Deep learning and taphonomy: high accuracy in the classification of cut marks made on fleshed and defleshed bones using convolutional neural networks

AbstractAccurate identification of bone surface modifications (BSM) is crucial for the taphonomic understanding of archaeological and paleontological sites. Critical interpretations of when humans started eating meat and animal fat or when they started using stone tools, or when they occupied new continents or interacted with predatory guilds impinge on accurate identifications of BSM. Until now, interpretations of Plio-Pleistocene BSM have been contentious because of the high uncertainty in discriminating among taphonomic agents. Recently, the use of machine learning algorithms has yielded high accuracy in the identification of BSM. A branch of machine learning methods based on imaging, computer vision (CV), has opened the door to a more objective and accurate method of BSM identification. The present work has selected two extremely similar types of BSM (cut marks made on fleshed an defleshed bones) to test the immense potential of artificial intelligence methods. This CV approach not only produced the highest accuracy in the classification of these types of BSM until present (95% on complete images of BSM and 88.89% of images of only internal mark features), but it also has enabled a method for determining which inconspicuous microscopic features determine successful BSM discrimination. The potential of this method in other areas of taphonomy and paleobiology is enormous.

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Comparison between the different Artificial Neural Network (ANN) accuracy in diagnosis of asthma: مقارنة بين اختلاف دقة الشبكات العصبية الاصطناعية في تشخيص مرض الربو

Journal of engineering sciences and information technology - مجلة العلوم الهندسية و تكنولوجيا المعلومات ◽

10.26389/ajsrp.n260421 ◽

2021 ◽

Vol 5 (4) ◽

pp. 172-165

Author(s):

Hanein Omar Mohamed, Basma.F.Idris Hanein Omar Mohamed, Basma.F.Idris

Keyword(s):

Neural Network ◽

Machine Learning ◽

Artificial Neural Network ◽

Learning Algorithms ◽

High Accuracy ◽

Machine Learning Algorithms ◽

Support Vector ◽

Data Mining Algorithms ◽

Artificial Neural

Asthma is a chronic disease that is caused by inflammation of airways. Diagnosis, predication and classification of asthmatic are one of the major attractive areas of research for decades by using different and recent techniques, however the main problem of asthma is misdiagnosis. This paper simplifies and compare between different Artificial Neural Network techniques used to solve this problem by using different algorithms to getting a high level of accuracyin diagnosis, prediction, and classification of asthma like: (data mining algorithms, machine learning algorithms, deep machine learning algorithms), depending and passing through three stages: data acquisition, feature extracting, data classification. According to the comparison of different techniques the high accuracy achieved by ANN was (98.85%), and the low accuracy of it was (80%), despite of the accuracy achieved by Support Vector Machine (SVM) was (86%) when used Mel Frequency Cepstral Coefficient MFCC for feature extraction, while the accuracy was (99.34%) when used Relief for extracting feature. Based in our comparison we recommend that if the researchers used the same techniques they should to return to previous studies it to get high accuracy.

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Classification of Brainwaves for Sleep Stages by High-Dimensional FFT Features from EEG Signals

Applied Sciences ◽

10.3390/app10051797 ◽

2020 ◽

Vol 10 (5) ◽

pp. 1797 ◽

Cited By ~ 2

Author(s):

Mera Kartika Delimayanti ◽

Bedy Purnama ◽

Ngoc Giang Nguyen ◽

Mohammad Reza Faisal ◽

Kunti Robiatul Mahmudah ◽

...

Keyword(s):

Machine Learning ◽

Sleep Stage ◽

Machine Learning Algorithms ◽

High Dimensional ◽

Sleep Stages ◽

Eeg Signals ◽

Stage Classification ◽

Sleep Stage Classification ◽

Low Dimensional

Manual classification of sleep stage is a time-consuming but necessary step in the diagnosis and treatment of sleep disorders, and its automation has been an area of active study. The previous works have shown that low dimensional fast Fourier transform (FFT) features and many machine learning algorithms have been applied. In this paper, we demonstrate utilization of features extracted from EEG signals via FFT to improve the performance of automated sleep stage classification through machine learning methods. Unlike previous works using FFT, we incorporated thousands of FFT features in order to classify the sleep stages into 2–6 classes. Using the expanded version of Sleep-EDF dataset with 61 recordings, our method outperformed other state-of-the art methods. This result indicates that high dimensional FFT features in combination with a simple feature selection is effective for the improvement of automated sleep stage classification.

