scholarly journals Application of feed forward and recurrent neural networks in simulation of left ventricular mechanics

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Yaghoub Dabiri ◽  
Alex Van der Velden ◽  
Kevin L. Sack ◽  
Jenny S. Choy ◽  
Julius M. Guccione ◽  
...  

AbstractAn understanding of left ventricle (LV) mechanics is fundamental for designing better preventive, diagnostic, and treatment strategies for improved heart function. Because of the costs of clinical and experimental studies to treat and understand heart function, respectively, in-silico models play an important role. Finite element (FE) models, which have been used to create in-silico LV models for different cardiac health and disease conditions, as well as cardiac device design, are time-consuming and require powerful computational resources, which limits their use when real-time results are needed. As an alternative, we sought to use deep learning (DL) for LV in-silico modeling. We used 80 four-chamber heart FE models for feed forward, as well as recurrent neural network (RNN) with long short-term memory (LSTM) models for LV pressure and volume. We used 120 LV-only FE models for training LV stress predictions. The active material properties of the myocardium and time were features for the LV pressure and volume training, and passive material properties and element centroid coordinates were features of the LV stress prediction models. For six test FE models, the DL error for LV volume was 1.599 ± 1.227 ml, and the error for pressure was 1.257 ± 0.488 mmHg; for 20 LV FE test examples, the mean absolute errors were, respectively, 0.179 ± 0.050 for myofiber, 0.049 ± 0.017 for cross-fiber, and 0.039 ± 0.011 kPa for shear stress. After training, the DL runtime was in the order of seconds whereas equivalent FE runtime was in the order of several hours (pressure and volume) or 20 min (stress). We conclude that using DL, LV in-silico simulations can be provided for applications requiring real-time results.

2000 ◽  
Vol 122 (5) ◽  
pp. 479-487 ◽  
Author(s):  
R. J. Okamoto ◽  
M. J. Moulton ◽  
S. J. Peterson ◽  
D. Li ◽  
M. K. Pasque ◽  
...  

The lack of an appropriate three-dimensional constitutive relation for stress in passive ventricular myocardium currently limits the utility of existing mathematical models for experimental and clinical applications. Previous experiments used to estimate parameters in three-dimensional constitutive relations, such as biaxial testing of excised myocardial sheets or passive inflation of the isolated arrested heart, have not included significant transverse shear deformation or in-plane compression. Therefore, a new approach has been developed in which suction is applied locally to the ventricular epicardium to introduce a complex deformation in the region of interest, with transmural variations in the magnitude and sign of nearly all six strain components. The resulting deformation is measured throughout the region of interest using magnetic resonance tagging. A nonlinear, three-dimensional, finite element model is used to predict these measurements at several suction pressures. Parameters defining the material properties of this model are optimized by comparing the measured and predicted myocardial deformations. We used this technique to estimate material parameters of the intact passive canine left ventricular free wall using an exponential, transversely isotropic constitutive relation. We tested two possible models of the heart wall: first, that it was homogeneous myocardium, and second, that the myocardium was covered with a thin epicardium with different material properties. For both models, in agreement with previous studies, we found that myocardium was nonlinear and anisotropic with greater stiffness in the fiber direction. We obtained closer agreement to previously published strain data from passive filling when the ventricular wall was modeled as having a separate, isotropic epicardium. These results suggest that epicardium may play a significant role in passive ventricular mechanics. [S0148-0731(00)00305-8]


2019 ◽  
Vol 87 (1) ◽  
Author(s):  
Yangyang Zhang ◽  
Chaofeng Lü ◽  
Bingwei Lu ◽  
Xue Feng ◽  
Ji Wang

Abstract Left ventricular (LV) volume is a crucial indicator for the assessment of the heart function. However, the current clinical practice cannot be used to monitor the LV volume continuously or warn patients with high risk in time before heart attack occurs in everyday life, resulting in high mortality and morbidity. Here, we theoretically validate the potentiality of a conformal real-time LV deformation-monitoring sensor using piezoelectric materials. The electromechanical relationship between the deformation of the hearts and output voltage signals of the sensors is demonstrated first. End-to-end displacements and deformations of piezoelectric films under cyclic load are derived from the output voltage signals and then compared with experimental values. Then, the real-time LV volumes of a pig and a cow are derived and compared by employing the experimental output voltage signals of the flexible sensor mounted on the LV surface. Finally, by employing the LV volume data of healthy people and patients with various heart diseases in the literature, the theoretical output voltage signals of flexile sensors when mounted on LV surface are calculated and compared. These predicted output voltage signals show significant differences for people with different kinds of cardiac diseases. The results in this study demonstrate that the conformal piezoelectric sensor is fully potential to continuously monitor the cardiac deformation and correspondingly provide timely warning for cardiologists and patients with heart diseases.


Circulation ◽  
1996 ◽  
Vol 93 (2) ◽  
pp. 259-265 ◽  
Author(s):  
Giovanni de Simone ◽  
Richard B. Devereux ◽  
Michael J. Koren ◽  
George A. Mensah ◽  
Paul N. Casale ◽  
...  

