scholarly journals A NIMA-related Kinase, Fa2p, Localizes to a Novel Site in the Proximal Cilia of Chlamydomonas and Mouse Kidney Cells

2004 ◽  
Vol 15 (11) ◽  
pp. 5172-5186 ◽  
Author(s):  
Moe R. Mahjoub ◽  
M. Qasim Rasi ◽  
Lynne M. Quarmby

Polycystic kidney disease and related syndromes involve dysregulation of cell proliferation in conjunction with ciliary defects. The relationship between cilia and cell cycle is enigmatic, but it may involve regulation by the NIMA-family of kinases (Neks). We previously showed that the Nek Fa2p is important for ciliary function and cell cycle in Chlamydomonas. We now show that Fa2p localizes to an important regulatory site at the proximal end of cilia in both Chlamydomonas and a mouse kidney cell line. Fa2p also is associated with the proximal end of centrioles. Its localization is dynamic during the cell cycle, following a similar pattern in both cell types. The cell cycle function of Fa2p is kinase independent, whereas its ciliary function is kinase dependent. Mice with mutations in Nek1 or Nek8 have cystic kidneys; therefore, our discovery that a member of this phylogenetic group of Nek proteins is localized to the same sites in Chlamydomonas and kidney epithelial cells suggests that Neks play conserved roles in the coordination of cilia and cell cycle progression.

2000 ◽  
Vol 68 (8) ◽  
pp. 4531-4538 ◽  
Author(s):  
Brenda A. Wilson ◽  
Lyaylya R. Aminova ◽  
Virgilio G. Ponferrada ◽  
Mengfei Ho

ABSTRACT The intracellularly acting protein toxin of Pasteurella multocida (PMT) causes numerous effects in cells, including activation of inositol 1,4,5-trisphosphate (IP3) signaling, Ca2+ mobilization, protein phosphorylation, morphological changes, and DNA synthesis. The direct intracellular target of PMT responsible for activation of the IP3 pathway is the Gq/11α-protein, which stimulates phospholipase C (PLC) β1. The relationship between PMT-mediated activation of the Gq/11-PLC-IP3pathway and its ability to promote mitogenesis and cellular proliferation is not clear. PMT stimulation of p42/p44 mitogen-activated protein kinase occurs upstream via Gq/11-dependent transactivation of the epidermal growth factor receptor. We have further characterized the effects of PMT on the downstream mitogenic response and cell cycle progression in Swiss 3T3 and Vero cells. PMT treatment caused dramatic morphological changes in both cell lines. In Vero cells, limited multinucleation, nuclear fragmentation, and disruption of cytokinesis were also observed; however, a strong mitogenic response occurred only with Swiss 3T3 cells. Significantly, this mitogenic response was not sustained. Cell cycle analysis revealed that after the initial mitogenic response to PMT, both cell types subsequently arrested primarily in G1and became unresponsive to further PMT treatment. In Swiss 3T3 cells, PMT induced up-regulation of c-Myc; cyclins D1, D2, D3, and E; p21; PCNA; and the Rb proteins, p107 and p130. In Vero cells, PMT failed to up-regulate PCNA and cyclins D3 and E. We also found that the initial PMT-mediated up-regulation of several of these signaling proteins was not sustained, supporting the subsequent cell cycle arrest. The consequences of PMT entry thus depend on the differential regulation of signaling pathways within different cell types.


2002 ◽  
Vol 76 (24) ◽  
pp. 12543-12552 ◽  
Author(s):  
Amy Mauser ◽  
Elizabeth Holley-Guthrie ◽  
Adam Zanation ◽  
Wendall Yarborough ◽  
William Kaufmann ◽  
...  

ABSTRACT The Epstein-Barr virus (EBV) immediate-early protein BZLF1 mediates the switch between the latent and lytic forms of EBV infection and has been previously shown to induce a G1/S block in cell cycle progression in some cell types. To examine the effect of BZLF1 on cellular gene expression, we performed microarray analysis on telomerase-immortalized human keratinocytes that were mock infected or infected with a control adenovirus vector (AdLacZ) or a vector expressing the EBV BZLF1 protein (AdBZLF1). Cellular genes activated by BZLF1 expression included E2F-1, cyclin E, Cdc25A, and a number of other genes involved in cell cycle progression. Immunoblot analysis confirmed that BZLF1 induced expression of E2F-1, cyclin E, Cdc25A, and stem loop binding protein (a protein known to be primarily expressed during S phase) in telomerase-immortalized keratinocytes. Similarly, BZLF1 increased expression of E2F-1, cyclin E, and stem loop binding protein (SLBP) in primary tonsil keratinocytes. In contrast, BZLF1 did not induce E2F-1 expression in normal human fibroblasts. Cell cycle analysis revealed that while BZLF1 dramatically blocked G1/S progression in normal human fibroblasts, it did not significantly affect cell cycle progression in primary human tonsil keratinocytes. Furthermore, in EBV-infected gastric carcinoma cells, the BZLF1-positive cells had an increased number of cells in S phase compared to the BZLF1-negative cells. Thus, in certain cell types (but not others), BZLF1 enhances expression of cellular proteins associated with cell cycle progression, which suggests that an S-phase-like environment may be advantageous for efficient lytic EBV replication in some cell types.


