scholarly journals Splicing- and demethylase-independent functions of LSD1 in zebrafish primitive hematopoiesis

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Junya Tamaoki ◽  
Miki Takeuchi ◽  
Ryo Abe ◽  
Hiroshi Kaneko ◽  
Taeko Wada ◽  
...  
2019 ◽  
Vol 14 (2) ◽  
pp. 138-141
Author(s):  
I.M. Utyashev

Variable cross-section rods are used in many parts and mechanisms. For example, conical rods are widely used in percussion mechanisms. The strength of such parts directly depends on the natural frequencies of longitudinal vibrations. The paper presents a method that allows numerically finding the natural frequencies of longitudinal vibrations of an elastic rod with a variable cross section. This method is based on representing the cross-sectional area as an exponential function of a polynomial of degree n. Based on this idea, it was possible to formulate the Sturm-Liouville problem with boundary conditions of the third kind. The linearly independent functions of the general solution have the form of a power series in the variables x and λ, as a result of which the order of the characteristic equation depends on the choice of the number of terms in the series. The presented approach differs from the works of other authors both in the formulation and in the solution method. In the work, a rod with a rigidly fixed left end is considered, fixing on the right end can be either free, or elastic or rigid. The first three natural frequencies for various cross-sectional profiles are given. From the analysis of the numerical results it follows that in a rigidly fixed rod with thinning in the middle part, the first natural frequency is noticeably higher than that of a conical rod. It is shown that with an increase in the rigidity of fixation at the right end, the natural frequencies increase for all cross section profiles. The results of the study can be used to solve inverse problems of restoring the cross-sectional profile from a finite set of natural frequencies.


2020 ◽  
pp. jbc.RA120.016511
Author(s):  
Seung J Kim ◽  
James I MacDonald ◽  
Frederick A. Dick

The retinoblastoma tumour suppressor protein (RB) plays an important role in biological processes such as cell cycle control, DNA damage repair, epigenetic regulation, and genome stability. The canonical model of RB regulation is that cyclin-CDKs phosphorylate, and render RB inactive in late G1/S, promoting entry into S phase. Recently, mono-phosphorylated RB species were described to have distinct cell-cycle independent functions, suggesting that a phosphorylation code dictates diversity of RB function. However, a biologically relevant, functional role of RB phosphorylation at non-CDK sites has remained elusive. Here, we investigated S838/T841 dual phosphorylation, its upstream stimulus, and downstream functional output.  We found that mimicking T-cell receptor activation in Jurkat leukemia cells induced sequential activation of downstream kinases including p38 MAPK, and RB S838/T841 phosphorylation.  This signaling pathway disrupts RB and condensin II interaction with chromatin.  Using cells expressing a WT or S838A/T841A mutant RB fragment, we present evidence that deficiency for this phosphorylation event prevents condensin II release from chromatin.


2021 ◽  
Vol 22 (5) ◽  
pp. 2689
Author(s):  
Jianmin Si ◽  
Chris Van den Haute ◽  
Evy Lobbestael ◽  
Shaun Martin ◽  
Sarah van Veen ◽  
...  

ATP13A2, a late endo-/lysosomal polyamine transporter, is implicated in a variety of neurodegenerative diseases, including Parkinson’s disease and Kufor–Rakeb syndrome, an early-onset atypical form of parkinsonism. Loss-of-function mutations in ATP13A2 result in lysosomal deficiency as a consequence of impaired lysosomal export of the polyamines spermine/spermidine. Furthermore, accumulating evidence suggests the involvement of ATP13A2 in regulating the fate of α-synuclein, such as cytoplasmic accumulation and external release. However, no consensus has yet been reached on the mechanisms underlying these effects. Here, we aimed to gain more insight into how ATP13A2 is linked to α-synuclein biology in cell models with modified ATP13A2 activity. We found that loss of ATP13A2 impairs lysosomal membrane integrity and induces α-synuclein multimerization at the membrane, which is enhanced in conditions of oxidative stress or exposure to spermine. In contrast, overexpression of ATP13A2 wildtype (WT) had a protective effect on α-synuclein multimerization, which corresponded with reduced αsyn membrane association and stimulation of the ubiquitin-proteasome system. We also found that ATP13A2 promoted the secretion of α-synuclein through nanovesicles. Interestingly, the catalytically inactive ATP13A2 D508N mutant also affected polyubiquitination and externalization of α-synuclein multimers, suggesting a regulatory function independent of the ATPase and transport activity. In conclusion, our study demonstrates the impact of ATP13A2 on α-synuclein multimerization via polyamine transport dependent and independent functions.


Genetics ◽  
2004 ◽  
Vol 168 (2) ◽  
pp. 867-875 ◽  
Author(s):  
Jan Emmerich ◽  
Claas A. Meyer ◽  
Aida Flor A. de la Cruz ◽  
Bruce A. Edgar ◽  
Christian F. Lehner

Cells ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 550
Author(s):  
Indra A. Shaltiel ◽  
Alba Llopis ◽  
Melinda Aprelia ◽  
Rob Klompmaker ◽  
Apostolos Menegakis ◽  
...  

Most Cyclin-dependent kinases (Cdks) are redundant for normal cell division. Here we tested whether these redundancies are maintained during cell cycle recovery after a DNA damage-induced arrest in G1. Using non-transformed RPE-1 cells, we find that while Cdk4 and Cdk6 act redundantly during normal S-phase entry, they both become essential for S-phase entry after DNA damage in G1. We show that this is due to a greater overall dependency for Cdk4/6 activity, rather than to independent functions of either kinase. In addition, we show that inactivation of pocket proteins is sufficient to overcome the inhibitory effects of complete Cdk4/6 inhibition in otherwise unperturbed cells, but that this cannot revert the effects of Cdk4/6 inhibition in DNA damaged cultures. Indeed, we could confirm that, in addition to inactivation of pocket proteins, Cdh1-dependent anaphase-promoting complex/cyclosome (APC/CCdh1) activity needs to be inhibited to promote S-phase entry in damaged cultures. Collectively, our data indicate that DNA damage in G1 creates a unique situation where high levels of Cdk4/6 activity are required to inactivate pocket proteins and APC/CCdh1 to promote the transition from G1 to S phase.


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