scholarly journals Geographical Distribution, Biodiversity, and Species Richness of Medically Important Necrophagous Flies in Central Iran

2019 ◽  
Vol 57 (2) ◽  
pp. 377-381
Author(s):  
Ehssan Mozaffari ◽  
Abedin Saghafipour ◽  
Kourosh Arzamani ◽  
Nahid Jesri ◽  
Majid Kababian ◽  
...  
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Similarity Index ◽  
Wiener Index ◽  
Diversity Indices ◽  
Central Iran ◽  
Calliphora Vicina ◽  
Mountainous Areas ◽  
Cross Sectional ◽  
Important Species

Abstract There have been some investigations carried out about necrophagous flies and their biodiversity indices in Iran. In the present study, the species composition of flies, their richness, and biodiversity were investigated in central Iran. In a cross-sectional study, specimens were collected monthly in three different climate areas of Qom Province. Species diversity, species richness, and species evenness were calculated to estimate the species biodiversity of flies. In total, 7,291 flies were collected and identified using valid identification keys that classified flies into four families and 15 different species. The largest collection of flies was obtained in the mountainous areas comprising 36.2% of specimens. Moreover, five forensically important species of fly were collected in this region with the potential to cause human and animal myiasis: Calliphora vicina, Lucilia sericata, Musca domestica, Wohlfahrtia nuba, and Chrysomya albiceps. There were slight differences in species richness and diversity indices in the areas. In mountainous areas, the Shannon–Wiener index and richness were maximum (H’ = 1.87, S = 13). The evenness based on the Shannon evenness index in the mountainous areas was 0.728 and 0.719 in desert areas, whereas it was the highest (0.764) in the semidesert areas. Moreover, high values of the Jaccard similarity index were observed in captured necrophagous fly species in all the areas. The necrophagous fly fauna and species diversity indices were high because of an increase in the evenness. In general, some well-known forensically important species of flies were collected that proved the potential of myiasis occurrence in this area.

scholarly journals Keanekaragaman dan Kelimpahan Belalang dan Kerabatnya (Orthoptera) pada Dua Ekosistem Pegunungan di Taman Nasional Gunung Halimun-Salak

2015 ◽  
Vol 7 (2) ◽  
pp. 100
Author(s):  
NETY VIRGO ERAWATI ◽  
SIH KAHONO
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
National Park ◽  
Diversity Index ◽  
Sampling Site ◽  
Similarity Index ◽  
Line Transect ◽  
Light Traps ◽  
Set Up ◽  
Sweep Net

A study on diversity and abundance of grasshopper and its relatives (Orthoptera) was conducted at two mountainous rainforest ecosystems (Mounts Kendeng and Botol) of Gunung Halimun-Salak National Park. A hundred meters of a line transect was used to sample and set up several insect traps (yellow pan, malaise, pit fall, bait pit fall, sweep net, and light traps), and insect sweepings as well. The light traps were set up at about fifty meters distance from the end of the sampling sites. A total individual collected by traps was combined on every comparable sampling site. Total individuals of the Orthoptera captured were 414; consisted of 25 species of 9 families. Both species diversity and number of families were higher at Mount Kendeng rather than Mount Botol. Number of species of each family usually similar except on family of Grillidae was much higher at Mount Kendeng. Species belong to Phasmidae was not recorded at Mount Kendeng, while species belong to both families of Gryllotalpidae and Tettigonidae were not captured at Mount Botol as well. Overal there was a difference in the species richness at each between. Shannon Diversity Index (H’) and evenness (E) were higher at Mount Kendeng (2.44 and 0.81) rather than Mount Botol (1.80 and 0.66). Similarity Index of Jaccard (Cj) and Sorenson (Cn) of both localities were similar (0.40 and 0.32). Herbivores were most dominant at both localities (Phasmidae, Tetrigidae, Acrididae, Gryllidae, dan Gryllotalpidae), followed by omnivores (Blattidae), scavenger (Gryllacrididae), and predator (Mantidae).

