Genetic variation in Trithuria inconspicua and T. filamentosa (Hydatellaceae): a new subspecies and a hypothesis of apomixis arising within a predominantly selfing lineage

Author(s):  
Rob D. Smissen ◽  
Kerry A. Ford ◽  
Paul D. Champion ◽  
Peter B. Heenan

While examining herbarium specimens of Trithuria inconspicua Cheeseman, we observed differences in the stigmatic hairs among plants from New Zealand’s North and South Islands. This motivated us to assess genetic and morphological variation within this species and its sister T. filamentosa Rodway from Tasmania. Samples were collected from lakes in the three disjunct geographic areas where the two species occur. Genetic variation in both species was assessed with simple sequence-repeat (SSR, microsatellite) markers and analyses of genetic distances. We also compared the morphology of northern and southern New Zealand T. inconspicua using fresh material. Samples of each species clustered together in a minimum evolution tree built from genetic distances. Trithuria filamentosa had more genetic diversity than did T. inconspicua. Within T. inconspicua, plants from lakes in the North Island and the South Island formed discrete genetic groups diagnosable by subtle morphological differences. Low levels of heterozygosity in both species are consistent with a high level of selfing, as suggested for other co-sexual Trithuria species, but unusual for a putative apomict. On the basis of genetic and morphological variation, we propose recognition of the northern New Zealand and southern New Zealand lineages of T. inconspicua at subspecies rank.

Zootaxa ◽  
2010 ◽  
Vol 2496 (1) ◽  
pp. 49 ◽  
Author(s):  
STEPHEN C. DONNELLAN ◽  
KEN P. APLIN ◽  
TERRY BERTOZZI

Allozyme electrophoresis is used to explore molecular genetic relationships within the Rana arfaki group and between this group and selected lineages of New Guinean Rana. Rana jimiensis is confirmed as a species distinct from R. arfaki and its range in Papua New Guinea is extended to the Southern Highlands Province and the north-coastal ranges in Sandaun Province. Rana arfaki and R. jimiensis show a high level of genetic differentiation maintained across a wide geographic area and show consistent morphological differences in head shape, tympanum size, degree of digital disc dilation and extent of sexual dimorphism. The two species occur syntopically on the Papuan Plateau, Southern Highlands Province, and are regionally sympatric in Sandaun Province. The observed level of genetic differentiation is equivalent to that reported previously between regionally sympatric members of the Rana papua group. Populations of R. jimiensis from north and south of the central cordillera show no obvious morphological and only minor genetic differentiation. In contrast, R. arfaki shows considerable geographic variation in both morphology and allozymes and may include two or more regionally distinctive forms.


Genetika ◽  
2017 ◽  
Vol 49 (1) ◽  
pp. 247-258
Author(s):  
Deyana Hristova ◽  
Stoycho Metodiev ◽  
Vassil Nikolov ◽  
Dimitar Vassilev ◽  
Elena Todorovska

The aim of the study is focused on the design of a conservation sheep breeding programme for the studied autochthonous breeds based on SSR markers genetic variation analysis applied. Seven local Bulgarian autochthonous sheep breeds (Breznishka, Sofiiska, Copper-Red Shumenska, Karakachanska, Local Karnobatska, Blackhead Plevenska and Starozagorska) were differentiated using six microsatellite (SSR) markers, aiming to assess the genetic variation within and between breeds. Among the total of 96 identified alleles, eighteen population specific ones were detected across the all studied genotypes of 338 individuals, except in the Blackhead Plevenska sheep. All examined breeds indicated high level of genetic diversity, with an average of 0.792. The genetic differentiation between the examined sheep breeds was not significant and the values of genetic distances were relatively low. The analysis of molecular variances (AMOVA) showed low variation between the examined breeds (5.51%) in comparison to within population variation (94.49%). The greatest distance (0.643) was found between the populations Local Karnobatska and Starozagorska, while the smallest one (0.108), between the Copper-Red Shumenska and Karakachanska. The genetic distances calculated by Neighbour-Joining method, produced a phylogenetic tree which separates the investigated sheep breeds into two main clusters: one including Blackhead Plevenska Breznishka and Local Karnobatska, and the other one consisting of the four remaining breeds - Copper-Red Shumenska, Karakachanska, Sofiiska and Starozagorska sheep. The Factorial Correspondence Analysis (FCA) showed isolation of Local Karnobatska sheep and Starozagorska and an admixture of the other populations.


