scholarly journals Unraveling genetics of semi-determinacy and identification of markers for indeterminate stem growth habit in chickpea (Cicer arietinum L.)

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ambika ◽  
Venkatraman Hegde ◽  
M. S. Nimmy ◽  
C. Bharadwaj ◽  
Shailesh Tripathi ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Cicer Arietinum ◽  
Ssr Markers ◽  
Growth Habit ◽  
Bulked Segregant Analysis ◽  
Single Gene ◽  
Stem Growth ◽  
Segregation Pattern ◽  
Yield Potential ◽  
The Cross

AbstractChickpea (Cicer arietinum L.) is predominantly an indeterminate plant and tends to generate vegetative growth when the ambient is conducive for soil moisture, temperature and certain other environmental conditions. The semi-determinate (SDT) types are comparatively early, resistant to lodging and found to be similar in their yield potential to indeterminate (IDT) lines. Indeterminate and semi-determinate genotypes are found to be similar during early stage, which makes it difficult to distinguish between them. Thus, there is a need to identify molecular markers linked either to indeterminate or semi-determinate plant types. The present study was carried out to study the genetics of semi-determinacy and identify molecular markers linked to stem growth habit. The study was undertaken in the cross involving BG 362(IDT) × BG 3078-1(SDT). All F1 plants were indeterminate, which indicates that indeterminate stem type is dominant over semi-determinate. In further advancement to F2 generation, F2 plants are segregated in the ratio of 3(Indeterminate): 1(Semi-determinate) that indicates that the IDT and SDT parents which are involved in the cross differed for a single gene. The segregation pattern observed in F2 is confirmed in F3 generation. The parental polymorphic survey was undertaken for molecular analysis using total of 245 SSR markers, out of which 41 polymorphic markers were found to distinguish the parents and were utilized for bulked segregant analysis (BSA). The segregation pattern in F2 indicates that the IDT (Indeterminate) and SDT (Semi-determinate) parents which are involved in the cross differed for single gene. The segregation pattern of F2 and F3 derived from the cross BG 362 (IDT) × BG 3078-1 (SDT) confirmed the genotypic structure of the newly found SDT genotype BG 3078-1 as dt1dt1Dt2Dt2. Three SSR markers TA42, Ca_GPSSR00560 and H3DO5 were found to be putatively linked to Dt1 locus regulating IDT stem growth habit. Our results indicate that the SSR markers identified for Dt1 locus helps to differentiate stem growth habit of chickpea in its early growth stage itself and can be efficiently utilized in Marker Assisted Selection (MAS) for changed plant type in chickpea.

Unraveling Genetics of Semi-Determinancy and Identification of Markers for Indeterminate Stem Growth Habit in Chickpea (Cicer Arietinum L.)

2021 ◽  
Author(s):  
Ambika Nagraj ◽  
Venkatraman Hegde ◽  
M S Nimmy ◽  
C Bharadwaj ◽  
Shailesh Tripathi ◽  
...  
Keyword(s):  
Cicer Arietinum ◽  
Ssr Markers ◽  
Growth Habit ◽  
Bulked Segregant Analysis ◽  
Single Gene ◽  
Stem Growth ◽  
Segregation Pattern ◽  
Yield Potential ◽  
Plant Type ◽  
The Cross

