Revision of the genus Haplomesus (Isopoda:Asellota:Ischnomesidae) with erection of four new genera

2007 ◽  
Vol 21 (5) ◽  
pp. 487 ◽  
Author(s):  
Fiona A. Kavanagh ◽  
George D. F. Wilson
Keyword(s):  
Phylogenetic Analysis ◽  
Missing Data ◽  
Sensu Stricto ◽  
Species Level ◽  
Type Material ◽  
New Genera ◽  
Identification Of Species

This paper presents a revision of Haplomesus Richardson, 1908 (Ischnomesidae). Poor character definition, ineffective diagnosis of the genus and inadequate or poor descriptions and illustrations have resulted in difficulties in identification of species and generic membership. This study is based on type material and descriptions in the literature and encompasses 28 species. Four new genera are created, justified by a phylogenetic analysis of 37 ingroup taxa and two outgroup taxa. Three species of the ingroup were excluded owing to missing data. Four species are retained in Haplomesus sensu stricto, two species are removed to Cornuamesus, gen. nov., 11 species are removed to Fortimesus, gen. nov. and 12 species are removed to Gracilimesus, gen. nov. One species, Haplomesus franklinae Merrin & Poore, 2003 is removed from the group and placed in Contrarimesus, gen. nov. with another species, Ischnomesus curtispinis Brandt, 1992. The species level is conferred on Haplomesus insignis orientalis Birstein, 1960. Haplomesus quadrispinosus sensu Brandt (1992) is removed from H. quadrispinosus (Sars, 1879) and Haplomesus ?gorbunovi sensu Svavarsson (1984) is removed from Gracilimesus gorbunovi (Gurjanova, 1946).

scholarly journals Ingolfiellidea (Crustacea, Malacostraca, Amphipoda): a phylogenetic and biogeographic analysis

2003 ◽  
Vol 72 (1) ◽  
pp. 39-72 ◽  
Author(s):  
Ronald Vonk ◽  
Frederick R. Schram
Keyword(s):  
Phylogenetic Analysis ◽  
Geographic Distribution ◽  
Type Material ◽  
Historical Overview ◽  
New Genera ◽  
Head Region ◽  
Relict Species ◽  
Ecological Characteristics ◽  
Definition Of ◽  
Biogeographic Analysis

The suborder Ingolfiellidea currently consists of 39 named species. An historical overview is presented and phylogenetic and biogeographic analyses are made. The result of the phylogenetic analysis suggests the definition of two new genera within an African freshwater group, namely Paraleleupia n. gen. and Proleleupia n. gen. Re-examination of a supposedly Italian relict species, Metaingolfiella mirabilis, with the aid of SEM techniques reveals a half-fusion of the head region with the first pereionite. The issue of the function of the ‘eyelobe’ is addressed and an explanation presented after examining with SEM such lobes in different species. Furthermore, additional descriptions are given based on the type-material of Metaingolfiella mirabilis, Trogloleleupia eggerti, Trogloleleupia leleupi, Ingolfiella littoralis, I. tabularis, I. margaritae, I. quadridentata, and I. abyssi. An attempt to relate the geographic distribution and ecological characteristics to the phylogeny of the Ingolfiellidea results in a paleogeographic scenario that points to a freshwater subterranean origin for the group that dates from at least Triassic times.

Generic concepts in the Platycrinitidae Austin and Austin, 1842 (class Crinoidea)

2009 ◽  
Vol 83 (5) ◽  
pp. 694-717 ◽  
Author(s):  
William I. Ausich ◽  
Thomas W. Kammer
Keyword(s):  
Type Species ◽  
Western Europe ◽  
Sensu Stricto ◽  
Species Level ◽  
Junior Synonym ◽  
Late Paleozoic ◽  
New Genera ◽  
The Family ◽  
Nomina Dubia ◽  
Stratigraphic Ranges