2019 ◽  
Author(s):  
Chiaowen Joyce Hsiao ◽  
PoYuan Tung ◽  
John D. Blischak ◽  
Jonathan E. Burnett ◽  
Kenneth A. Barr ◽  
...  

AbstractCellular heterogeneity in gene expression is driven by cellular processes such as cell cycle and cell-type identity, and cellular environment such as spatial location. The cell cycle, in particular, is thought to be a key driver of cell-to-cell heterogeneity in gene expression, even in otherwise homogeneous cell populations. Recent advances in single-cell RNA-sequencing (scRNA-seq) facilitate detailed characterization of gene expression heterogeneity, and can thus shed new light on the processes driving heterogeneity. Here, we combined fluorescence imaging with scRNA-seq to measure cell cycle phase and gene expression levels in human induced pluripotent stem cells (iPSCs). Using these data, we developed a novel approach to characterize cell cycle progression. While standard methods assign cells to discrete cell cycle stages, our method goes beyond this, and quantifies cell cycle progression on a continuum. We found that, on average, scRNA-seq data from only five genes predicted a cell’s position on the cell cycle continuum to within 14% of the entire cycle, and that using more genes did not improve this accuracy. Our data and predictor of cell cycle phase can directly help future studies to account for cell-cycle-related heterogeneity in iPSCs. Our results and methods also provide a foundation for future work to characterize the effects of the cell cycle on expression heterogeneity in other cell types.


2021 ◽  
Vol 220 (5) ◽  
Author(s):  
Catarina Nabais ◽  
Delphine Pessoa ◽  
Jorge de-Carvalho ◽  
Thomas van Zanten ◽  
Paulo Duarte ◽  
...  

Centrioles form centrosomes and cilia. In most proliferating cells, centrioles assemble through canonical duplication, which is spatially, temporally, and numerically regulated by the cell cycle and the presence of mature centrioles. However, in certain cell types, centrioles assemble de novo, yet by poorly understood mechanisms. Herein, we established a controlled system to investigate de novo centriole biogenesis, using Drosophila melanogaster egg explants overexpressing Polo-like kinase 4 (Plk4), a trigger for centriole biogenesis. We show that at a high Plk4 concentration, centrioles form de novo, mature, and duplicate, independently of cell cycle progression and of the presence of other centrioles. Plk4 concentration determines the temporal onset of centriole assembly. Moreover, our results suggest that distinct biochemical kinetics regulate de novo and canonical biogenesis. Finally, we investigated which other factors modulate de novo centriole assembly and found that proteins of the pericentriolar material (PCM), and in particular γ-tubulin, promote biogenesis, likely by locally concentrating critical components.


Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 700-700
Author(s):  
Michihiro Kobayashi ◽  
Edward F. Srour

