The Kinetics of Reactions in and Near the Cytochrome b/f Complex of Chloroplast Thylakoids. I. Proton Deposition

1988 ◽  
Vol 15 (5) ◽  
pp. 695 ◽  
Author(s):  
AB Hope ◽  
J Liggins ◽  
DB Matthews

The kinetics of proton deposition in the intrathylakoid spaces of pea chloroplasts were measured under a wide range of conditions. With duroquinol added to reduce the plastoquinone pool, and 3-(3,4-dichlorophenyl)-1,1-dimethylurea added to inhibit photosystem II, but no ionophore present, the proton deposition, attributed to plastoquinol oxidation, was biphasic. About half the deposition had an apparent rate constant (k) of 150-200 s-1, the other half about 10 s-1. Valinomycin or nonactin (<0.1 �M) plus potassium ions made the deposition almost monophasic, with k = 140 s-1. When the state of reduction of the plastoquinone pool was varied by the addition of varied concentrations of duroquinol, in the presence of 1 �M nonactin, k for proton deposition varied from about 20 (0.01 mM duroquinol) up to a maximum of 140 s-1 (0.5 mM duroquinol). When temperature was varied between 4 and 23°C, with 1 �M nonactin, an Arrhenius plot of ln(k) for proton deposition was linear; the activation enthalpy was 67 kJ mol-1, the entropy of activation, 23 J K-1 mol-1. The data are analysed in terms of a bimolecular reaction between a varying concentration of plastoquinol and a fixed concentration of oxidised Rieske centre. The results are consistent with a rate constant, for the first electron donation by plastoquinol, of 28 s-1 (the rate-limiting step), followed by a relatively fast second electron donation to cytochrome b563 (low potential), followed by deposition of two protons. The speed of the second proton deposition is dependent on the membrane potential difference.

1999 ◽  
Vol 64 (10) ◽  
pp. 1654-1672 ◽  
Author(s):  
Miroslav Ludwig ◽  
Iva Bednářová ◽  
Patrik Pařík

Four N-(phenylazo)-substituted saturated nitrogen heterocyclics were synthesized and their structure was confirmed by 1H and 13C NMR spectroscopy. The kinetics of their acid-catalyzed decomposition were studied at various concentrations of the catalyst (pivalic acid) in 40, 30, and 20% (v/v) aqueous ethanol at 25 °C. The values obtained for the observed rate constants were processed by the non-linear regression method according to the suggested kinetic models and by the method of principal component analysis (PCA). The interpretation of the results has shown that the acid-catalyzed decomposition of the heterocyclics under the conditions used proceeds by the mechanism of general acid catalysis, the proton being the dominant catalyst particle of the rate-limiting step. The decrease in the observed rate constant at higher concentrations of the catalyst was explained by the formation of a non-reactive complex composed of the undissociated acid and the respective N-(phenylazo)heterocycle. The effect of medium and steric effect of the heterocyclic moiety on the values of catalytic rate constant are discussed.


1989 ◽  
Vol 16 (4) ◽  
pp. 353 ◽  
Author(s):  
AB Hope ◽  
J Liggins ◽  
DB Matthews

The reduction of cytochrome b-563 was measured following flash-induced electron transfer from duroquinol to methyl viologen, in the presence of 3,(3,4-dichlorophenyl)-1,1-dimethyl urea and 1 �M nonactin or 1 �M valinomycin (plus 10 mM K+). The apparent rate constant of this reduction (nonactin present) increased from about 100 s-1 to 460 s-1 as the external concentration of duroquinol was varied from 0.01 to 0.5 mM. The corresponding maximum extent of reduction of cytochrome b-563 varied from 0.13 to 0.27 molecules per b/f complex. Rate constants in the presence of valinomycin were lower at all concentrations of duroquinol by a factor of about 1.5. The mean enthalpy of activation calculated from Arrhenius plots of apparent rate constant for cytochrome b-563 reduction was 60 kJ mol-1, for temperature variation between 23 and 4°C. The above, and further data in oxidising conditions, and with added 2-n-nonyl-4-hydroxyquinoline N-oxide, together with data on proton deposition, were compared with the predictions of a kinetic model. In this model, flash-generated oxidised plastocyanin oxidised Rieske centres during random diffusion, and plastoquinol reduced the Rieske centres and cytochrome b-563 sequentially; subsequent electron and proton transfers followed those in a Q-cycle. Many observations were predicted by the model, in which the rate-limiting step was the first electron transfer from plastoquinol to the Rieske centre, subsequent steps being much faster. The rate and extent of reduction of cytochrome b-563 were fully consistent with a reaction between it and a radical form of plastoquinone formed after oxidation of the latter by Rieske centres (referred to as 'oxidant-induced reduction'), under a wide range of conditions.


1993 ◽  
Vol 335 ◽  
Author(s):  
Bruce H. Weiller

AbstractThe gas-phase chemical reaction between Ti(NMe2)4 and NH3 is a critical step in the Metallorganic Chemical Vapor Deposition (MOCVD) of TiN at low temperatures. We have examined this reaction using a flow-tube reactor coupled to an FTIR spectrometer. A sliding injector provides control over the reaction time and the kinetics of reactive species can be measured as a function of the partial pressure of an added reagent. The disappearance of Ti(NMe2)4 was measured as a function of reaction time and NH3 pressure at 26°C. The resulting bimolecular rate constant is (1.1±0. 1) x 10-16 cm3molecules−1s−1 Dimethylamine is observed as a direct product from this reaction consistent with other studies. We have also measured the rate constant using ND3 and find a substantial isotope effect, kh/kd ≈2.4± 0.4. This indicates that H-atom transfer is involved in the rate limiting step. We show that these results can be explained by a mechanism comprised of transamination reactions with NH3.