Phytotaxa ◽  
2018 ◽  
Vol 374 (1) ◽  
pp. 87
Author(s):  
PETER B. HEENAN ◽  
JAMIE R. WOOD ◽  
THERESA L. COLE

We report a partial cpDNA trnL sequence of 203 base pairs from the extinct legume Streblorrhiza speciosa that was obtained from herbarium specimens collected from Phillip Island, south-western Pacific Ocean, in 1836. Bayesian phylogenetic analysis of the trnL sequence of S. speciosa and those of other Fabaceae species placed S. speciosa as a member of the tribe Coluteae, along with the Australian and New Zealand genera Carmichaelia, Clianthus, Montigena and Swainsona. Smaller genetic distances and shared morphological features indicate stronger links within this group may exist between S. speciosa and Carmichaelia.


2011 ◽  
Vol 18 (2) ◽  
pp. 93-104 ◽  
Author(s):  
Fatemeh Mohammadzadeh ◽  
Hassan Monirifar ◽  
Jalal Saba ◽  
Mostafa Valizadeh ◽  
Ahmad Razban Haghighi ◽  
...  

Genetic diversity among and within 10 populations of Iranian alfalfa, from different areas of Azarbaijan, Iran was analyzed by screening DNA from seeds of individual plants and bulk samples. In individual study, 10 randomly amplified polymorphic DNA (RAPD) primers produced 156 polymorphic bands and a high level of genetic diversity was observed within populations. The averages of total and within population genetic diversity were 0.2349 and 0.1892, respectively. Results of analysis of molecular variance (AMOVA) showed the great genetic variation existed within populations (81.37%). These Results were in agreement with allogamous and polyploid nature of alfalfa. Cluster analysis was performed based on Nei’s genetic distances resulting in grouping into 3 clusters which could separate breeding population from other populations. Results of cluster analysis were in consistent with morphological and geographical patterns of populations. The results of bulk method were different from individual analysis. Our results showed that RAPD analysis is a suitable method to study genetic diversity and relationships among alfalfa populations.Keywords: Alfalfa; RAPD; Genetic diversity; Analysis of Molecular Variance; Cluster analysis.DOI: http://dx.doi.org/10.3329/bjpt.v18i2.9296Bangladesh J. Plant Taxon. 18: (2): 93-104, 2011 (December)


2015 ◽  
Vol 9 (1) ◽  
pp. 30-36
Author(s):  
Shikder Saiful Islam ◽  
Md. Saifuddin Shah ◽  
Foyez Ibn Shams ◽  
Md. Rayhan Ali ◽  
Md. Lifat Rahi

The level of genetic variation determines the genetic status and provides the raw material for selective improvement of a stock. Randomly amplified polymorphic DNA (RAPD) technique was used to assess the genetic variability of 7 different natural (2) and hatchery (5) populations of Indian Major Carp, Labeo rohita (Rohu) in Bangladsh. In total, 140 fish samples were collected (20 from each of the populations). Genomic DNA was extracted from the muscle tissue, and 5 different oligonucleotide primers were used which revealed 80% polymorphic DNA bands. The polymorphic loci proportions were 0.71, 0.75, 0.75, 0.85, 0.84, 0.86 and 0.89 for Ma-Fatema hatchery, Chowdhuri hatchery, Niribili hatchery, Sonali hatchery, Kapotakha hatchery, the Halda river and the Baluhor Baor populations respectively. The pair-wise population differentiation (FST) values indicated a high level of genetic variation between different populations. The Unweighted Pair Group Method of Arithmetic Mean (UPGMA) dendogram based on Nei’s genetic distances also revealed high level of inter-population genetic variation among the populations. The populations were segregated into two groups: the Halda River and Baluhar Baor hatchery in one group and Kapotakha, Ma-Fatema, Chowdhuri, Niribili and Sonali hatcheries in another group. Overall, RAPD results clearly indicate the reduced genetic quality of the hatchery seeds.DOI: http://dx.doi.org/10.3126/ijls.v9i1.11923 International Journal of Life Sciences Vol.9(1) 2015 30-36