scholarly journals Microbial Diversity Based on Multifractal Analysis of Metagenomes

2021 ◽  
Author(s):  
Xianhua Xie ◽  
Yuanlin Ma ◽  
Zuguo Yu ◽  
Guosheng Han
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Multifractal Analysis ◽  
Pearson Correlation ◽  
Correlation Coefficients ◽  
Diversity Indices ◽  
Age Difference ◽  
Chaos Game Representation ◽  
As Species ◽  
Species Diversity Indices

Species diversity in microbiome is a cutting-edge concept in metagenomic research. In this study, we propose a multifractal analysis for metagenomic research. From the chaos game representation (CGR) visualization of simulated and real metagenomes, we find that there exists self-similarity in the visualization of metagenomes. Then we compute the multifractal dimensions for simulated and real metagenomes. For simulated metagenomes, we also compute their diversity indices, such as species richness indices, Shannon’s diversity indices and Simpson’s diversity indices respectively for varying value of . Fom the Pearson correlation coefficients between their multifractal dimensions and traditional species diversity indices, we find that the correlation coefficients between the multifractal dimensions and species richness indices and Shannon diversity indices reach their maximums at respectively. The correlation coefficients between the multifractal dimensions and Simpson’s diversity indices reach their maximums at nearly. So the traditional diversity indices can be unified by the frame of multifractal analysis. These results coincided with the similar results in macrobial ecology. Finally, we apply our methods to real metagenomes of 100 infants’ gut microbiomes when they are newborn, 4 months and 12 months. Our results show that multifractal dimensions of infants’ gut microbiomes can discriminate the age difference.

The importance and use of taxon sampling curves for comparative biodiversity research with forest arthropod assemblages

2005 ◽  
Vol 137 (1) ◽  
pp. 120-127 ◽  
Author(s):  
Christopher M. Buddle ◽  
Julien Beguin ◽  
Elise Bolduc ◽  
Alida Mercado ◽  
Tara E. Sackett ◽  
...  
Keyword(s):  
Species Richness ◽  
Alpha Diversity ◽  
Wiener Index ◽  
Diversity Indices ◽  
Taxon Sampling ◽  
Sampling Effort ◽  
Single Index ◽  
Arthropod Biodiversity ◽  
Forested Ecosystems ◽  
Number Of Individuals

AbstractFor over three decades, the importance of taxon sampling curves for comparative biodiversity studies has been repeatedly stated. However, many entomologists (both within Canada and worldwide) continue to publish studies without standardizing their data to take sampling effort into account. We present a case study to illustrate the importance of such standardization, using the collection of spiders (Araneae) by pitfall traps as model data. Data were analyzed using rarefaction to represent one example of a taxon sampling curve, and by a variety of traditional diversity indices to describe alpha diversity. Raw species richness and single-index diversity measures (Shannon–Wiener, Simpson's, and Fisher's α) provided contradictory results. Rarefied species richness standardized to the number of individuals collected enabled more accurate comparisons of diversity and revealed when sampling was insufficient. Focusing on arthropods occurring in forested ecosystems, we also examined the use of taxon sampling curves in current literature by reviewing 133 published articles from 14 journals. Only 26% of the published articles in our review used a taxon sampling curve, and raw species richness and the Shannon–Wiener index of diversity were the most commonly used estimates. There is clearly a need to modify how alpha diversity is measured and compared for arthropod biodiversity studies. We recommend the abandonment of both raw species richness and single-index measures of diversity, and reiterate the need to use rarefaction or a related technique that allows for meaningful comparisons of species richness while taking into account sampling effort.

scholarly journals INDEKS KEANEKARAGAMAN JENIS IKAN DEMERSAL DI PERAIRAN TARAKAN

2015 ◽  
Vol 6 (1) ◽  
pp. 47 ◽  
Author(s):  
Suprapto Suprapto
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Diversity Indices ◽  
Demersal Fish ◽  
Management Policy ◽  
Fishing Ground ◽  
Trawl Fishing ◽  
Data Capacity ◽  
Species Diversity Indices ◽  
Evenness Indices

