Microfluidic devices for embryonic and larval zebrafish studies

2019 ◽  
Vol 18 (6) ◽  
pp. 419-432 ◽  
Author(s):  
Arezoo Khalili ◽  
Pouya Rezai

Abstract Zebrafish or Danio rerio is an established model organism for studying the genetic, neuronal and behavioral bases of diseases and for toxicology and drug screening. The embryonic and larval stages of zebrafish have been used extensively in fundamental and applied research due to advantages offered such as body transparency, small size, low cost of cultivation and high genetic homology with humans. However, the manual experimental methods used for handling and investigating this organism are limited due to their low throughput, labor intensiveness and inaccuracy in delivering external stimuli to the zebrafish while quantifying various neuronal and behavioral responses. Microfluidic and lab-on-a-chip devices have emerged as ideal technologies to overcome these challenges. In this review paper, the current microfluidic approaches for investigation of behavior and neurobiology of zebrafish at embryonic and larval stages will be reviewed. Our focus will be to provide an overview of the microfluidic methods used to manipulate (deliver and orient), immobilize and expose or inject zebrafish embryos or larvae, followed by quantification of their responses in terms of neuron activities and movement. We will also provide our opinion in terms of the direction that the field of zebrafish microfluidics is heading toward in the area of biomedical engineering.

2016 ◽  
Vol 15 (10) ◽  
pp. 2171-2179 ◽  
Author(s):  
Jin-Song Zhang ◽  
Yi Huang ◽  
Xiao-Bo Han ◽  
Ting-Lin Huang ◽  
Alice K. Y. Chan

2009 ◽  
Vol 297 (2) ◽  
pp. R412-R420 ◽  
Author(s):  
Shelby L. Steele ◽  
Kwok Hong Andy Lo ◽  
Vincent Wai Tsun Li ◽  
Shuk Han Cheng ◽  
Marc Ekker ◽  
...  

Fish exposed to hypoxia develop decreased heart rate, or bradycardia, the physiological significance of which remains unknown. The general muscarinic receptor antagonist atropine abolishes the development of this hypoxic bradycardia, suggesting the involvement of muscarinic receptors. In this study, we tested the hypothesis that the hypoxic bradycardia is mediated specifically by stimulation of the M2 muscarinic receptor, the most abundant subtype in the vertebrate heart. Zebrafish ( Danio rerio) were reared at two levels of hypoxia (30 and 40 Torr Po2) from the point of fertilization. In hypoxic fish, the heart rate was significantly lower than in normoxic controls from 2 to 10 days postfertilization (dpf). At the more severe level of hypoxia (30 Torr Po2), there were significant increases in the relative mRNA expression of M 2 and the cardiac type β-adrenergic receptors ( β1AR, β2aAR, and β2bAR) at 4 dpf. The hypoxic bradycardia was abolished (at 40 Torr Po2) or significantly attenuated (at 30 Torr Po2) in larvae experiencing M2 receptor knockdown (using morpholino antisense oligonucleotides). Sham-injected larvae exhibited typical hypoxic bradycardia in both hypoxic regimens. The expression of β1AR, β2aAR, β2bAR, and M 2 mRNA was altered at various stages between 1 and 4 dpf in larvae experiencing M2 receptor knockdown. Interestingly, M2 receptor knockdown revealed a cardioinhibitory role for the β2-adrenergic receptor. This is the first study to demonstrate a specific role of the M2 muscarinic receptor in the initiation of hypoxic bradycardia in fish.


2021 ◽  
Vol 759 ◽  
pp. 143456
Author(s):  
Vítor Otacílio de Almeida ◽  
Talita Carneiro Brandão Pereira ◽  
Lilian de Souza Teodoro ◽  
Manuella Escobar ◽  
Carolina Junqueira Ordovás ◽  
...  