Abstract Abstract 700 Cell cycle status of hematopoietic stem cells (HSC) is tightly regulated most likely to balance quiescence and proliferation/differentiation of these cells which fulfil the immediate and continuous demands for maintenance of the size of the stem cell pool as well as the production of all the formed elements of the blood, respectively. Tumor suppressor genes, which negatively influence cell cycle regulation and control cell survival have different important roles in HSC function. Recently, Dmtf1 (Cyclin D-binding Myb-like Transcription Factor 1) was recognized as a tumor suppressor gene that is deleted in lung cancer and leukemic cells. Dmtf1 has been shown to regulate cell cycle progression by mainly an Arf-Mdm2-p53 dependent mechanism. Since the role of Dmtf1 in the hematopoietic system has not been explored, we investigated weather Dmtf1 plays a role in regulating HSC quiescence by analyzing Dmtf1 KO mice. Dmtf1 was expressed in many stages and lineages of hematopoietic cells, including Kit+Sca-1+Lineage- (KSL) cells, Kit+/lin- cells, T-cells, B-cells, and granulocytes. As previously reported, KO mice were smaller than WT mice (25.1 vs 28.0 g at 13-14 weeks old male, p<0.01), however, bone marrow (BM) of KO mice contained a higher number of total nucleated cells than that of WT mice (6.8 vs 5.1 × 10e7 in 2 femurs, p<0.01). Population of myeloid and T/B-cell were similar in both genotype. Absolute KSL count in KO BM was more than 2-fold higher than that of WT marrow (6.1 vs 2.2 × 10e4/femur, p<0.03). Although the frequency of ST-HSC (CD34+CD135+ KSL) was higher in KO mice (0.17 vs 0.09%, p<0.05), the frequency of LT-HSC (CD34-CD135- KSL) was similar in both genotypes (0.03 vs 0.03%). Sorted KSL from KO mice contained higher numbers of clonogenic cells (62.3 vs 32.3 CFU/1000KSL, p<0.01) and exhibited a higher proliferative potential in liquid culture. Competitively transplanted low-density BM cells from KO mice sustained a higher level of chimerism in recipient mice than their WT counterparts at 16 weeks post-transplantation (83 vs 48%, p<0.05). To evaluate differences in the repopulation potential of LT-HSC, we transplanted 100 sorted CD34-CD135- KSL (CD45.2) with 5×10e5 competitor BM low-density cells (CD45.1). KO LT-HSC supported markedly higher chimerism than WT cells at 16 weeks (45.6 vs 3.8%, p<0.01). Results of secondary transplantation are pending. Because it has been shown that Dmtf1 is induced by oncogenic or proliferative RAS/ERK signals as an initiation of negative feed back regulation, we investigated the relationship between Dmtf1 expression and cell cycle status of KSL cells in the early phases of proliferation. At steady state (0 hr), sorted KO-KSL showed a higher percentage of cycling cells (S+G2/M) by Hst/Pyronin staining (16.8 vs 11.2%) and the same percentage of G0 cells (51.2 vs 52.6%). Percentage of cycling KO- & WT-KSL cells after 24hr in culture was 37.8% and 24.2%, respectively, and at 48hr, the fraction of KO-KSL in G0 was lower than that among WT cells (1.6 vs 7.8%). Apoptosis was not increased among KO BM cells. Accordingly, expression of Dmtf1 was increased at 24 & 48 hr compared to 0 hr by real-time qPCR analysis. Interestingly, a marked suppression of CDKN1a (p21) expression in KO-KSL cells was observed at both 0 and 48hr. Given that Arf expression is induced by Dmtf1 in epithelial cells, we examined the relationship between Arf and Dmtf1 in KSL cells. Arf was not detected at 0hr in WT and KO KSL cells. While cultured KO-KSL cells failed to express Arf after 48 & 72hr in culture, WT cells expressed Arf after 72hr suggesting that induction of Arf may be partially responsible for the dysregulation of cell cycle progression in cultured KO-KSL cells and Arf does not have important role for regulating the cell cycle of steady state HSCs. Taken together, our data suggest that loss of Dmtf1 make LT-HSC acquire a higher long-term repopulating potential compared to WT cells and that in the hematopoietic system that might be involved in development of leukemic stem cell. Dmtf1 regulates HSC quiescence by the induction of CDKN1a via an Arf independent mechanism. Disclosures: No relevant conflicts of interest to declare.


2021 ◽  
Vol 12 ◽  
Author(s):  
Jiangguo Zhang ◽  
Zhimo Wang ◽  
Hong Lv ◽  
Guojun Li

Objective: Recent investigations revealed the relationship between Fusobacterium nucleatum (Fn) infection and colorectal cancer (CRC). However, how the host genes changes contribute to CRC in response to Fn infection remains largely unknown.Materials and methods: In the present study, we aimed to comprehensively analyze microarray data obtained from a Caco-2 infection cell model using integrated bioinformatics analysis and further identify and validate potential candidate genes in Fn-infected Caco-2 cells and CRC specimens.Results: We identified 10 hub genes potentially involved in Fn induced tumor initiation and progression. Furthermore, we demonstrated that the expression of centrosomal protein of 55 kDa (CEP55) is significantly higher in Fn-infected Caco-2 cells. Knocking down of CEP55 could arrest the cell cycle progression and induce apoptosis in Fn-infected Caco-2 cells. The expression of CEP55 was positively correlated with the Fn amount in Fn-infected CRC patients, and these patients with high CEP55expression had an obviously poorer differentiation, worse metastasis and decreased cumulative survival rate.Conclusion: CEP55 plays an important role in Fn-infected colon cancer cell growth and cell cycle progression and could be used as a new diagnostic and prognostic biomarker for Fn-infected CRC.