Author(s):  
Hamish G. Spencer ◽  
Nicolas J. Rawlence

Ever since the first western scientists visited Aotearoa New Zealand, biologists have been fascinated by the relationships of New Zealand’s biota to that of the rest of the world. (Aotearoa is the usual Māori name for New Zealand; increasingly, the combination Aotearoa New Zealand is also used to refer to the country.) The presence of notable vertebrates (e.g., tuatara), together with a high level of endemism among plants and invertebrates, was clearly a consequence of the islands’ long geological isolation. However, some elements showed clear affinities with taxa elsewhere—Australia and South America, most prominently. Explaining the evolutionary history of this biodiversity was (and is) an attractive driver for much scientific research. Leading vicariance biogeographer Gareth Nelson even claimed that, from a biogeographic standpoint, New Zealand’s biota was the most important in the world: “Explain New Zealand and the world falls into place around it.” Biologist Jared Diamond described New Zealand’s biodiversity as “the nearest approach to life on another planet.” Part of the reason for New Zealand providing so many biogeographic puzzles and exemplars lies in its active geology, a consequence of its position across the boundary of the Australian and Pacific tectonic plates. Unlike most oceanic islands, New Zealand comprises continental crust, remnants of the now largely submerged continent of Zealandia, which extended beyond present-day New Caledonia to the north, Campbell Island to the south, and Chatham Island to the east. In addition, New Zealand has periodically been subject to marine transgressions of varying degree. This geological history has been conducive to in situ geographical speciation, which has made a major contribution to the current levels of biodiversity, with some groups (e.g., punctid landsnails) remarkably speciose. In addition, the fluctuations in sea level have resulted in an excellent marine fossil record (especially in the Cenozoic era). Quaternary ice ages rapidly changed the New Zealand landscape, repeatedly isolating plants and animals in glacial refugia. Finally, the late arrival of humans in Aotearoa New Zealand resulted in widespread extinctions and biological turnover events. New Zealand’s biodiversity is enhanced by its geographical and consequent climatic range. It consists of a chain of islands extending over ~2800 km, from the subtropical Kermadec Islands in the north, via the three main temperate islands (North, South and Stewart Islands) to a number of subantarctic islands (Snares, Auckland, Bounty, Antipodes and Campbell Islands) in the south, as well as the Chatham Islands in the east. The politically Australian subantarctic Macquarie Island is often also considered biogeographically neozelanic. Various debates in biogeography, most notably the disputes between the dispersalist school and the vicariance-panbiogeographers, have cited New Zealand examples and, indeed, involved New Zealand scientists. Obviously, the arguments for and against so called “Oligocene drowning”—whether or not all of proto-New Zealand was submersed ~27 million years ago (mya)—involved New Zealand scientists and examples. More generally, the resolution of this latter debate illustrated how to evaluate dispersalist and vicariance hypotheses using modern techniques and integrative approaches.


2000 ◽  
Vol 48 (3) ◽  
pp. 289 ◽  
Author(s):  
S. C. Donnellan ◽  
K. P. Aplin ◽  
P. J. Dempsey