Abstract BackgroundChickpea (Cicer arietinum L.) is predominantly an indeterminate plant and tends to generate vegetative growth when the ambient is conducive for soil moisture, temperature and certain other environmental conditions. The semi-determinate (SDT) types are comparatively early, resistant to lodging and found to be similar in their yield potential to indeterminate (IDT) lines. Indeterminate types and semi-determinate genotypes are found to be similar during early stage, which makes it difficult to distinguish between them. Thus, there is a need to identify molecular marker linked either to indeterminate or semi-determinate plant type. The present study was carried out to study the genetics of semi-determinacy and identify molecular markers linked to stem growth habit. MethodsThe study was undertaken in the cross involving BG 362(IDT) X BG 3078-1(SDT). All F1 plants were indeterminate, which indicates that indeterminate stem type is dominant over semi-determinate. In further advancement to F2 generation, F2 plants are segregated in the ratio of 3(Indeterminate): 1(Semi-determinate) that indicates that the IDT and SDT parents which are involved in the cross differed for a single gene. The segregation pattern observed in F2 is confirmed in F3 generation. The parental polymorphic survey was undertaken for molecular analysis using total of 246 SSR markers, out of which 41 polymorphic markers were found to distinguish the parents and were utilized for bulked segregant analysis (BSA). ResultsThe segregation pattern in F2 indicates that the IDT(Indeterminate) and SDT(Semi-determinate) parents which are involved in the cross differed for single gene. The segregation pattern of F2 and F3 derived from the cross BG 362 (IDT) x BG 3078-1 (SDT) confirmed the genotypic structure of the newly found SDT genotype BG 3078-1 as dt1dt1Dt2Dt2. Three SSR markers TA42, Ca_GPSSR00560 and H3DO5 were found to be putatively linked to Dt1 locus regulating IDT stem growth habit.ConclusionOur results indicate that the SSR markers identified for Dt1 locus helps to differentiate stem growth habit of chickpea in its early growth stage itself and can be efficiently utilized in Marker Assisted Selection (MAS) for changed plant type in chickpea.

scholarly journals Genetics of semi-determinacy and identification of molecular marker linked to Dt1 locus in chickpea (Cicer arietinum L.)

2019 ◽  
Vol 79 (01S) ◽  
Author(s):  
Y. S. Harshavardhana ◽  
Venkatraman Hegde ◽  
Shailesh Tripathi ◽  
R. S. Raje ◽  
P. K. Jain ◽  
...  
Keyword(s):  
Molecular Marker ◽  
Growth Habit ◽  
Bulked Segregant Analysis ◽  
Dominant Gene ◽  
Stem Growth ◽  
Yield Potential ◽  
Genetic Constitution ◽  
High Fertility ◽  
Cicer Arietinum L ◽  
Stem Type

Chickpea is predominantly an indeterminate (IDT) plant due to which high fertility and irrigation have adverse effect on seed yield. The semi-determinate (SDT) types are relatively early, lodging resistant and found to be similar in their yield potential to that of IDT genotypes. However, the inheritance of SDT stem type is not well understood in chickpea. The present investigation was aimed at studying the genetics of SDT stem type and identifying molecular marker linked to Dt1 locus through Bulked Segregant Analysis (BSA). The genetics of semi-determinacy was studied in BGD 72 (IDT) x BG 3078-1(SDT) cross in which the genetic constitution of BGD 72 was already known as Dt1Dt1Dt2Dt2 based on the previous study. The F1 was IDT indicating the dominance of indeterminacy over semideterminacy. The segregation in F2 and F3 revealed that SDT stem growth in the new-found genotype BG3078-1 was governed by a single dominant gene Dt2 and its genotype designated as dt1dt1Dt2Dt2. The study of polymorphic survey between BGD-72(IDT) and BG 3078- 1(SDT) using 581 SSR markers found 50 markers polymorphic. The BSA using 50 polymorphic markers has identified TA42 and TR29 as polymorphic between IDT and SDT parents as well as IDT and SDT bulks and hence considered putatively linked to Dt1 locus governing IDT stem growth in chickpea. The two linked markers were validated in 15 IDT and 15 SDT F2 plants individually. These two markers were also validated in 3 IDT, 8SDT and 3 DT genotypes. This is the first report on the identification of a molecular marker associated with stem growth habit in chickpea.