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A Machine Learning Approach to Study Glycosidase Activities from Bifidobacterium

Microorganisms ◽

10.3390/microorganisms9051034 ◽

2021 ◽

Vol 9 (5) ◽

pp. 1034

Author(s):

Carlos Sabater ◽

Lorena Ruiz ◽

Abelardo Margolles

Keyword(s):

Machine Learning ◽

Supervised Classification ◽

Machine Learning Algorithms ◽

Learning Approach ◽

Human Milk Oligosaccharides ◽

Future Studies ◽

High Fiber ◽

Machine Learning Approach ◽

Prebiotic Oligosaccharides

This study aimed to recover metagenome-assembled genomes (MAGs) from human fecal samples to characterize the glycosidase profiles of Bifidobacterium species exposed to different prebiotic oligosaccharides (galacto-oligosaccharides, fructo-oligosaccharides and human milk oligosaccharides, HMOs) as well as high-fiber diets. A total of 1806 MAGs were recovered from 487 infant and adult metagenomes. Unsupervised and supervised classification of glycosidases codified in MAGs using machine-learning algorithms allowed establishing characteristic hydrolytic profiles for B. adolescentis, B. bifidum, B. breve, B. longum and B. pseudocatenulatum, yielding classification rates above 90%. Glycosidase families GH5 44, GH32, and GH110 were characteristic of B. bifidum. The presence or absence of GH1, GH2, GH5 and GH20 was characteristic of B. adolescentis, B. breve and B. pseudocatenulatum, while families GH1 and GH30 were relevant in MAGs from B. longum. These characteristic profiles allowed discriminating bifidobacteria regardless of prebiotic exposure. Correlation analysis of glycosidase activities suggests strong associations between glycosidase families comprising HMOs-degrading enzymes, which are often found in MAGs from the same species. Mathematical models here proposed may contribute to a better understanding of the carbohydrate metabolism of some common bifidobacteria species and could be extrapolated to other microorganisms of interest in future studies.

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Delineating Smallholder Maize Farms from Sentinel-1 Coupled with Sentinel-2 Data Using Machine Learning

Sustainability ◽

10.3390/su13094728 ◽

2021 ◽

Vol 13 (9) ◽

pp. 4728

Author(s):

Zinhle Mashaba-Munghemezulu ◽

George Johannes Chirima ◽

Cilence Munghemezulu

Keyword(s):

Machine Learning ◽

Food Security ◽

Rural Communities ◽

Machine Learning Algorithms ◽

Support Vector ◽

Subsistence Agriculture ◽

Smallholder Farms ◽

Main Driver ◽

Sentinel 2

Rural communities rely on smallholder maize farms for subsistence agriculture, the main driver of local economic activity and food security. However, their planted area estimates are unknown in most developing countries. This study explores the use of Sentinel-1 and Sentinel-2 data to map smallholder maize farms. The random forest (RF), support vector (SVM) machine learning algorithms and model stacking (ST) were applied. Results show that the classification of combined Sentinel-1 and Sentinel-2 data improved the RF, SVM and ST algorithms by 24.2%, 8.7%, and 9.1%, respectively, compared to the classification of Sentinel-1 data individually. Similarities in the estimated areas (7001.35 ± 1.2 ha for RF, 7926.03 ± 0.7 ha for SVM and 7099.59 ± 0.8 ha for ST) show that machine learning can estimate smallholder maize areas with high accuracies. The study concludes that the single-date Sentinel-1 data were insufficient to map smallholder maize farms. However, single-date Sentinel-1 combined with Sentinel-2 data were sufficient in mapping smallholder farms. These results can be used to support the generation and validation of national crop statistics, thus contributing to food security.

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174 A comparison of machine learning algorithms in the classification of beef steers finished in feedlot

Journal of Animal Science ◽

10.1093/jas/skaa278.231 ◽

2020 ◽

Vol 98 (Supplement_4) ◽

pp. 126-127

Author(s):

Lucas S Lopes ◽

Christine F Baes ◽

Dan Tulpan ◽

Luis Artur Loyola Chardulo ◽

Otavio Machado Neto ◽

...