An allozyme electrophoretic analysis of the geographically widespread, southern Australian gekkonid lizard Christinus marmoratus demonstrates the presence of a hithertofore unsuspected, second species of Christinus. The second species, which was found to be syntopic with the 2n = 36 ‘race’ of C. marmoratus on the south-western side of the Nullarbor Plain, is strikingly cryptic and possesses a very similar 2n =36 karyotype. Small but consistent morphological differences between the two species allow their wider distributions to be mapped in detail. As the holotype of Phyllodactylus m. alexanderi Storr is identified as an example of the second species, Storr’s taxon is elevated to a full species and redefined. The geographic pattern of genetic variation within C. marmoratus crosses the distribution of the four recorded chromosome ‘races’. Reanalysis of previously reported reproductive data reveals likely differences in the timing of gametogenesis between C. alexanderi and the sympatric 2n = 36 C. marmoratus. Males of C. alexanderi show maximal testicular enlargement approximately six months before fertilisation, suggestive of oviducal sperm storage through winter, whereas the 2n = 36 C. marmoratus shows greatest testicular volumes at the presumed time of fertilisation. While females of both taxa carry eggs during September–October; C. marmoratus invariably carry two eggs, but C. alexanderi have a single egg in 36% of cases.


1995 ◽  
Vol 8 (6) ◽  
pp. 1013 ◽  
Author(s):  
DA Morrison ◽  
AJ Rupp

Acacia suaveolens shows a considerable degree of morphological variability throughout its range in eastern Australia. Multivariate morphometric analyses of data from 375 herbarium specimens suggest that there are five polythetically distinct forms within this species. The morphological boundaries between these forms are somewhat arbitrary but are closely related to a number of environmental variables. Discrimination between these forms is possible only on the basis of a combination of attributes. In all cases, the distinctions between the forms are maintained in offspring plants grown under controlled environmental conditions, indicating that these morphological differences are genetically fixed. These forms are taxonomically treated as new subspecies. Apart from the typical form (subsp. suaveolens), which is widespread, the following morphological forms have been identified: a form with narrower phyllodes, restricted to the Holocene sand dunes in the Myall Lakes region (subsp. myallensis D. Morrison & A.J. Rupp); a form with wider phyllodes and longer pulvinus, and longer and thicker seeds, occurring in areas with an altitude above 300 m (subsp. montana D. Morrison & A.J. Rupp); a form with wider phyllodes, more flower heads per raceme, thicker seeds, and a small rootstock, restricted to the Grampians region (subsp. grampianensis D. Morrison & A.J. Rupp); and a form with shorter phyllodes, shorter internodes, shorter fruits, thicker seeds and a prostrate habit, occurring on windswept coastal headlands (subsp. prostrata D. Morrison & A.J. Rupp).


Phytotaxa ◽  
2014 ◽  
Vol 167 (1) ◽  
pp. 61
Author(s):  
PAMELA PUPPO

The morphological variation of the Calceolaria tripartita species complex was evaluated using Principal Components Analysis (PCA) of morphological characters. Fourteen quantitative characters were measured on more than 250 herbarium specimens. The results suggest the recognition of three entities based on floral characters, especially stamen morphology. The distinction between C. mandoniana, C. chelidonioides and C. tripartita s.s. is not supported. The morphological differences between the closely related C. tripartita s.s. and C. chelidonioides were also analyzed using two characters previously used to differentiate them. Finally, the morphological variation of C. tripartita s.s. throughout its geographical range and at an intra-population level was also surveyed. Even though this species is highly variable, no further subdivision is supported morphologically. A taxonomic synopsis and a key to species of the Calceolaria tripartita species complex are provided.


1971 ◽  
Vol 19 (4) ◽  
pp. 401 ◽  
Author(s):  
GF Watson ◽  
JJ Loftus-Hills ◽  
MJ Littlejohn

Populations of the L. ewingi complex in central and north-eastern Victoria are described as a new species (L. paraewingi) following a study of levels of reproductive isolation and morphological differentiation from other members of the complex. In the south the new species is broadly sympatric with L. verreauxi, but is contiguously allopatric with L. ewingi at the north-eastern and south-western borders of its distribution. Pre-mating isolating mechanisms between L, paraewingi and L. ewingi are not well developed; however, a high level of post-mating isolation exists between the two species. Morphological differences were found between L. paraewingi and populations of L. ewingi from southern Victoria and Tasmania, but populations in north-eastern Victoria are morphologically similar.


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