Biosensors ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 257
Author(s):  
Sebastian Fudickar ◽  
Eike Jannik Nustede ◽  
Eike Dreyer ◽  
Julia Bornhorst

Caenorhabditis elegans (C. elegans) is an important model organism for studying molecular genetics, developmental biology, neuroscience, and cell biology. Advantages of the model organism include its rapid development and aging, easy cultivation, and genetic tractability. C. elegans has been proven to be a well-suited model to study toxicity with identified toxic compounds closely matching those observed in mammals. For phenotypic screening, especially the worm number and the locomotion are of central importance. Traditional methods such as human counting or analyzing high-resolution microscope images are time-consuming and rather low throughput. The article explores the feasibility of low-cost, low-resolution do-it-yourself microscopes for image acquisition and automated evaluation by deep learning methods to reduce cost and allow high-throughput screening strategies. An image acquisition system is proposed within these constraints and used to create a large data-set of whole Petri dishes containing C. elegans. By utilizing the object detection framework Mask R-CNN, the nematodes are located, classified, and their contours predicted. The system has a precision of 0.96 and a recall of 0.956, resulting in an F1-Score of 0.958. Considering only correctly located C. elegans with an [email protected] IoU, the system achieved an average precision of 0.902 and a corresponding F1 Score of 0.906.


2018 ◽  
Vol 26 (5) ◽  
pp. 4913-4923 ◽  
Author(s):  
Fangjie Cao ◽  
Christopher L. Souders ◽  
Pengfei Li ◽  
Sen Pang ◽  
Lihong Qiu ◽  
...  

2020 ◽  
Vol 31 (3) ◽  
pp. 91-107 ◽  
Author(s):  
Najihah Azman ◽  
Nur Ain Izzati Mohd Zainudin ◽  
Wan Norhamidah Wan Ibrahim

Fumonisin B1 (FB1) is a common mycotoxin produced by Fusarium species particularly F. proliferatum and F. verticillioides. The toxin produced can cause adverse effects on humans and animals. The objectives of this study were to detect the production of FB1 based on the amplification of FUM1 gene, to quantify FB1 produced by the isolates using Ultra-fast Liquid Chromatography (UFLC) analysis, to examine the embryotoxicity effect of FB1 and to determine EC50 toward the larvae of zebrafish (Danio rerio). Fifty isolates of Fusarium species were isolated from different hosts throughout Malaysia. Successful amplification of the FUM1 gene showed the presence of this gene (800 bp) in the genome of 48 out of 50 isolates. The highest level of FB1 produced by F. proliferatum isolate B2433 was 6677.32 ppm meanwhile F. verticillioides isolate J1363 was 954.01 ppm. From the assessment of embryotoxicity test of FB1 on larvae of zebrafish, five concentrations of FB1 (0.43 ppm, 0.58 ppm, 0.72 ppm, 0.87 ppm and 1.00 ppm) were tested. Morphological changes of the FB1 exposed-larvae were observed at 24 to 168 hpf. The mortality rate and abnormality of zebrafish larvae were significantly increased at 144 hpf exposure. Meanwhile, the spontaneous tail coiling showed a significant difference. There were no significant differences in the heartbeat rate. As a conclusion, the presence of FUM1 in every isolate can be detected by FUM1 gene analysis and both of the species produced different concentrations of FB1. This is the first report of FB1 produced by Fusarium species gave a significant effect on zebrafish development.


Coatings ◽  
2021 ◽  
Vol 11 (11) ◽  
pp. 1423
Author(s):  
Nor Izaida Ibrahim ◽  
Farah Syazwani Shahar ◽  
Mohamed Thariq Hameed Sultan ◽  
Ain Umaira Md Shah ◽  
Syafiqah Nur Azrie Safri ◽  
...  

Each year, more than 330 million tons of plastic are produced worldwide. The main consumers of plastics are the packaging (40%), building (20%) and automotive (8%) industries, as well as for the manufacture of household appliances. The vast majority of industrial plastics are not biodegradable and, therefore, create environmental problems due to the increase in the amount of solid waste. Studies have been conducted to produce biodegradable materials such as bioplastics to overcome this environmental problem. Bioplastics are defined as materials that are bio-based, biodegradable, or both; they can provide excellent biodegradability and can be used to help alleviate environmental problems. Therefore, this article presents an overview of the introduction of bioplastic materials and classifications, and a comprehensive review of their drawbacks and areas of importance, including basic and applied research, as well as biopolymer mixtures and biocomposites developed in the last decade. At the same time, this article provides insights into the development of bioplastics research to meet the needs of many industries, especially in the packaging industry in Malaysia. This review paper also focuses generally on bioplastic packaging applications such as food and beverage, healthcare, cosmetics, etc.


Chemosphere ◽  
2017 ◽  
Vol 166 ◽  
pp. 63-71 ◽  
Author(s):  
Dongmei Guo ◽  
Yanhua Wang ◽  
Yongzhong Qian ◽  
Chen Chen ◽  
Bining Jiao ◽  
...  
Keyword(s):  

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