Pectobacterium parmentieri (black leg disease of potato).

Author(s):  
Ewa Lojkowska

Abstract Pectobacterium parmentieri is a bacterial pathogen of potato present in Europe since the 1960s. The bacterium was earlier classified as Pectobacterium carotovorum. After reclassification of P. carotovorum subsp. carotovorum SCC3193 to P. wasabiae and later on to P. parmentieri, several studies devoted to identification of pectinolytic bacteria in international collections and identification of the strains isolated from infected potato plants have indicated that this bacteria commonly occurs in several regions of Europe, Canada, USA, New Zealand and South Africa. P. parmentieri can cause symptoms of blackleg and soft rot on potato tubers. These diseases are usually a consequence of latent infection of seed potatoes. In the majority of countries pre-basic and basic seed tuber potatoes intended for the production of seed tuber crops should be free of Pectobacterium spp. and Dickeya spp. P. parmentieri is not present on any international or national alert lists.

2017 ◽  
Vol 107 (11) ◽  
pp. 1322-1330 ◽  
Author(s):  
Huan Jiang ◽  
Mengyi Jiang ◽  
Liuke Yang ◽  
Peiyan Yao ◽  
Lin Ma ◽  
...  

Pectobacterium carotovorum subsp. carotovorum strain PccS1, a bacterial pathogen causing soft rot disease of Zantedeschia elliotiana (colored calla), was investigated for virulence genes induced by the host plant. Using a promoter-trap transposon (mariner), we obtained 500 transposon mutants showing kanamycin resistance dependent on extract of Z. elliotiana. One of these mutants, PM86, exhibited attenuated virulence on both Z. elliotiana and Brassica rapa subsp. pekinensis. The growth of PM86 was also reduced in minimal medium (MM), and the reduction was restored by adding plant extract to the MM. The gene containing the insertion site was identified as rplY. The deletion mutant ΔrplY, exhibited reduced virulence, motility and plant cell wall-degrading enzyme production but not biofilm formation. Analysis of gene expression and reporter fusions revealed that the rplY gene in PccS1 is up-regulated at both the transcriptional and the translational levels in the presence of plant extract. Our results suggest that rplY is induced by Z. elliotiana extract and is crucial for virulence in P. carotovorum subsp. carotovorum.


2017 ◽  
Vol 52 (2) ◽  
pp. 135-140 ◽  
Author(s):  
MM Rahman ◽  
AA Khan ◽  
IH Mian ◽  
AM Akanda ◽  
MZ Alam

Bactericidal effect was investigated by chemicals against potato soft rot bacteria in vitro and in storage. The chemicals were acetic acid, boric acid, bleaching powder, lactic acid, calcium hydroxide, calcium chloride, potassium chloride and sodium hypo-chloride. Among eight  chemicals only three chemicals viz. acetic acid, boric acid and bleaching powder showed bactericidal activity against potato soft rot bacteria  Pectobacterium carotovorum subsp. carotovorum (E. carotovora subsp. carotovora) P-138 in vitro. Based on the results of in vitro experiment three chemicals, acetic acid, boric acid and bleaching powder were used to control soft rot disease of potato in storage. Fresh potato tubers were dipped in 0.2% solution/suspensions of acetic acid, boric acid and bleaching powder for 30 min. Then soft rot bacteria Pectobacterium carotovorum subsp. carotovorum P-138 was inoculated on potato. Finally potatoes were stored for 22 weeks in net bags in sterilized condition. All the three chemicals significantly decreased the infection rate, loss in weight and increased percentage of disease reduction (PDR) of potato. Boric acid was the most effective in controlling the soft rot disease of potato in storage followed by acetic acid and bleaching powder. So these chemicals may be used for seed purpose storage of potato tubers for year round storage at farmer’s level.Bangladesh J. Sci. Ind. Res. 52(2), 135-140, 2017


2018 ◽  
Vol 9 (1) ◽  
Author(s):  
M’hamed Benada ◽  
Boualem Boumaaza ◽  
Sofiane Boudalia ◽  
Omar Khaladi ◽  
Bettache Guessas

Soft rot symptoms were observed on potato plants in several potato cultivars in the western part of Algeria. A total of four strains of Erwinia are devided as follow: i) three strains of bacteria isolated from diseased tissues and soil, identified as Erwinia carotovora subsp carotovorum using conventional bacteriological and biochemical methods; and ii) one strain as Erwinia sp, not pathogens. In vitro tests, on tuber slices were set up to determine slices weight lost, which allows to find differences in cultivar susceptibility and isolate aggressiveness. Among the five cultivars, Laura was the most susceptible than the others tested cultivars. Moreover, it was found that MAI isolate was the most virulent than the other bacterial isolates. The results of this study should allow an optimization of the potato storage, after considering the susceptibility of a given cultivar to soft rot development and the aggressiveness.


Plant Disease ◽  
2022 ◽  
Author(s):  
Utpal Handique ◽  
Yaning Cao ◽  
Dekang Wang ◽  
Ruofang Zhang ◽  
Wensi Li ◽  
...  