2021 ◽  
Vol 13 (11) ◽  
pp. 2179
Author(s):  
Pedro Mateus ◽  
Virgílio B. Mendes ◽  
Sandra M. Plecha

The neutral atmospheric delay is one of the major error sources in Space Geodesy techniques such as Global Navigation Satellite Systems (GNSS), and its modeling for high accuracy applications can be challenging. Improving the modeling of the atmospheric delays (hydrostatic and non-hydrostatic) also leads to a more accurate and precise precipitable water vapor estimation (PWV), mostly in real-time applications, where models play an important role, since numerical weather prediction models cannot be used for real-time processing or forecasting. This study developed an improved version of the Hourly Global Pressure and Temperature (HGPT) model, the HGPT2. It is based on 20 years of ERA5 reanalysis data at full spatial (0.25° × 0.25°) and temporal resolution (1-h). Apart from surface air temperature, surface pressure, zenith hydrostatic delay, and weighted mean temperature, the updated model also provides information regarding the relative humidity, zenith non-hydrostatic delay, and precipitable water vapor. The HGPT2 is based on the time-segmentation concept and uses the annual, semi-annual, and quarterly periodicities to calculate the relative humidity anywhere on the Earth’s surface. Data from 282 moisture sensors located close to GNSS stations during 1 year (2020) were used to assess the model coefficients. The HGPT2 meteorological parameters were used to process 35 GNSS sites belonging to the International GNSS Service (IGS) using the GAMIT/GLOBK software package. Results show a decreased root-mean-square error (RMSE) and bias values relative to the most used zenith delay models, with a significant impact on the height component. The HGPT2 was developed to be applied in the most diverse areas that can significantly benefit from an ERA5 full-resolution model.


2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Yankun Lyu ◽  
Vipin K. Verma ◽  
Younjee Lee ◽  
Iosif Taleb ◽  
Rachit Badolia ◽  
...  

AbstractIt is well established that the aging heart progressively remodels towards a senescent phenotype, but alterations of cellular microstructure and their differences to chronic heart failure (HF) associated remodeling remain ill-defined. Here, we show that the transverse tubular system (t-system) and proteins underlying excitation-contraction coupling in cardiomyocytes are characteristically remodeled with age. We shed light on mechanisms of this remodeling and identified similarities and differences to chronic HF. Using left ventricular myocardium from donors and HF patients with ages between 19 and 75 years, we established a library of 3D reconstructions of the t-system as well as ryanodine receptor (RyR) and junctophilin 2 (JPH2) clusters. Aging was characterized by t-system alterations and sarcolemmal dissociation of RyR clusters. This remodeling was less pronounced than in HF and accompanied by major alterations of JPH2 arrangement. Our study indicates that targeting sarcolemmal association of JPH2 might ameliorate age-associated deficiencies of heart function.


2020 ◽  
Vol 79 (Suppl 1) ◽  
pp. 1452.3-1453
Author(s):  
A. Martynova ◽  
T. Popkova ◽  
H. Gerasimova

Background:N-terminal pro-brain natriuretic peptide (NT-proBNP) is a known marker of heart dysfunction, mainly described in patients with high activity of rheumatoid arthritis (RA). Further knowledge of the influence of the IL-6 receptor antagonist, tocilizumab (TCZ), on NT-proBNP levels and systolic heart function is yet to be obtained.Objectives:Access the effect of 12 months TCZ therapy on NT-proBNP levels, transthoracal ehocardiography results and analyze the association between congestive heart disease progression and RA activity.Methods:37 RA patients (pts) (31F/6M); median age 56,5 [48; 63,5] years; disease duration 48 [6; 348] months; DAS28 score 6,15 [5,44; 6,45]; rheumatoid factor (RF)+100%; anti–citrullinated protein antibody (ACPA) + 79,6% were treated in an open-label study with TCZ (8 mg/kg every 4 weeks). Identification of NT-pro-BNT in blood serum, transthoracal ultrasound evaluation of left ventriculum ejection fraction (LVEF), E/A ratio performed at baseline and 12 months.Results:11 (29,7%) pts had congestive heart disease (CHD) (II functional class of NYHA), 7 (18,9%) pts having signs of mild left ventricular dysfunction (LVD) as dyspnea, shortness of breath, cardiotropic treatment remained the same in the course of the study. After 12 month TCZ treatment as RA activity lowered (DAS28 2.32 [1,75; 3,15], р<0,05), NT-proBNP levels decreased (100,95 [57.9; 117.6] pg/ml to 90,46 [33.62; 106.6] pg/ml), along with elevation of LVEF (60,75 [60; 70]% to 67,68 [62.5; 73.5], p = 0,001). Increase of E/A (0,97 [0.8; 1.17] to 1,04 [0.7; 1.42] correlated with decrease of NT-proBNP level (r = -0,63, p=0,036). Raise of LVEF over 12 months correlated with decrease of RA activity according to SDAI scale (r= -0,670, p<0,05). No significant relationship between NT-proBNP levels, LVEF, E/A and other scales measuring RA activity was found. Clinically all patients had improvement in evaluation of their health and no signs of CHD or RVD progression were found.Conclusion:Use of TCZ in patients with active RA showed none to positive influence on heart condition, specifically, lowering NT-proBNP levels, improving LVEF and reducing clinical signs of LVD.References:[1]Pan Y, Li D, Ma J, Shan L, Wei M. NT-proBNP test with improved accuracy for the diagnosis of chronic heart failure. Medicine (Baltimore). 2017 Dec;96(51):e9181.[2]D Novikova, I Kirillova, E Markelova et al. The first report of significantly improvement of NT-proBNP level in rheumatoid arthritis patients treated with tofacitinib during 12-month follow-up, European Heart Journal, Volume 40, Issue Supplement_1, October 2019, ehz745.0836.[3]Pappas DA, Nyberg F, Kremer JM et al. Clin Rheumatol. 2018 Sep;37(9):2331-2340.Disclosure of Interests:None declared


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