Perairan Tarakan termasuk daerah penangkapan sumber daya ikan demersal dan udang cukup potensial di KalimantanUtara. Tingginya tingkat eksploitasi ikan demersal dengan menggunakan trawlmenyebabkan keragaman jenisnya rendah. Penelitian ikan demersal dilakukan di perairan Tarakan pada bulanMei,Agustus dan Nopember 2012. Tujuan penelitian adalah untuk memperoleh indeks keanekaragaman jenis ikan demersal. Data spesies ikan demersal dikumpulkan dari hasil tangkapan jaring trawl yang dioperasikan oleh kapal motor 20GT dengan metode sapuan area. Hasil penelitian menunjukkan bahwa jumlah taksa ikan demersal sebanyak 86 spesies yang tergolong kedalam45 famili. Komposisi jenis hasil tangkapan trawl didominasi oleh famili Leiognathidae (ikan petek), Sciaenidae (ikan gulama), Harpadontidae (ikan nomei),Apogonidae (ikan serinding) danMullidae (ikan bijinangka). Status keanekaragaman jenis termasuk dalamkategori sedang dengan indeks “Shanon-Wiener” (H’)berkisar antara 1,7-2,5 sedangkan indeks kekayaan “Margalef” (R1 ) berkisar antara 7-8. Penyebaran spesies ikan demersal bersifat sedang dengan indeks kemerataan jenis (E) rata-rata sebesra 0,5.Kelimpahan ikan demersal tidak ada yang dominan, ditunjukkan oleh nilai indeks kemerataan jenis “Pielou” (E) rata-rata sebesar 0,4.Tarakan and adjacent waters is one of potentially fishing ground of demersal fish resources in north Kalimantan. High exploitation by trawler tend to decreased of biodiversity of demersal fish in this area. Research has been conducted in the waters of Tarakan duringMay, August and November 2012. The aim of this research is to get species diversity indices of demersal fish, which is expected to be useful as one of the data capacity for sustainable fisheries management policy. Data obtained by using trawl fishing gear with a sweept area method.The results showed that demersal fish species richness 86 species, belonging to 45 families. Dominant family are Leiognathidae, Sciaenidae, Harpadontidae, Apogonidae andMullidae. Result of analysis indicate that species diversity in Tarakan waters in the medium category. Status of biodiversity consist of: range value diversityindices “Shanon-Wiener” (H’) was 1.7 to 2.5; species richness indices of “Margalef” (R1 ) are between 7-8; evenness indices of “Pielou” (E 1) was 0,5 and dominant indices “Pielou” (E) an average of 0.4.

scholarly journals KEANEKARAGAMAN DAN KOMPOSISI IKAN PADA KONDISI PASANG DAN SURUT DI MUARA SUNGAI KELAY KABUPATEN BERAU KALIMANTAN TIMUR

2019 ◽  
Vol 10 (2) ◽  
pp. 11
Author(s):  
Yudistira Yudistira ◽  
Jusmaldi Jusmaldi ◽  
Medi Hendra
Keyword(s):  
Species Diversity ◽  
Fish Species ◽  
Sampling Method ◽  
Diversity Index ◽  
High Tide ◽  
Similarity Index ◽  
Wiener Index ◽  
Dominance Index ◽  
East Kalimantan ◽  
Evenness Index

Research on diversity and composition of fish at low tide and high tide condition in downstream Kelay River, District Berau, East Kalimantan is not yet know. The purpose of this research was to determine diversity and composition of fish that present at low tide and high tide condition in downstream Kelay River. In research using purposive sampling method and various sizes gill nets used. Results of this research shows that fish were collected at three locations sampling in downstream Kelay River consist of 14 species, 9 families, and 953 individuals. Based on the number of species, diversity Shannon-Wiener index and dominance index has stable of communities, with high value of diversity index (H'=1.975), high evenness index (E=0.749), and low value of dominance index  (D= 0.173). The number of fish species found at low tide were 11 species and at high tide were 12 species. The similarity index of fish species at low tide and high tide condition were 64.3%.