Keyword(s):

Machine Learning ◽

Decision Tree ◽

Learning Algorithms ◽

Machine Learning Algorithms ◽

Final Decision ◽

Relevant Parameter ◽

Good Prediction ◽

Quality Traits ◽

C4.5 Decision Tree

Abstract The aim of this project is to compare some of the state-of-the-art machine learning algorithms on the classification of steers finished in feedlots based on performance, carcass and meat quality traits. The precise classification of animals allows for fast, real-time decision making in animal food industry, such as culling or retention of herd animals. Beef production presents high variability in its numerous carcass and beef quality traits. Machine learning algorithms and software provide an opportunity to evaluate the interactions between traits to better classify animals. Four different treatment levels of wet distiller’s grain were applied to 97 Angus-Nellore animals and used as features for the classification problem. The C4.5 decision tree, Naïve Bayes (NB), Random Forest (RF) and Multilayer Perceptron (MLP) Artificial Neural Network algorithms were used to predict and classify the animals based on recorded traits measurements, which include initial and final weights, sheer force and meat color. The top performing classifier was the C4.5 decision tree algorithm with a classification accuracy of 96.90%, while the RF, the MLP and NB classifiers had accuracies of 55.67%, 39.17% and 29.89% respectively. We observed that the final decision tree model constructed with C4.5 selected only the dry matter intake (DMI) feature as a differentiator. When DMI was removed, no other feature or combination of features was sufficiently strong to provide good prediction accuracies for any of the classifiers. We plan to investigate in a follow-up study on a significantly larger sample size, the reasons behind DMI being a more relevant parameter than the other measurements.

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Multivariate Analysis for the Classification of Chocolate According to its Percentage of Cocoa by Using Terahertz Time-Domain Spectroscopy (THz-TDS)

Proceedings ◽

10.3390/foods_2020-08029 ◽

2020 ◽

Vol 70 (1) ◽

pp. 109

Author(s):

Jimy Oblitas ◽

Jorge Ruiz

Keyword(s):

Machine Learning ◽

Time Domain ◽

Electromagnetic Pulse ◽

Machine Learning Algorithms ◽

Classification Models ◽

Terahertz Time Domain Spectroscopy ◽

Time Domain Spectroscopy ◽

Svm Algorithm ◽

Classification Of Images

Terahertz time-domain spectroscopy is a useful technique for determining some physical characteristics of materials, and is based on selective frequency absorption of a broad-spectrum electromagnetic pulse. In order to investigate the potential of this technology to classify cocoa percentages in chocolates, the terahertz spectra (0.5–10 THz) of five chocolate samples (50%, 60%, 70%, 80% and 90% of cocoa) were examined. The acquired data matrices were analyzed with the MATLAB 2019b application, from which the dielectric function was obtained along with the absorbance curves, and were classified by using 24 mathematical classification models, achieving differentiations of around 93% obtained by the Gaussian SVM algorithm model with a kernel scale of 0.35 and a one-against-one multiclass method. It was concluded that the combined processing and classification of images obtained from the terahertz time-domain spectroscopy and the use of machine learning algorithms can be used to successfully classify chocolates with different percentages of cocoa.

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A Machine Vision Approach for Bioreactor Foam Sensing

SLAS TECHNOLOGY Translating Life Sciences Innovation ◽

10.1177/24726303211008861 ◽

2021 ◽

pp. 247263032110088

Author(s):

Jonas Austerjost ◽

Robert Söldner ◽

Christoffer Edlund ◽

Johan Trygg ◽

David Pollard ◽

...

Keyword(s):

Machine Learning ◽

Machine Vision ◽

State Of The Art ◽

Low Cost ◽

High Accuracy ◽

Consumer Electronics ◽

Learning System ◽

Automotive Applications ◽

Fine Grained

Machine vision is a powerful technology that has become increasingly popular and accurate during the last decade due to rapid advances in the field of machine learning. The majority of machine vision applications are currently found in consumer electronics, automotive applications, and quality control, yet the potential for bioprocessing applications is tremendous. For instance, detecting and controlling foam emergence is important for all upstream bioprocesses, but the lack of robust foam sensing often leads to batch failures from foam-outs or overaddition of antifoam agents. Here, we report a new low-cost, flexible, and reliable foam sensor concept for bioreactor applications. The concept applies convolutional neural networks (CNNs), a state-of-the-art machine learning system for image processing. The implemented method shows high accuracy for both binary foam detection (foam/no foam) and fine-grained classification of foam levels.