Identification of SSR marker associated with rust resistance in cowpea (Vigna unguiculata L.) using bulk segregant analysis

2016 ◽  
Vol 39 (1) ◽  
Author(s):  
M. S. Uma ◽  
Niranjan Hegde ◽  
Shailaja Hittalmani
Keyword(s):  
Molecular Markers ◽  
Ssr Markers ◽  
Rust Resistance ◽  
Bulked Segregant Analysis ◽  
Rust Disease ◽  
Ssr Primers ◽  
Single Marker ◽  
Significant Regression ◽  
Resistant Genotypes ◽  
Selection Of

Bulked segregant analysis was undertaken to tag gene(s) controlling rust resistance using molecular markers in cowpea, to permit rapid selection of superior desirable rust resistant genotypes in the breeding program. For this purpose, the C-152, cultivated variety with high yielding, semi determinate plant type, good protein content and highly rust susceptible was crossed with genotype IC202778, the landrace from Himachal Pradesh, India having determinate, semi spreading and rust resistant characters. The parental genotypes were analyzed with 92 SSR markers for detection of polymorphism and only 13 markers showed polymorphism between the parents. Using each of these 13 SSR primers, we carried out bulked segregate analysis on F<sub>2</sub> plants representing two extremes of rust disease resistance and susceptible trait. Three SSR markers VuUGM02, VuUGM08 and VuUGM19 were found to be associated with rust resistance. This was further confirmed through selective genotyping. The co-segregation data on these molecular markers and rust resistance on F<sub>2</sub> plants were analysed by means of single-marker linear regression approach. Significant regression suggested linkage between VuUGM02 and rust resistance gene.

FloRunTM ‘331’ Peanut Variety

EDIS ◽  
2019 ◽  
Vol 2019 (1) ◽  
Author(s):  
Barry L. Tillman
Keyword(s):  
Seed Size ◽  
Growth Habit ◽  
Yield Potential ◽  
High Yield ◽  
University Of Florida ◽  
High Oleic ◽  
Central Stem ◽  
Research And Education ◽  
The University ◽  
High Yield Potential

FloRunTM ‘331’ peanut variety was developed by the University of Florida, Institute of Food and Agricultural Sciences, North Florida Research and Education Center near Marianna, Florida.  It was released in 2016 because it combines high yield potential with excellent disease tolerance. FloRunTM ‘331’ has a typical runner growth habit with a semi-prominent central stem and medium green foliage.  It has medium runner seed size with high oleic oil chemistry.

Initiation, Development and Anatomy of Lignotubers in Some Species of Eucalyptus

1984 ◽  
Vol 32 (4) ◽  
pp. 415 ◽  
Author(s):  
DJ Carr ◽  
R Jahnke ◽  
SGM Carr
Keyword(s):  
Analytical Study ◽  
Growth Habit ◽  
Stem Growth ◽  
Morphological Development ◽  
Alternative Pathways ◽  
Stem Wood ◽  
Initial Survey ◽  
And Performance ◽  
Lateral Fusion ◽  
Taxonomic Groups

An initial survey of the diversity of early lignotuber development in Eucalyptus and an analytical study of the anatomy of young lignotubers and the seedling stem are presented. Studies of the early stages of the morphological development of the lignotuber in 13 species, representative of five taxonomic groups, resulted in the recognition of four modes of lignotuber initiation. The importance to lignotuber formation of the presence of a suite of accessory buds, adaxial to the axillary bud, is emphasized but lignotuber initiation is not in all cases associated with these buds. Lignotuber buds are derived by branching from existing buds, ultimately from the accessory buds of the node. Following its initiation, the possibilities of later morphological development of the lignotuber are discussed. Lignotuber growth may dominate over stem growth and the lignotubers at a node may then fuse laterally to encircle the stem. Stem growth, on the other hand, may dominate over lignotuber growth and the lignotuber then appears to regress. The consequences for the growth habit of the plant of these alternative pathways of development are outlined. The wood of young lignotubers (and that of the swollen hypocotyl) is shown to be different in composition and in the sizes of its elements from that of seedling stem wood; these differences owe their origin to differences in the nature and performance of the cambia of the lignotuber and stem. In lateral fusion of the lignotubers at a node, and their upward and downwards extension over the stem, e.g. over the hypocotyl, stem cambial initials are either progressively lost or, more likely, converted to lignotuber-type initials. The possibility of the reverse process occumng in stem dominance is discussed.

