and systemic in broilers. This report details the molecular relationships between cattle and chicken isolates in order to understand how this recently recognized species infects different hosts with different disease manifestations. The data show that the chicken and cattle isolates are very closely related, but the chicken isolates all cluster together, suggesting a single jump from cattle to chickens.


2002 ◽  
Vol 65 (7) ◽  
pp. 1075-1080 ◽  
Author(s):  
M. E. JANES ◽  
T. COBBS ◽  
S. KOOSHESH ◽  
M. G. JOHNSON

Differences in survival and growth among five different Escherichia coli O157:H7 strains in three apple varieties were determined at various temperatures. Jonathan, Golden Delicious, and Red Delicious apples were wounded and inoculated with E. coli O157:H7 strains C7929 (apple cider isolate), 301C (chicken isolate), 204P (pork isolate), 933 (beef isolate), and 43890 (human isolate) at an initial level of 6 to 7 log CFU/g. The inoculated apples were stored at a constant temperature of 37, 25, 8, or 4°C or at 37°C for 24 h and then at 4°C, and bacterial counts were determined every week for 28 days. By day 28, for Jonathan apples at 25°C, the apple isolate counts were significantly higher than the chicken and human isolate counts. At 4°C for 28 days, the human isolate inoculated into Jonathan, Golden Delicious, and Red Delicious apples was present in significantly smaller numbers than the other strains. The apple isolate survived significantly better at 4°C, yielding the highest number of viable cells. By days 21 and 28, for apples stored at 37°C for the first 24 h and then at 4°C, the counts of viable E. coli O157: H7 apple and human isolates were 6.8 and 5.8 log CFU/g at the site of the wound, whereas for apples kept at 4°C for the duration of storage, the respective counts were 5.6 and 1.5 log CFU/g. Our study shows that E. coli O157:H7 strains responded differentially to their ability to survive in these three apple varieties at 25 or 4°C and produced higher viable counts when apples were temperature abused at 37°C for 24 h and then stored at 4°C for 27 days.


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