Pectobacterium spp. and Dickeya spp. cause blackleg and soft rot on potato worldwide (Charkowski, 2018). Potato plants (cv. Favorita or Jizhang 8#) with blackleg symptoms (vascular browning of crown stems, Fig. S1) were observed in the field in Zhangjiakou, Hebei province in 2018, and in Ningde, Fujian Province in 2019, in China. The disease incidence was around 50% and 10% in Zhangjiakou (5 ha) and Ningde (4 ha), respectively. Diseased plants (3 from each site) were collected to isolate the pathogen. Blackleg symptomatic stems were soaked in 75% ethanol for 2 min, rinsed and ground in sterile distilled water. Serial tenfold dilutions of the above solution were plated onto the crystal violet pectate agar (CVP) plate (Ge et al., 2018). Two to 3 days after incubation at 28°C, 4 bacterial colonies in total which digested pectin from the media and developed pit on CVP plates were purified and sequenced for identification using the universal 16S rRNA gene primer set 27F/1492R (Monciardini et al., 2002). Two colony sequences that showed more than 99% sequence identity to Pectobacterium punjabense type strain SS95 (MH249622) were submitted to the GenBank ( accession numbers: OK510280, MT242589). Additionally, six housekeeping genes proA (OK546205, OK546199), gyrA (OK546206, OK546200), icdA (OK546207, OK546201), mdh (OK546208, OK546202), gapA (OK546209, OK546203), and rpoS (OK546210, OK546204) of these two isolates were amplified and sequenced (Ma et al., 2007, Waleron et al., 2008). All strains show 99% to 100% identity with MH249622T . Phylogenetic trees based on 16S rRNA gene sequences (Fig. S2) and concatenated sequences of the housekeeping genes (Fig. S3) of the 2 isolates were constructed using MEGA 6.0 software (Tamura et al., 2013). Koch’s postulate was performed on potato seedlings and potato tubers (cv. Favorita) by injecting 100 μl bacterial suspension (105 CFU/ml) or sterile phosphate-buffered solution into the crown area of the stems or the tubers and kept at 100% humidity and 21°C for 1 day. Four days after inoculation, the infected area of the inoculated seedlings rotten and turned black, while the controls were symptomless (Fig. S4). Two days after inoculation, the infected tubers rotten and turned black, while the controls were symptomless (Fig. S4). Bacterial colonies were reisolated from these symptomatic tissues and identified using the same methods described above. Blackleg on potato plants or soft rot on potato has been reported to be caused by Pectobacterium atrosepticum, Pectobacterium carotovorum subsp. carotovorum, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium parmentieri, Pectobacterium polaris in China (Zhao et al., 2018; Cao et al., 2021; Wang et al., 2021). To our knowledge, this is the first report of blackleg/soft rot of potato caused by Pectobacterium punjabense in China. We believe that this report will draw attention to the management of this pathogen in China.


2017 ◽  
Vol 75 (1) ◽  
pp. 97-104
Author(s):  
Renata Lebecka

Abstract Two diseases of the potato, blackleg of potato plants and soft rot of tubers, are caused by several species of pectinolytic bacteria which belong to two genera: Pectobacterium and Dickeya. Resistance to these bacteria is polygenic and the expression of resistance in tubers and plants is only partially related, as well as strongly dependent on the aggressiveness of the bacteria and on environmental factors. Two methods of assessing tuber and stem tissue resistance of potato cultivars and breeding lines are described.


2010 ◽  
Vol 23 (10) ◽  
pp. 1335-1344 ◽  
Author(s):  
Beth Mole ◽  
Sohrab Habibi ◽  
Jeffery L. Dangl ◽  
Sarah R. Grant

Pectobacterium carotovorum is a ubiquitous soft rot pathogen that uses global virulence regulators to coordinate pathogenesis in response to undefined environmental conditions. We characterize an operon in P. carotovorum required for gluconate metabolism and virulence. The operon contains four genes that are highly conserved among proteobacteria (initially annotated ygbJKLM), one of which was misassigned as a type III secreted effector, (ygbK, originally known as hopAN1). A mutant with a deletion-insertion within this operon is unable to metabolize gluconate, a precursor for the pentose phosphate pathway. The mutant exhibits attenuated growth on the leaves of its host of isolation, potato, and those of Arabidopsis thaliana. Notably, the mutant hypermacerates potato tubers and is deficient in motility. Global virulence regulators that are responsive to cell wall pectin breakdown products and other undefined environmental signals, KdgR and FlhD, respectively, are misregulated in the mutant. The alteration of virulence mediated via changes in transcription of known global virulence regulators in our ygbJ-M operon mutant suggests a role for host-derived catabolic intermediates in P. carotovorum pathogenesis. Thus, we rename this operon in P. carotovorum vguABCD for virulence and gluconate metabolism.


