Construction and spatio-temporal derivation of hazardous chemical leakage disaster chain

China is one of the countries most affected by typhoon disasters. It is of great significance to study the mechanism of typhoon disasters and construct a typhoon disaster chain for emergency management and disaster reduction. The evolution process of typhoon disaster based on expert knowledge and historical disaster data has been summarized in previous studies, which relied too much on artificial experience while less in-depth consideration was given to the disaster exposure, the social environment, as well as the spatio-temporal factors. Hence, problems, such as incomplete content and inconsistent expression of typhoon disaster knowledge, have arisen. With the development of computer technology, massive Web corpus with numerous Web news and various improvised content on the social media platform, and ontology that enables consistent expression new light has been shed on the knowledge discovery of typhoon disaster. With the Chinese Web corpus as its source, this research proposes a method to construct a typhoon disaster chain so as to obtain disaster information more efficiently, explore the spatio-temporal trends of disasters and their impact on human society, and then comprehensively comprehend the process of typhoon disaster. First, a quintuple structure (Concept, Property, Relationship, Rule and Instance) is used to design the Typhoon Disaster Chain Ontology Model (TDCOM) which contains the elements involved in a typhoon disaster. Then, the information extraction process, regarded as a sequence labeling task in the present study, is combined with the BERT model so as to extract typhoon event-elements from the customized corpus. Finally, taking Typhoon Mangkhut as an example, the typical typhoon disaster chain is constructed by data fusion and structured expression. The results show that the methods presented in this research can provide scientific support for analyzing the evolution process of typhoon disasters and their impact on human society.

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E3 ubiquitin ligases

Essays in Biochemistry ◽

10.1042/bse0410015 ◽

2005 ◽

Vol 41 ◽

pp. 15-30 ◽

Cited By ~ 123

Author(s):

Helen C. Ardley ◽

Philip A. Robinson

Keyword(s):

Protein Complexes ◽

Loss Of Function ◽

Direct Role ◽

Cellular Processes ◽

Substrate Protein ◽

Protein Ubiquitination ◽

C Terminus ◽

Full Complement ◽

Spatio Temporal ◽

Eukaryotic Organisms

The selectivity of the ubiquitin–26 S proteasome system (UPS) for a particular substrate protein relies on the interaction between a ubiquitin-conjugating enzyme (E2, of which a cell contains relatively few) and a ubiquitin–protein ligase (E3, of which there are possibly hundreds). Post-translational modifications of the protein substrate, such as phosphorylation or hydroxylation, are often required prior to its selection. In this way, the precise spatio-temporal targeting and degradation of a given substrate can be achieved. The E3s are a large, diverse group of proteins, characterized by one of several defining motifs. These include a HECT (homologous to E6-associated protein C-terminus), RING (really interesting new gene) or U-box (a modified RING motif without the full complement of Zn2+-binding ligands) domain. Whereas HECT E3s have a direct role in catalysis during ubiquitination, RING and U-box E3s facilitate protein ubiquitination. These latter two E3 types act as adaptor-like molecules. They bring an E2 and a substrate into sufficiently close proximity to promote the substrate's ubiquitination. Although many RING-type E3s, such as MDM2 (murine double minute clone 2 oncoprotein) and c-Cbl, can apparently act alone, others are found as components of much larger multi-protein complexes, such as the anaphase-promoting complex. Taken together, these multifaceted properties and interactions enable E3s to provide a powerful, and specific, mechanism for protein clearance within all cells of eukaryotic organisms. The importance of E3s is highlighted by the number of normal cellular processes they regulate, and the number of diseases associated with their loss of function or inappropriate targeting.

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Elucidating cyclic AMP signaling in subcellular domains with optogenetic tools and fluorescent biosensors

Biochemical Society Transactions ◽

10.1042/bst20190246 ◽

2019 ◽

Vol 47 (6) ◽

pp. 1733-1747 ◽

Cited By ~ 3

Author(s):

Christina Klausen ◽

Fabian Kaiser ◽

Birthe Stüven ◽

Jan N. Hansen ◽

Dagmar Wachten

Keyword(s):

Cyclic Amp ◽

Adenosine Monophosphate ◽

Adenylyl Cyclases ◽

Temporal Precision ◽

Fluorescent Biosensors ◽

Subcellular Domains ◽

Spatio Temporal ◽

Hydrolysis Of ◽

Shed Light ◽

Cyclic Amp Signaling

The second messenger 3′,5′-cyclic nucleoside adenosine monophosphate (cAMP) plays a key role in signal transduction across prokaryotes and eukaryotes. Cyclic AMP signaling is compartmentalized into microdomains to fulfil specific functions. To define the function of cAMP within these microdomains, signaling needs to be analyzed with spatio-temporal precision. To this end, optogenetic approaches and genetically encoded fluorescent biosensors are particularly well suited. Synthesis and hydrolysis of cAMP can be directly manipulated by photoactivated adenylyl cyclases (PACs) and light-regulated phosphodiesterases (PDEs), respectively. In addition, many biosensors have been designed to spatially and temporarily resolve cAMP dynamics in the cell. This review provides an overview about optogenetic tools and biosensors to shed light on the subcellular organization of cAMP signaling.

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