scholarly journals Genetic Diversity of Selected Rice Genotypes under Water Stress Conditions

Plants ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 27
Author(s):  
Mahmoud M. Gaballah ◽  
Azza M. Metwally ◽  
Milan Skalicky ◽  
Mohamed M. Hassan ◽  
Marian Brestic ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Water Stress ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Ssr Markers ◽  
Similarity Index ◽  
Stress Conditions ◽  
Yield Potential ◽  
Drought Tolerant ◽  
Rice Genotypes

Drought is the most challenging abiotic stress for rice production in the world. Thus, developing new rice genotype tolerance to water scarcity is one of the best strategies to achieve and maximize high yield potential with water savings. The study aims to characterize 16 rice genotypes for grain and agronomic parameters under normal and drought stress conditions, and genetic differentiation, by determining specific DNA markers related to drought tolerance using Simple Sequence Repeats (SSR) markers and grouping cultivars, establishing their genetic relationship for different traits. The experiment was conducted under irrigated (normal) and water stress conditions. Mean squares due to genotype × environment interactions were highly significant for major traits. For the number of panicles/plants, the genotypes Giza179, IET1444, Hybrid1, and Hybrid2 showed the maximum mean values. The required sterility percentage values were produced by genotypes IET1444, Giza178, Hybrid2, and Giza179, while, Sakha101, Giza179, Hybrid1, and Hybrid2 achieved the highest values of grain yield/plant. The genotypes Giza178, Giza179, Hybrid1, and Hybrid2, produced maximum values for water use efficiency. The effective number of alleles per locus ranged from 1.20 alleles to 3.0 alleles with an average of 1.28 alleles, and the He values for all SSR markers used varied from 0.94 to 1.00 with an average of 0.98. The polymorphic information content (PIC) values for the SSR were varied from 0.83 to 0.99, with an average of 0.95 along with a highly significant correlation between PIC values and the number of amplified alleles detected per locus. The highest similarity coefficient between Giza181 and Giza182 (Indica type) was observed and are susceptible to drought stress. High similarity percentage between the genotypes (japonica type; Sakha104 with Sakha102 and Sakha106 (0.45), Sakha101 with Sakha102 and Sakha106 (0.40), Sakha105 with Hybrid1 (0.40), Hybrid1 with Giza178 (0.40) and GZ1368-S-5-4 with Giza181 (0.40)) was also observed, which are also susceptible to drought stress. All genotypes are grouped into two major clusters in the dendrogram at 66% similarity based on Jaccard’s similarity index. The first cluster (A) was divided into two minor groups A1 and A2, in which A1 had two groups A1-1 and A1-2, containing drought-tolerant genotypes like IET1444, GZ1386-S-5-4 and Hybrid1. On the other hand, the A1-2 cluster divided into A1-2-1 containing Hybrid2 genotype and A1-2-2 containing Giza179 and Giza178 at coefficient 0.91, showing moderate tolerance to drought stress. The genotypes GZ1368-S-5-4, IET1444, Giza 178, and Giza179, could be included as appropriate materials for developing a drought-tolerant variety breeding program. Genetic diversity to grow new rice cultivars that combine drought tolerance with high grain yields is essential to maintaining food security.

scholarly journals Genotyping of Peach and Nectarine Cultivars with SSR and SRAP Molecular Markers