2017 ◽  
Vol 75 (1) ◽  
pp. 87-96
Author(s):  
Renata Lebecka

Abstract Blackleg of potato plants and soft rot of tubers are caused by several species of pectinolytic bacteria from genera Pectobacterium and Dickeya. The text describes simple methods of isolating bacteria from symptomatic and symptomless organs of potato plants, their identification using Polymerase Chain Reaction (PCR) and preservatio


Plant Disease ◽  
2014 ◽  
Vol 98 (5) ◽  
pp. 684-684 ◽  
Author(s):  
E. M. Onkendi ◽  
L. N. Maluleke ◽  
L. N. Moleleki

During the 2012/2013 growing season, potato tubers and stems showing rotting tissue and black discoloration, respectively, were obtained for analysis from Nyandarua and Mau Narok areas of Kenya, where potatoes are widely grown. During this period, more than 50% of the farms across Kenya reported cases of soft rot and blackleg diseases. Soft rot and blackleg diseases account for as much as 1/4 of the annual potato losses in Kenya. Bacteria from infected potato tuber and stem samples were isolated on nutrient agar then transferred to crystal violet polypectate medium (CVP) according to established standard procedures (3). All pit-forming (n = 48) strains were purified on nutrient agar and stored in 30% glycerol at –80°C for further use. All strains grew at 28°C and 37°C. PCR with pel gene specific primers (Y1/Y2) produced a 434-bp product and confirmed that all 48 strains have the gene sequence coding for pectate lyase specific for Pectobacterium spp. (1). Primers (Br1f/L1r) identified 1/3 of these strains as Pectobacterium carotovorum subsp. brasiliense based on their characteristic 322 bp (2). The other Pectobacterium spp. are currently undergoing further characterization. To further identify these pectolytic strains, a multi locus sequence typing (MLST) approach was employed (4). To this end, partial nucleotide sequences of the housekeeping genes mdh and gapA (accession nos. KF72004 to KF72009) showed 92% similarity to the Pcb1692 reference strain in GenBank. These results were in agreement with those obtained by species-specific primers. Phylogenetic analysis of the 679-bp concatenated partial gene sequences grouped strains collected in this study together with Pectobacterium subsp. brasiliense strains identified in other parts of the world with a 98% bootstrap support value. Three randomly selected Kenyan strains and Pcb1692 reference strain were inoculated into potato tubers in our research laboratory by making 1-cm holes into the tubers using a sterile pipette tip and thereafter injecting 10 μl (at 1.0 × 106 cfu/ml) into the tuber for pathogenicity assays. A negative control of 10 mM MgSO4 was included and all the inoculated holes sealed with petroleum jelly to avoid contamination. This experiment consisted of five potato tubers per strain in three independent assays. All three representative strains induced water soaked soft symptoms similar to the symptoms previously observed on infected potato tubers. Furthermore, when bacterial suspensions of 1.0 × 106 cfu/ml isolated strains and the Pcb1692 reference strain were inoculated onto potato stems maintained at 28°C, blackleg and wilting of the stems occurred within a period of 3 to 21 days. No symptoms were observed in potato tubers or stems inoculated with the negative control (MgSO4). PCR with Br1f/L1r primers confirmed that the re-isolated bacteria were P. carotovorum subsp. brasiliense. To our knowledge, this is the first occurrence of P. carotovorum subsp. brasiliense on potatoes in Kenya. References: (1) A. Darrasse et al. Appl. Environ. Microbiol. 60:1437, 1994. (2) V. Duarte et al. J. Appl. Microbiol. 96:535, 2004. (3) L. J. Hyman et al. Potato Res. 44:265, 2001. (4) Ma et al. Phytopathology 97:1150, 2007.


2021 ◽  
Vol 45 (1) ◽  
Author(s):  
Hassan Abd-El-Khair ◽  
Tarek G. Abdel-Gaied ◽  
Maurice S. Mikhail ◽  
Ahmed I. Abdel-Alim ◽  
Hamdy I. Seif El-Nasr

Abstract Background Several chemical bactericides were applied for controlling soft rot bacteria, Pectobacterium carotovorum subsp. carotovorum, which causes the destructive soft rot disease to many economically important vegetables, but because of their toxic hazards on human and environment became limit. The biocontrol was applied to control many plant pathogens. Therefore, this work is aimed to study the antagonistic activity of bacterial agents, i.e. Bacillus subtilis, Bacillus pumilus, Bacillus megaterium and Pseudomonas fluorescens, and fugal agents, i.e. Trichoderma harzianum, Trichoderma viride and Trichoderma virens, to control bacterial soft rot disease under in vitro and in vivo tests. Results The tested treatments could protect the potato tubers against the development of soft rot. T. viride and T. virens were highly effective in reducing soft rot symptoms on inoculated potato tuber slices, when applied at the same time or 2 h before pathogen inoculation, while B. megaterium and T. harzianum were highly effective when applied at the same time or 2 h after pathogen inoculation. In whole potato tubers technique, B.pumilus highly protected the stored potato tuber under artificially infection conditions, than P. fluorescens, T. harzianum, B. subtilis, T. viride, T. virens and B. megaterium, respectively. Conclusion Application of fungal agents or specify the bacterial species can play an important role in controlling bacterial soft rot disease in vegetables and increase the stored periods of potato tubers under storage conditions without any toxic effects.


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