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Classification of Daily Irradiance Profiles and the Behaviour of Photovoltaic Plant Elements: The Effects of Cloud Enhancement

Applied Sciences ◽

10.3390/app11115230 ◽

2021 ◽

Vol 11 (11) ◽

pp. 5230

Author(s):

Isabel Santiago ◽

Jorge Luis Esquivel-Martin ◽

David Trillo-Montero ◽

Rafael Jesús Real-Calvo ◽

Víctor Pallarés-López

Keyword(s):

Machine Learning ◽

Learning Algorithms ◽

Automatic Classification ◽

Sampling Frequency ◽

Machine Learning Algorithms ◽

Unsupervised Machine Learning ◽

Average Efficiency ◽

Clear Sky ◽

Photovoltaic Plant

In this work, the automatic classification of daily irradiance profiles registered in a photovoltaic installation located in the south of Spain was carried out for a period of nine years, with a sampling frequency of 5 min, and the subsequent analysis of the operation of the elements of the installation on each type of day was also performed. The classification was based on the total daily irradiance values and the fluctuations of this parameter throughout the day. The irradiance profiles were grouped into nine different categories using unsupervised machine learning algorithms for clustering, implemented in Python. It was found that the behaviour of the modules and the inverter of the installation was influenced by the type of day obtained, such that the latter worked with a better average efficiency on days with higher irradiance and lower fluctuations. However, the modules worked with better average efficiency on days with irradiance fluctuations than on clear sky days. This behaviour of the modules may be due to the presence, on days with passing clouds, of the phenomenon known as cloud enhancement, in which, due to reflections of radiation on the edges of the clouds, irradiance values can be higher at certain moments than those that occur on clear sky days, without passing clouds. This is due to the higher energy generated during these irradiance peaks and to the lower temperatures that the module reaches due to the shaded areas created by the clouds, resulting in a reduction in its temperature losses.

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Mapping Allochemical Limestone Formations in Hazara, Pakistan Using Google Cloud Architecture: Application of Machine-Learning Algorithms on Multispectral Data

ISPRS International Journal of Geo-Information ◽

10.3390/ijgi10020058 ◽

2021 ◽

Vol 10 (2) ◽

pp. 58

Author(s):

Muhammad Fawad Akbar Khan ◽

Khan Muhammad ◽

Shahid Bashir ◽

Shahab Ud Din ◽

Muhammad Hanif

Keyword(s):

Machine Learning ◽

Remote Sensing ◽

Learning Algorithms ◽

Remote Sensing Data ◽

Kappa Coefficient ◽

Machine Learning Algorithms ◽

Landsat 8 ◽

Sensing Data ◽

Fossiliferous Limestone

Low-resolution Geological Survey of Pakistan (GSP) maps surrounding the region of interest show oolitic and fossiliferous limestone occurrences correspondingly in Samanasuk, Lockhart, and Margalla hill formations in the Hazara division, Pakistan. Machine-learning algorithms (MLAs) have been rarely applied to multispectral remote sensing data for differentiating between limestone formations formed due to different depositional environments, such as oolitic or fossiliferous. Unlike the previous studies that mostly report lithological classification of rock types having different chemical compositions by the MLAs, this paper aimed to investigate MLAs’ potential for mapping subclasses within the same lithology, i.e., limestone. Additionally, selecting appropriate data labels, training algorithms, hyperparameters, and remote sensing data sources were also investigated while applying these MLAs. In this paper, first, oolitic (Samanasuk), fossiliferous (Lockhart and Margalla) limestone-bearing formations along with the adjoining Hazara formation were mapped using random forest (RF), support vector machine (SVM), classification and regression tree (CART), and naïve Bayes (NB) MLAs. The RF algorithm reported the best accuracy of 83.28% and a Kappa coefficient of 0.78. To further improve the targeted allochemical limestone formation map, annotation labels were generated by the fusion of maps obtained from principal component analysis (PCA), decorrelation stretching (DS), X-means clustering applied to ASTER-L1T, Landsat-8, and Sentinel-2 datasets. These labels were used to train and validate SVM, CART, NB, and RF MLAs to obtain a binary classification map of limestone occurrences in the Hazara division, Pakistan using the Google Earth Engine (GEE) platform. The classification of Landsat-8 data by CART reported 99.63% accuracy, with a Kappa coefficient of 0.99, and was in good agreement with the field validation. This binary limestone map was further classified into oolitic (Samanasuk) and fossiliferous (Lockhart and Margalla) formations by all the four MLAs; in this case, RF surpassed all the other algorithms with an improved accuracy of 96.36%. This improvement can be attributed to better annotation, resulting in a binary limestone classification map, which formed a mask for improved classification of oolitic and fossiliferous limestone in the area.

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