Genetic structure of Trypanosoma cruzi populations from Argentina estimated from enzyme polymorphism

Parasitology ◽  
1993 ◽  
Vol 107 (4) ◽  
pp. 405-410 ◽  
Author(s):  
G. M. De Luca D'oro ◽  
C. N. Gardenal ◽  
B. Perret ◽  
J. V. Crisci ◽  
E. E. Montamat
Keyword(s):  
Genetic Structure ◽  
Trypanosoma Cruzi ◽  
Geographical Origin ◽  
Enzyme Polymorphism ◽  
Data Matrix ◽  
Clonal Structure ◽  
Genetic Composition ◽  
Fixed Heterozygosity ◽  
Electrophoretic Patterns ◽  
Hardy Weinberg Equilibrium

SUMMARYIsolates of Trypanosoma cruzi from human patients, domestic and sylvatic animals and vector insects were obtained in different areas of Argentina. Electrophoretic patterns of enzymes from extracts of 95 isolates were analysed. On the basis of zymograms providing information on 10 loci, 12 zymodemes are described according to their genotypes. Data presented show fixed heterozygosity, absence of segregation of genotypes, significant departures from Hardy–Weinberg equilibrium, and over-represented genotypes. This evidence supports the hypothesis that sexual reproduction is very restricted or absent in this parasite. The proportion of polymorphic loci is 80%. The expected mean heterozygosity per locus (He) is 0·43, while the observed value (Ho) is 0·24. Differences between these values may be explained by accepting a basically clonal structure for T. cruzi. The data matrix of 12 zymodemes using 28 characters was analysed using a Wagner parsimony algorithm. Two equally most parsimonious unrooted trees were generated; both have 39 steps. The results show clusters clearly separated according to the geographical origin of the stocks. There are some indications of some correlations between genetic composition of the parasite and the clinical picture of the infection in human patients.

Contrasting patterns of genetic structure and disequilibrium in populations of a stone-cased caddisfly (Tasimiidae) from northern and southern Australia

2008 ◽  
Vol 59 (3) ◽  
pp. 235 ◽  
Author(s):  
Alicia Slater Schultheis ◽  
Richard Marchant ◽  
Jane Margaret Hughes
Keyword(s):  
Genetic Structure ◽  
Genetic Differentiation ◽  
Adult Emergence ◽  
Conclusive Evidence ◽  
Emergence Patterns ◽  
Freshwater Invertebrate ◽  
Gene Coi ◽  
Hardy Weinberg Equilibrium ◽  
New Recruits ◽  
Genetic Patchiness

In marine and freshwater invertebrate populations, microscale genetic differentiation or ‘genetic patchiness’ is thought to result from variation in the abundance and genetic composition of new recruits at a particular location. In the present study, the role of the adult emergence patterns in genetic patchiness was examined using mtDNA and two microsatellite loci to compare patterns of genetic differentiation in asynchronously (subtropical) and synchronously emerging (temperate) populations of the stone-cased caddisfly Tasimia palpata. A 550 base pair region of the mitochondrial cytochrome c oxidase subunit I gene (COI) was sequenced in at least 14 individuals from each population. Genetic structure was detected only at the reach scale in the subtropical populations and no genetic differentiation was detected in temperate populations. There were more deviations from Hardy–Weinberg equilibrium (HWE) in subtropical populations than in temperate populations where 44% and 12.5%, respectively, of tests for deviations from HWE were significant. Although distinct patterns of genetic structure and deviations from HWE were observed in the subtropical and temperate populations of T. palpata, no conclusive evidence was found to suggest that the differences are caused by differences in emergence patterns. We hypothesise that genetic patchiness must be caused by post-recruitment processes, most likely the preservation of oviposition ‘hotspots’ in subtropical streams.

scholarly journals Population Genetic Structure of Rhizoctonia oryzae-sativae from Rice in Latin America and Its Adaptive Potential to Emerge as a Pathogen on Urochloa Pastures