Platycrinitesis traditionally one of the more recognizable crinoids, a camerate crinoid with very few if any fixed brachials or interradials and a helically twisted column. Accordingly, many taxa have been assigned to this genus. With a better understanding of the Platycrinitidae, these characters actually unite the family Platycrinitidae rather than the genus. Further, use of different genus-diagnostic characters in Western Europe versus North America has resulted in a confused systematics for this important late Paleozoic family. Here, we objectively define genera within the Platycrinitidae and assign all species to either newly defined or newly named genera. A phylogenetic hypothesis, incorporating both parsimony-based character analysis and stratigraphic ranges, of the genera within the Platycrinitidae is presented.With consideration of the type species,Platycrinites laevisMiller, 1821,Platycrinitessensu stricto is distinguished fromPlatycrinitessensu lato, which is used for species that cannot be assigned with confidence to any objectively defined genus. New genera areArtaocrinusn. gen.,Collicrinusn. gen.,Elegantocrinusn. gen., andLaticrinusn. gen.; andExsulacrinusBowsher and Strimple, 1986 is designated a junior synonym ofPlatycrinitess.s.Collicrinus shumardin. gen. and sp.,Laticrinus owenin. gen. and sp., andLaticrinus wachsmuthin. gen. and sp. are described; andPlatycrinites formosus approximatus(Miller and Gurley, 1896a) is designated a junior synonym ofPlatycrinites formosus(Miller and Gurley, 1895a), which is reassigned here toCollicrinusn. gen.Platycrinitess.s. now includes 14 species and species-level taxa, and 76 species are assigned toPlatycrinitess.l. Ten species are designated nomina dubia, as are taxa based solely on columnals or pluricolumnals. Two species are designated nomina nuda, and two are transferred to genera outside of the Platycrinitidae. In addition, twenty-seven species and four open-nomenclature taxa are each reassigned to a different genus.

A new family and two new genera of calcaxonian octocoral, including a redescription of Pleurogorgia militaris (Cnidaria:Octocorallia:Chrysogorgiidae) and its placement in a new genus

2021 ◽  
Author(s):  
Stephen D. Cairns ◽  
Ralf T. S. Cordeiro ◽  
Yu Xu ◽  
Zifeng Zhan ◽  
Philip Alderslade
Keyword(s):  
Deep Sea ◽  
Type Species ◽  
New Genus ◽  
Sensu Stricto ◽  
Type Material ◽  
New Genera ◽  
New Family ◽  
Phylogenetic Reconstructions ◽  
The Family ◽  
Molecular Phylogenetic

Golden corals (chrysogorgiids sensu lato) are conspicuous components in deep-sea gorgonian assemblages. Although common, their taxonomy still conflicts with evolutionary histories, mostly due to low character availability and poor taxonomic knowledge. This is the case for the genus Pleurogorgia, which has been frequently reported in ROV surveys, dominating hard-bottoms throughout the Indo-Pacific. Herein, molecular phylogenetic reconstructions based on mitochondrial and nuclear datasets, and examination of new and old type material led us to suggest new systematic arrangements for some of the genera. We create a new genus, Ramuligorgia, to accommodate Pleurogorgia militaris, redescribing it as Ramuligorgia militaris comb. nov. within the family Chrysogorgiidae sensu stricto. Additionally, we describe Aurogorgia tasmaniensis gen. nov. et sp. nov., including it and the type species, Pleurogorgia plana, within Pleurogorgiidae fam. nov.