2020 ◽  
Author(s):  
Catarina Nabais ◽  
Delphine Pessoa ◽  
Jorge de-Carvalho ◽  
Thomas van Zanten ◽  
Paulo Duarte ◽  
...  

AbstractCentrioles form centrosomes and cilia. In most proliferating cells, centrioles assemble through canonical duplication, which is spatially, temporally and numerically regulated by the cell cycle and the presence of mature centrioles. However, in certain cell-types, centrioles assemble de novo, yet by poorly understood mechanisms. Here, we established a controlled system to investigate de novo centriole biogenesis, using Drosophila melanogaster egg explants overexpressing Polo-like kinase 4 (Plk4), a trigger for centriole biogenesis. We show that at high Plk4 concentration, centrioles form de novo, mature and duplicate, independently of cell cycle progression and of the presence of other centrioles. Plk4 concentration determines the kinetics of centriole assembly. Moreover, our results suggest Plk4 operates in a switch-like manner to control the onset of de novo centriole formation, and that distinct biochemical kinetics regulate de novo and canonical biogenesis. Finally, we investigated which other factors modulate de novo centriole assembly and reveal that proteins of the pericentriolar matrix (PCM) promote biogenesis, likely by locally concentrating critical components.


2017 ◽  
Author(s):  
Xiaoming Sun ◽  
Aizhan Bizhanova ◽  
Timothy D. Matheson ◽  
Jun Yu ◽  
Lihua Julie Zhu ◽  
...  

AbstractKi-67 protein is widely used as a tumor proliferation marker. However, whether Ki-67 affects cell cycle progression has been controversial. Here, we demonstrate that depletion of Ki-67 in human hTERT-RPE1, WI-38, IMR90, hTERT-BJ cell lines and primary fibroblast cells slowed entry into S phase and coordinately downregulated genes related to DNA replication. Some gene expression changes were partially relieved in Ki-67-depleted hTERT-RPE1 cells by co-depletion of the Rb checkpoint protein, but more thorough suppression of the transcriptional and cell cycle defects was observed upon depletion of cell cycle inhibitor p21. Notably, induction of p21 upon depletion of Ki-67 was a consistent hallmark of cell types in which transcription and cell cycle distribution were sensitive to Ki-67; these responses were absent in cells that did not induce p21. Furthermore, upon Ki-67 depletion, a subset of inactive × (Xi) chromosomes in female hTERT-RPE1 cells displayed several features of compromised heterochromatin maintenance, including decreased H3K27me3 and H4K20me1 labeling. These chromatin alterations were limited to Xi chromosomes localized away from the nuclear lamina and were not observed in checkpoint-deficient 293T cells. Altogether, our results indicate that Ki-67 integrates normal S phase progression and Xi heterochromatin maintenance in p21 checkpoint-proficient human cells.


2017 ◽  
Vol 37 (17) ◽  
Author(s):  
Xiaoming Sun ◽  
Aizhan Bizhanova ◽  
Timothy D. Matheson ◽  
Jun Yu ◽  
Lihua Julie Zhu ◽  
...  

ABSTRACT The Ki-67 protein is widely used as a tumor proliferation marker. However, whether Ki-67 affects cell cycle progression has been controversial. Here we demonstrate that depletion of Ki-67 in human hTERT-RPE1, WI-38, IMR90, and hTERT-BJ cell lines and primary fibroblast cells slowed entry into S phase and coordinately downregulated genes related to DNA replication. Some gene expression changes were partially relieved in Ki-67-depleted hTERT-RPE1 cells by codepletion of the Rb checkpoint protein, but more thorough suppression of the transcriptional and cell cycle defects was observed upon depletion of the cell cycle inhibitor p21. Notably, induction of p21 upon depletion of Ki-67 was a consistent hallmark of cell types in which transcription and cell cycle distribution were sensitive to Ki-67; these responses were absent in cells that did not induce p21. Furthermore, upon Ki-67 depletion, a subset of inactive X (Xi) chromosomes in female hTERT-RPE1 cells displayed several features of compromised heterochromatin maintenance, including decreased H3K27me3 and H4K20me1 labeling. These chromatin alterations were limited to Xi chromosomes localized away from the nuclear lamina and were not observed in checkpoint-deficient 293T cells. Altogether, our results indicate that Ki-67 integrates normal S-phase progression and Xi heterochromatin maintenance in p21 checkpoint-proficient human cells.


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