2017 ◽  
Vol 107 (1) ◽  
pp. 121-131 ◽  
Author(s):  
Danilo A. dos Santos Pereira ◽  
Paulo C. Ceresini ◽  
Vanina L. Castroagudín ◽  
Lina M. Ramos-Molina ◽  
Edisson Chavarro-Mesa ◽  
...  
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Reproductive System ◽  
Population Genetic ◽  
Upland Rice ◽  
Adaptive Potential ◽  
Rhizoctonia Oryzae ◽  
Hardy Weinberg Equilibrium ◽  
Two Populations ◽  
Brazilian Populations

The fungus Rhizoctonia oryzae-sativae is an important pathogen that causes the aggregated sheath spot disease on rice. In this study, we investigated the genetic structure of rice-adapted populations of R. oryzae-sativae sampled from traditional rice-cropping areas from the Paraíba Valley, São Paulo, Brazil, and from Meta, in the Colombian Llanos, in South America. We used five microsatellite loci to measure population differentiation and infer the pathogen’s reproductive system. Gene flow was detected among the three populations of R. oryzae-sativae from lowland rice in Brazil and Colombia. In contrast, a lack of gene flow was observed between the lowland and the upland rice populations of the pathogen. Evidence of sexual reproduction including low clonality, Hardy-Weinberg equilibrium within loci and gametic equilibrium between loci, indicated the predominance of a mixed reproductive system in all populations. In addition, we assessed the adaptive potential of the Brazilian populations of R. oryzae-sativae to emerge as a pathogen to Urochloa spp. (signalgrass) based on greenhouse aggressiveness assays. The Brazilian populations of R. oryzae-sativae were probably only incipiently adapted as a pathogen to Urochloa spp. Comparison between RST and QST showed the predominance of diversifying selection in the divergence between the two populations of R. oryzae-sativae from Brazil.

scholarly journals Pesticides and the evolution of the genetic structure of Anopheles coluzzii populations in some localities in Benin (West Africa)

2019 ◽  
Vol 18 (1) ◽  
Author(s):  
Arsène Jacques Y. H. Fassinou ◽  
Come Z. Koukpo ◽  
Razaki A. Ossè ◽  
Fiacre R. Agossa ◽  
Roseric Azondékon ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Genetic Differentiation ◽  
Anopheles Coluzzii ◽  
Natural Habitats ◽  
Chi Square ◽  
Agroecological Zones ◽  
Chi Square Test ◽  
Hardy Weinberg Equilibrium ◽  
Study Sites ◽  
Homozygous Resistant

Abstract Background Changes in the natural habitats of insect groups are determined the genetic polymorphisms between individuals. The objective of this study was to establish the genetic structure of the Anopheles coluzzii populations in four localities of Benin. Methods Insecticide surveys and larval sampling were conducted on 4 study localities, including Cotonou, Ketou, Zagnanado, and Sô-Ava. Molecular characterizations were performed on the Anopheles mosquitoes collected with the allelic and genotypic frequencies of kdr gene determined. The multiple comparison Chi square test for proportions was performed with R version 3.3.3. Next, the observed heterozygosity, expected heterozygosity, and indices of fixation, and genetic differentiation were estimated. Finally, the Hardy–Weinberg equilibrium (EHW) was determined to assess whether panmixia exists in the different populations of mosquitoes of the agroecological zones under study. Results Carbamates, pyrethroids, organophosphorus and organochlorines use have been reported in all localities except Sô-Ava. Anopheles coluzzii was strongly represented across all study localities. The L1014F allele was observed in the localities of Kétou, Cotonou and Zagnanado. Likewise, insecticide selection pressure of homozygous resistant individuals (L1014F/L1014F) was significantly higher in Kétou, Cotonou and Zagnanado (p value < 0.05). Surprisingly in Sô-Ava, a relatively high frequency of the L1014F allele despite the reported absence of pesticide use was observed. All mosquito populations were found to be deficient in heterozygosity across the study sites (FIS< 0). No genetic differentiation (FST< 0) was observed in the localities of Zagnanado and Kétou. Conclusion The survey on the use of insecticides showed that insecticide selection pressures differ across the investigated localities. It would be desirable to rotate or apply formulations of combined products with different modes of action. Doing so would enable a better management of resistant homozygous individuals, and mitigate the resistance effect of commonly used insecticides.