Phylogeny, taxonomy and distribution of the Neotropical lizard genus Echinosaura (Squamata: Gymnophthalmidae), with the recognition of two new genera in Cercosaurinae

2019 ◽  
Vol 189 (1) ◽  
pp. 287-314
Author(s):  
Juan D Vásquez-Restrepo ◽  
Roberto Ibáñez ◽  
Santiago J Sánchez-Pacheco ◽  
Juan M Daza
Keyword(s):  
Phylogenetic Analysis ◽  
Central America ◽  
Species Level ◽  
New Genera ◽  
The Family ◽  
Taxonomic Changes ◽  
Molecular Dataset ◽  
Northern South America ◽  
Taxonomic Studies ◽  
First Time

Abstract The family Gymnophthalmidae is a highly diverse Neotropical lizard clade. Although multiple phylogenetic and taxonomic studies have reshaped our understanding of gymnophthalmid systematics and diversity, many groups remain understudied. This is the case for the cercosaurine genus Echinosaura, which includes eight species of small riparian lizards distributed across lower Central America and northern South America. Here, we present a comprehensive phylogenetic analysis of Echinosaura, including DNA data for all species of the genus for the first time. To rigorously test the relationships of all Echinosaura, we have assembled the largest molecular dataset of cercosaurine lizards to date. Our analysis refutes the monophyly of Echinosaura, with E. apodema and E. sulcarostrum not closely related to the remaining species. To remedy the polyphyly of Echinosaura, we describe two new genera for E. apodema and E. sulcarostrum. Morphological distinctiveness and biogeography further support these taxonomic changes. In light of our phylogenetic results, we review the species-level taxonomy of the redefined Echinosaura based on morphological and genetic variation. We resurrect E. centralis and designate a neotype given the absence of type and topotypic material. In addition, we provide taxonomic accounts for each species and analyse their patterns of geographic distribution.

scholarly journals Paracoccidioides brasiliensis Isolated from Nine-Banded Armadillos (Dasypus novemcinctus) Reveal Population Structure and Admixture in the Amazon Basin

2021 ◽  
Vol 7 (1) ◽  
pp. 54
Author(s):  
Eduardo Bagagli ◽  
Daniel Ricardo Matute ◽  
Hans Garcia Garces ◽  
Bernardo Guerra Tenório ◽  
Adalberto Garcia Garces ◽  
...  
Keyword(s):  
Population Structure ◽  
Latin America ◽  
Endemic Area ◽  
Amazon Basin ◽  
Paracoccidioides Brasiliensis ◽  
Pathogenic Fungi ◽  
Sensu Stricto ◽  
Species Level ◽  
Dasypus Novemcinctus ◽  
Show Evidence

Paracoccidioidomycosis is an endemic fungal disease to Latin America caused by at least five species-level genotypes of Paracoccidioides, named P. lutzii, P. brasiliensis (S1a and S1b populations), P. americana, P. restrepiensis, and P. venezuelensis. In this manuscript, we report on Paracoccidioides sp. sampling efforts in armadillos from two different areas in Brazil. We sequenced the genomes of seven Paracoccidioides isolates and used phylogenomics and populations genetics for genotyping. We found that P. brasiliensis and P. lutzii are both present in the Amazon region. Additionally, we identified two Paracoccidioides isolates that seem to be the result of admixture between divergent populations within P. brasiliensis sensu stricto. Both of these isolates were recovered from armadillos in a P. lutzii endemic area in Midwestern Brazil. Additionally, two isolates from human patients also show evidence of resulting from admixture. Our results suggest that the populations of P. brasiliensis sensu stricto exchange genes in nature. More generally, they suggest that population structure and admixture within species is an important source of variation for pathogenic fungi.

Corrigendum to: Lamprothamnium in Australia (Characeae, Charophyceae)

2013 ◽  
Vol 26 (6) ◽  
pp. 475
Author(s):  
Michelle T. Casanova
Keyword(s):  
New Species ◽  
Species Level ◽  
Type Material ◽  
Review Of The Literature ◽  
Comprehensive Review ◽  
The Past