1986 ◽  
Vol 51 (3) ◽  
pp. 677-683 ◽  
Author(s):  
Jaromír Kaválek ◽  
Josef Panchartek ◽  
Tomáš Potěšil ◽  
Vojeslav Štěrba

Kinetics have been studied of hydrolysis and methanolysis of ethyl 3-ethoxy-3-iminopropanoate. The methanolysis rate constant is lower than the hydrolysis rate constant by about 3 orders of magnitude. The rate-limiting step of the hydrolysis consists in the nucleophilic attack of the protonated substrate by a water molecule, whereas that of the methanolysis consists in the decomposition of tetrahedral intermediate which is several orders of magnitude slower than the decomposition of the intermediate formed in the hydrolysis.


1996 ◽  
Vol 61 (5) ◽  
pp. 751-763 ◽  
Author(s):  
Oldřich Pytela ◽  
Aleš Halama

Eight derivatives of 1-(2-alkoxycarbonylphenyl)-3-phenyltriazene (R = methyl, ethyl, propyl, isopropyl, butyl, isobutyl, hexyl, and allyl) have been synthesized and their UV-VIS, IR, 1H and 13C NMR spectra measured. The NMR spectra have been interpreted in detail. The kinetics of acid-catalyzed decomposition and base-catalyzed cyclization of the title compounds have been measured in 52.1% w/w methanol at 25.0 °C. The unit reaction order has been verified and the cyclization product has been identified. The pH-profiles obtained have been used to calculate the catalytic rate constants kA (acid-catalyzed decomposition) and kB (base-catalyzed cyclization) of all the derivatives; the constants have been interpreted with regard to inductive and steric effects. The catalytic rate constant kA has been found to be independent of the substituents. The catalytic rate constant kB depends statistically significantly upon both inductive and steric effects, the sensitivity to the former being more significant. The experimental results and their interpretation confirm the base-catalyzed cyclization mechanism with formation of tetrahedral intermediate as the rate-limiting step.


1979 ◽  
Vol 44 (3) ◽  
pp. 912-917 ◽  
Author(s):  
Vladimír Macháček ◽  
Said A. El-bahai ◽  
Vojeslav Štěrba

Kinetics of formation of 2-imino-4-thiazolidone from S-ethoxycarbonylmethylisothiouronium chloride has been studied in aqueous buffers and dilute hydrochloric acid. The reaction is subject to general base catalysis, the β value being 0.65. Its rate limiting step consists in acid-catalyzed splitting off of ethoxide ion from dipolar tetrahedral intermediate. At pH < 2 formation of this intermediate becomes rate-limiting; rate constant of its formation is 2 . 104 s-1.


1991 ◽  
Vol 56 (8) ◽  
pp. 1701-1710 ◽  
Author(s):  
Jaromír Kaválek ◽  
Vladimír Macháček ◽  
Miloš Sedlák ◽  
Vojeslav Štěrba

The cyclization kinetics of N-(2-methylcarbonylphenyl)-N’-methylsulfonamide (IIb) into 3-methyl-(1H)-2,1,3-benzothiadiazin-4(3H)-one 2,2-dioxide (Ib) has been studied in ethanolamine, morpholine, and butylamine buffers and in potassium hydroxide solution. The cyclization is subject to general base and general acid catalysis. The value of the Bronsted coefficient β is about 0.1, which indicates that splitting off of the proton from negatively charged tetrahedral intermediate represents the rate-limiting and thermodynamically favourable step. In the solutions of potassium hydroxide the cyclization of dianion of the starting ester IIb probably becomes the rate-limiting step.


1986 ◽  
Vol 73 ◽  
Author(s):  
Bruce D. Kay ◽  
Roger A. Assink

ABSTRACTHigh resolution 1H NMR spectroscopy at high magnetic fields is employed to study the reaction kinetics of the Si(OCH3)4:CH3OH:H2O sol-gel system. Both the overall extent of reaction as a function of time and the equilibrium distribution of species are measured. In acid catalyzed solution, condensation is the rate limiting step while in base catalyzed solution, hydrolysis becomes rate limiting. A kinetic model in which the rate of hydrolysis is assumed to be independent of the adjacent functional groups is presented. This model correctly predicts the distribution of product species during the initial stages of the sol-gel reaction.


2013 ◽  
Vol 6s1 ◽  
pp. IJTR.S11737 ◽  
Author(s):  
Richard O. Williams

Indoleamine 2,3-dioxygenase (IDO) is the first and rate-limiting step along the kynurenine pathway and is thought to play a key role in immune homeostasis through depletion of tryptophan and accumulation of kynurenines. In this review we summarize recent research into the possibility of harnessing the IDO pathway for the therapy of rheumatoid arthritis. Inhibition of IDO activity, or knockout of the gene encoding IDO, was shown to cause an increase in the severity of collagen-induced arthritis, an animal model of rheumatoid arthritis. The increased severity of disease was associated with elevated numbers of pathogenic Th1 and Th17 cells in the joints and draining lymph nodes. In another study, analysis of the kinetics of expression of downstream kynurenine pathway enzymes during the course of arthritis revealed a potential role for tryptophan metabolites in resolution of arthritis. Furthermore, the therapeutic administration of L-kynurenine or [3,4-dimethoxycinnamonyl]-anthranilic acid (a synthetic derivative of 3-hydroxy-anthranilic acid) significantly reduced both clinical and histological progression of experimental arthritis. These findings raise the possibility of exploiting the IDO pathway for the therapy of autoimmune disease.


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