scholarly journals In Vitro Fumonisin Biosynthesis and Genetic Structure of Fusarium verticillioides Strains from Five Mediterranean Countries

2020 ◽  
Vol 8 (2) ◽  
pp. 241 ◽  
Author(s):  
Giovanni Beccari ◽  
Łukasz Stępień ◽  
Andrea Onofri ◽  
Veronica M. T. Lattanzio ◽  
Biancamaria Ciasca ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Geographical Origin ◽  
Fusarium Verticillioides ◽  
Fumonisin B1 ◽  
Genetic Profile ◽  
Mediterranean Countries ◽  
Intergenic Regions ◽  
Fumonisin B2 ◽  
High Level

Investigating the in vitro fumonisin biosynthesis and the genetic structure of Fusarium verticillioides populations can provide important insights into the relationships between strains originating from various world regions. In this study, 90 F. verticillioides strains isolated from maize in five Mediterranean countries (Italy, Spain, Tunisia, Egypt and Iran) were analyzed to investigate their ability to in vitro biosynthesize fumonisin B1, fumonisin B2 and fumonisin B3 and to characterize their genetic profile. In general, 80% of the analyzed strains were able to biosynthesize fumonisins (range 0.03–69.84 μg/g). Populations from Italy, Spain, Tunisia and Iran showed a similar percentage of fumonisin producing strains (>90%); conversely, the Egyptian population showed a lower level of producing strains (46%). Significant differences in fumonisin biosynthesis were detected among strains isolated in the same country and among strains isolated from different countries. A portion of the divergent FUM1 gene and of intergenic regions FUM6-FUM7 and FUM7-FUM8 were sequenced to evaluate strain diversity among populations. A high level of genetic uniformity inside the populations analyzed was detected. Apparently, neither geographical origin nor fumonisin production ability were correlated to the genetic diversity of the strain set. However, four strains from Egypt differed from the remaining strains.

The Social and Genetic Structure of a Natural Colony of House Mice, Mus musculus, at Healesville WildlifeSanctuary

1983 ◽  
Vol 31 (2) ◽  
pp. 155 ◽  
Author(s):  
GR Singleton
Keyword(s):  
Genetic Structure ◽  
Life Span ◽  
Social Organization ◽  
Turnover Rate ◽  
Spatial Organization ◽  
House Mice ◽  
Genetic Composition ◽  
Short Life ◽  
Short Life Span ◽  
The Social

A 2-year program monitored the spatial organization, genetic structure and turnover rate of an unconfined commensal colony of mice. Four demes (social breeding units) were identified; each usually consisted of one or two males and two or three females. Demes were detected simultaneously in adjoining cages of an aviary (one deme per cage). Movement between demes was rare and the life span of a deme ranged from 2 to 7 months. The adult members of each deme had genotypes compatible to the majority of the young captured in the respective cage of the aviary at the time of residence of the deme. Taken in isolation, these results suggest that social behaviour would have a major impact on the genetic structure of the aviary population. When viewed over the main breeding season, the short life span of a deme and the genetic differences between demes indicate that social organization probably had only a temporary effect on the genetic composition of the aviary population.

The differences of genetic structure of Trypanosoma cruzi isolates from central and South Americas(2)

1998 ◽  
Vol 47 ◽  
pp. 285
Author(s):  
H Higo ◽  
T Yanagi ◽  
V Matta ◽  
T Agatsuma ◽  
H Kanbara ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Trypanosoma Cruzi

Genetic structure of marginal populations of white spruce (Piceaglauca) at its northern limit of distribution in Nouveau-Québec

1989 ◽  
Vol 19 (11) ◽  
pp. 1371-1379 ◽  
Author(s):  
Monique Tremblay ◽  
Jean-Pierre Simon
Keyword(s):  
Genetic Structure ◽  
Genetic Differentiation ◽  
Geographic Distance ◽  
White Spruce ◽  
Gene Exchange ◽  
Northern Limit ◽  
Marginal Populations ◽  
Subarctic Region ◽  
Hardy Weinberg Equilibrium ◽  
Or Gene