Charophytes in the genus Lamprothamnium exhibit a large amount of diversity, particularly in the examples from Australia, although little of that variation has been recognised at species level in the past. The Australian members of the genus are revised here on the basis of extensive new collections, examination of specimens in herbaria and comprehensive review of the literature and available type material. The existing species Lamprothamnium macropogon (A.Braun) Ophel, L. inflatum (Fil. & G.O.Allen ex Fil.) A.García & Karol and L. heraldii A.García & Casanova are retained, eight new species are described (L. australicum Casanova, L. beilbyae Casanova, L. capitatum Casanova, L. compactum Casanova, L. coorongense Casanova, L. diminutum Casanova, L. macroanthum Casanova and L. stipitatum Casanova) and two taxa variously treated at infraspecific rank in Lychnothamnus are transferred to Lamprothamnium at species rank (L. cockajemmyense Casanova, L. tasmanicum (A.Braun) Casanova). Neither L. papulosum (Wallr.) J.Groves nor L. succinctum (A.Braun) R.D.Wood are confirmed for Australia after examination of the type material of these species. Species are distinguished by the arrangement of the gametangia, morphology of the fertile whorls and characteristics of the oospores. Four of these species are dioecious and nine are monoecious, which supports published conjectures concerning the biogeography of charophyte species (Proctor (1980): J. Phycol. 16, 218–233, doi:10.1111/j.1529-8817.1980.tb03023.x).

scholarly journals Reclassification of Lactobacillus catenaformis (Eggerth 1935) Moore and Holdeman 1970 and Lactobacillus vitulinus Sharpe et al. 1973 as Eggerthia catenaformis gen. nov., comb. nov. and Kandleria vitulina gen. nov., comb. nov., respectively

2011 ◽  
Vol 61 (10) ◽  
pp. 2520-2524 ◽  
Author(s):  
Elisa Salvetti ◽  
Giovanna E. Felis ◽  
Franco Dellaglio ◽  
Anna Castioni ◽  
Sandra Torriani ◽  
...  
Keyword(s):  
Type Strain ◽  
Type Species ◽  
16S Rrna Gene Sequencing ◽  
Sensu Stricto ◽  
Rrna Gene ◽  
New Genera ◽  
Molecular Tools ◽  
Phylogenetic Information ◽  
Rrna Gene Sequencing ◽  
Bacterial Groups

The development of molecular tools and in particular the use of 16S rRNA gene sequencing has had a profound effect on the taxonomy of many bacterial groups. Gram-positive organisms that encompass the genera Lactobacillus and Clostridium within the Firmicutes are examples of taxa that have undergone major revisions based on phylogenetic information. A consequence of these reorganizations is that a number of organisms are now recognized as being misclassified. Previous studies have demonstrated that Lactobacillus catenaformis and Lactobacillus vitulinus are phylogenetically unrelated to Lactobacillus sensu stricto, being placed within the Clostridia rRNA cluster XVII. Based on the phenotypic, chemotaxonomic and phylogenetic data presented, it is proposed that L. catenaformis and L. vitulinus be reclassified in two new genera, named respectively Eggerthia gen. nov., with the type species Eggerthia catenaformis gen. nov., comb. nov. (type strain DSM 20559T = ATCC 25536T = CCUG 48174T = CIP 104817T = JCM 1121T) and Kandleria gen. nov., with the type species Kandleria vitulina gen. nov., comb. nov. (type strain LMG 18931T = ATCC 27783T = CCUG 32236T = DSM 20405T = JCM 1143T).

Phylogeny accurately predicts behaviour in Indian Ocean Clitaetra spiders (Araneae:Nephilidae)

2009 ◽  
Vol 23 (3) ◽  
pp. 193 ◽  
Author(s):  
Matjaž Kuntner ◽  
Ingi Agnarsson
Keyword(s):  
South Africa ◽  
Phylogenetic Analysis ◽  
Indian Ocean ◽  
Species Level ◽  
Web Architecture ◽  
Evolutionarily Conserved ◽  
The Family ◽  
Behavioural Biology