2004 ◽  
Vol 129 (2) ◽  
pp. 204-210 ◽  
Author(s):  
Riaz Ahmad ◽  
Dan Potter ◽  
Stephen M. Southwick
Keyword(s):  
Molecular Markers ◽  
Ssr Markers ◽  
Simple Sequence Repeat ◽  
Sweet Cherry ◽  
Prunus Persica ◽  
Sequence Repeat ◽  
Srap Markers ◽  
Upgma Cluster Analysis ◽  
Commercially Important ◽  
Simple Sequence

Simple sequence repeat (SSR) and sequence related amplified polymorphism (SRAP) molecular markers were evaluated for detecting intraspecific variation in 38 commercially important peach and nectarine (Prunus persica) cultivars. Out of the 20 SSR primer pairs 17 were previously developed in sweet cherry and three in peach. The number of putative alleles revealed by SSR primer pairs ranged from one to five showing a low level of genetic variability among these cultivars. The average number of alleles per locus was 2.2. About 76% of cherry primers produced amplification products in peach and nectarine, showing a congeneric relationship within Prunus species. Only nine cultivars out of the 38 cultivars could be uniquely identified by the SSR markers. For SRAP, the number of fragments produced was highly variable, ranging from 10 to 33 with an average of 21.8 per primer combination. Ten primer combinations resulted in 49 polymorphic fragments in this closely related set of peaches and nectarines. Thirty out of the 38 peach and nectarine cultivars were identified by unique SRAP fingerprints. UPGMA Cluster analysis based on the SSR and SRAP polymorphic fragments was performed; the relationships inferred are discussed with reference to the pomological characteristics and pedigree of these cultivars. The results indicated that SSR and SRAP markers can be used to distinguish the genetically very close peach and nectarine cultivars as a complement to traditional pomological studies. However, for fingerprinting, SRAP markers appear to be much more effective, quicker and less expensive to develop than are SSR markers.

scholarly journals Stem growth habit affects leaf morphology and gas exchange traits in soybean

2009 ◽  
Vol 104 (7) ◽  
pp. 1293-1299 ◽  
Author(s):  
Yu Tanaka ◽  
Tatsuhiko Shiraiwa
Keyword(s):  
Gas Exchange ◽  
Leaf Morphology ◽  
Growth Habit ◽  
Stem Growth

scholarly journals Bulked Segregant Analysis Identifies Molecular Markers Linked to Melampsora medusae Resistance in Populus deltoides

2000 ◽  
Vol 90 (9) ◽  
pp. 1039-1042 ◽  
Author(s):  
G. M. Tabor ◽  
T. L. Kubisiak ◽  
N. B. Klopfenstein ◽  
R. B. Hall ◽  
H. S. McNabb McNabb
Keyword(s):  
Molecular Markers ◽  
Leaf Rust ◽  
Populus Deltoides ◽  
Bulked Segregant Analysis ◽  
Random Amplified Polymorphic Dna ◽  
Genetic Distances ◽  
Resistance Locus ◽  
The North ◽  
Melampsora Medusae ◽  
Central United States

In the north central United States, leaf rust caused by Melampsora medusae is a major disease problem on Populus deltoides. In this study we identified molecular markers linked to a M. medusae resistance locus (Lrd1) that was segregating 1:1 within an intraspecific P. deltoides family (C9425DD). Previous field results were confirmed in the controlled environment of a growth chamber through an excised whole-leaf inoculation method. Using bulked segregant analysis we identified two random amplified polymorphic DNA (RAPD) markers (OPG10340 and OPZ191800) that are linked to Lrd1. Based on segregation in a total of 116 progeny, the genetic distances between OPG10340 and OPZ191800 and the resistance locus were estimated as 2.6 and 7.4 Haldane centimorgans (cM), respectively. Multipoint linkage analyses strongly suggest the most likely order for these loci is Lrd1, OPG10340, and OPZ191800. These markers may prove to be instrumental in the eventual cloning of Lrd1, as well as for marker-assisted selection of leaf-rust resistant genotypes.

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