The genetic structure of six marginal populations of white spruce (Piceaglauca (Moench) Voss) located at Richmond Gulf in the subarctic region of Nouveau-Québec, and one southern population located at Kuujjuaraapik (Poste-de-la-Baleine) were analyzed by acrylamide gel electrophoresis for seven enzyme systems. The analysis of 27 loci disclosed an average polymorphism of 76.2% and a level of heterozygosity of 0.319. Data based on Wright's; statistics: indicated a deficiency of heterozygotes for 60% of the loci, as calculated from the Hardy–Weinberg equilibrium. These results, coupled with the very low percentage of filled seeds in cones of all populations, suggest that a certain level of inbreeding or gene exchange among near-neighbour relatives influences the genetic structure of these populations. The genetic differentiation among populations is relatively high for a conifer [Formula: see text] and is not correlated with geographic distance. The age of trees, covering a period of 400 years affected by climatic changes, does not contribute to the genetic differentiation of the populations.

Enzyme polymorphism in Schistosoma mattheei from cattle in the Eastern Transvaal Lowveld

1989 ◽  
Vol 63 (3) ◽  
pp. 191-196 ◽  
Author(s):  
F. J. Kruger
Keyword(s):  
Adult Worm ◽  
Malate Dehydrogenase ◽  
Enzyme Polymorphism ◽  
The Other ◽  
Enzyme Electrophoresis ◽  
Weinberg Equilibrium ◽  
Hardy Weinberg Equilibrium ◽  
Glucose 6 Phosphate Dehydrogenase

ABSTRACTEnzyme electrophoresis was conducted on 10 Schistosoma mattheei adult worm samples, comprising 270 individuals, collected from cattle in the Eastern Transvaal Lowveld. Glucose-6-phosphate dehydrogenase (G6PDH) was studied in all the samples and phosphoglucomutase (PGM) and malate dehydrogenase (MDH) in five populations each. Only one population was polymorphic for G6PDH. In this population, in addition to the allele found in all the other samples, a second allele occurred with a similar Rf value to S. haematobium. The two alleles were in Hardy-Weinberg equilibrium. MDH-1 exhibited two alleles. However, these alleles were not in equilibrium. In certain populations, heterozygotes occurred together with homozygotes of one of the alleles only. PGM was monomorphic in all the populations studied.

Phenotypic and genotypic spacing within an aggregation of the anemone, Actinia equina

1983 ◽  
Vol 63 (3) ◽  
pp. 493-515 ◽  
Author(s):  
D. L. J. Quicke ◽  
R. C. Brace
Keyword(s):  
East Coast ◽  
Allelic Variation ◽  
Size Distributions ◽  
Nearest Neighbour ◽  
Founder Effects ◽  
Genetic Composition ◽  
Colonization History ◽  
Hardy Weinberg Equilibrium ◽  
High Level ◽  
Over Time

Enzyme and colour phenotypes were determined within a single mid-shore aggregation (n = 106) of the anemone, Actinia equina L. on the east coast of Britain. On the basis of allelic variation at four enzyme loci, a large number (n ≃ 30) of genotypes were distinguished of which only three consisted often or more anemones. Little evidence was found of obvious genotypic clustering, a result which was unexpected since this species broods young which are genetically identical with their parents, and which are potentially available for local (within site) colonization. We propose that the unexpectedly high level of genetic variability encountered at this site, can be explained by the following factors: (1) site and anemone longevities are probably measurable in tens of years, (2) distances travelled by anemones during their lifetime may be considerable, thus resulting in extensive inter-digitation of clones over time, and (3) the reproductive strategy of A. equina incorporates sexual reproduction with a planktonic dispersal phase.Nearest-neighbour analyses applied to the distribution of phenotypes within this aggregation revealed several examples of auto-phenotypic under-dispersion. These results, together with (1) departure from Hardy–Weinberg equilibrium at a hexokinase locus, (2) evidence of linkage disequilibrium between hexokinase and malate dehydrogenase alleles, and (3) linkage between alleles at both these loci with a colour phenotype (grey pedal disc), all indicate that the genetic composition of this group of anemones had been strongly influenced by founder effects followed by clonal reproduction.A comparative analysis of the size distributions of the various phenotypes and genotypes yielded few conclusions relating either to colonization history or to differential selection; reasons are given to account for this failure.

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