Phylogenies are underutilised, powerful predictors of traits in unstudied species. We tested phylogenetic predictions of web-related behaviour in Clitaetra Simon, 1889, an Afro-Indian spider genus of the family Nephilidae. Clitaetra is phylogenetically sister to all other nephilids and thus important for understanding ancestral traits. Behavioural information on Clitaetra has been limited to only C. irenae Kuntner, 2006 from South Africa which constructs ladder webs. A resolved species-level phylogeny unambiguously optimised Clitaetra behavioural biology and predicted web traits in five unstudied species and a uniform intrageneric nephilid web biology. We tested these predictions by studying the ecology and web biology of C. perroti Simon, 1894 on Madagascar and C. episinoides Simon, 1889 on Mayotte. We confirm predicted arboricolous web architecture in these species. The expected ontogenetic allometric transition from orbs in juveniles to elongate ladder webs in adults was statistically significant in C. perroti, whereas marginally not significant in C. episinoides. We demonstrate the persistence of the temporary spiral in finished Clitaetra webs. A morphological and behavioural phylogenetic analysis resulted in unchanged topology and persisting unambiguous behavioural synapomorphies. Our results support the homology of Clitaetra hub reinforcement with the nephilid hub-cup. In Clitaetra, behaviour was highly predictable and remained consistent with new observations. Our results confirm that nephilid web biology is evolutionarily conserved within genera.

scholarly journals A new family of dissimilarity metrics for discrete character matrices that include inapplicable characters and its importance for disparity studies

2018 ◽  
Vol 285 (1892) ◽  
pp. 20181784 ◽  
Author(s):  
Melanie J. Hopkins ◽  
Katherine St John
Keyword(s):  
Phylogenetic Analysis ◽  
Missing Data ◽  
Rank Order ◽  
Software Tools ◽  
Weighting Schemes ◽  
New Family ◽  
Discrete Character ◽  
Secondary Characters

The use of discrete character data for disparity analyses has become more popular, partially due to the recognition that character data describe variation at large taxonomic scales, as well as the increasing availability of both character matrices co-opted from phylogenetic analysis and software tools. As taxonomic scope increases, the need to describe variation leads to some characters that may describe traits not found across all the taxa. In such situations, it is common practice to treat inapplicable characters as missing data when calculating dissimilarity matrices for disparity studies. For commonly used dissimilarity metrics like Wills's GED and Gower's coefficient, this can lead to the reranking of pairwise dissimilarities, resulting in taxa that share more primary character states being assigned larger dissimilarity values than taxa that share fewer. We introduce a family of metrics that proportionally weight primary characters according to the secondary characters that describe them, effectively eliminating this problem, and compare their performance to common dissimilarity metrics and previously proposed weighting schemes. When applied to empirical datasets, we confirm that choice of dissimilarity metric frequently affects the rank order of pairwise distances, differentially influencing downstream macroevolutionary inferences.

Identification of multiple species and subpopulations among Australian clinical Sporothrix isolates using whole genome sequencing

2018 ◽  
Vol 57 (7) ◽  
pp. 905-908 ◽  
Author(s):  
David New ◽  
Alicia G Beukers ◽  
Sarah E Kidd ◽  
Adam J Merritt ◽  
Kerry Weeks ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Sporothrix Schenckii ◽  
Sensu Stricto ◽  
Northern Territory ◽  
Whole Genome ◽  
Phylogenetic Resolution ◽  
Genetic Clustering ◽  
Multiple Species

AbstractWhole genome sequencing (WGS) was used to demonstrate the wide genetic variability within Sporothrix schenckii sensu lato and establish that there are two main species of Sporothrix within Australian clinical isolates—S. schenckii sensu stricto and Sporothrix globosa. We also demonstrated southwest Western Australia contained genetically similar S. schenckii ss strains that are distinct from strains isolated in the eastern and northern states of Australia. Some genetic clustering by region was also noted for northern NSW, Queensland, and Northern Territory. Phylogenetic analysis of WGS data provided greater phylogenetic resolution compared to analysis of the calmodulin gene alone.

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