scholarly journals Effect of disturbance on plant species diversity in moist tropical forest of eastern Nepal

Our Nature ◽  
2018 ◽  
Vol 16 (1) ◽  
pp. 1-7 ◽  
Author(s):  
Tilak Prasad Gautam ◽  
Tej Narayan Mandal
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Tropical Forest ◽  
Biological Diversity ◽  
Wiener Index ◽  
Diversity Pattern ◽  
Shorea Robusta ◽  
Key Factor ◽  
Disturbed Forest ◽  
The Stability

Species diversity is a key factor for the stability of ecosystems but the increasing disturbances in tropical forests resulted in the shrinkage of biological diversity. This study was conducted in undisturbed and disturbed stands of Sal (Shorea robusta Gaertn.) dominated moist tropical forest of Sunsari district, eastern Nepal in order to understand the herb, shrub and tree diversity. Present study reported the 47, 16 and 60 species of herbs, shrubs and trees, respectively. The species richness and the Shannon–Wiener index for tree species were higher in undisturbed forest (9.11 and 3.08, respectively), while the Simpson’s index (index of dominance) was higher in disturbed forest (0.11).  On the other hand, reverse case was found for shrubs and herbs where species richness and Shannon–Wiener index were higher but index of dominance was lower in disturbed forest. Changes in species diversity pattern reflect the effect of disturbance.

Regeneration Success and Plant Species Diversity of Allegheny Hardwood Stands After Roundup Application and Shelterwood Cutting

1994 ◽  
Vol 11 (4) ◽  
pp. 109-116 ◽  
Author(s):  
Stephen B. Horsley
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Plant Species ◽  
Negative Impact ◽  
Woody Species ◽  
Diversity Indices ◽  
Species Group ◽  
Plant Species Diversity ◽  
Herbaceous Species ◽  
Species Groups

Abstract The presence of desirable regeneration and plant species diversity was studied in five Allegheny hardwood stands before and for 7 yr after application of Roundup herbicide and shelterwood cutting to remove interfering understories of hayscented and New York fern, striped maple, and beech and to establish desirable hardwood regeneration. In each of five 20 ac stands, 10 ac were sprayed with 1 lb ai (active ingredient)/ac of Roundup in August 1979; the remaining 10 ac were unsprayed. The entire 20 ac stand received a shelterwood seed cut the following winter. On treated plots, fern was reduced from 57% stocking before treatment to 7% 1 yr after treatment; striped maple and beech stocking was reduced by 16% during the same time. By the fourth year after treatment, regeneration stocking of desirable hardwood species had doubled on treated plots but remained unchanged on untreated control plots. Species diversity was measured by species richness, three diversity indices--Berger-Parker, Margalef and Shannon, and index-free diversity ordering. Neither the herbicide treatment nor the shelterwood seed cut had a statistically significant effect on species richness of either woody species or herbaceous species groups. Nor was there a significant effect of treatments on woody species diversity as measured by the three diversity indices. Index-free diversity ordering showed. (1) a trend toward increase in less common species on Roundup-treated areas, and (2) the diversity of herbaceous species groups was higher in all 7 yr after treatment with Roundup. Values of the three diversity indices were higher for herbaceous species on Roundup-treated subplots for 2 to 7 yr after treatment. Much of this increase resulted from germination of seed bank grasses, sedges, and Rubus spp. With the qualification that long-term and current browsing by deer has impoverished the flora of the Allegheny hardwood forest, diminishing potential treatment effects, the study demonstrated that Roundup treatment aided desirable regeneration establishment, did not have a negative impact on woody species or herbaceous species group diversity, and may have increased diversity of herbaceous species. North. J. Appl. For. 11(4): 109-116.

scholarly journals Does Altitude Effect on Species Composition and Diversity on Himalayan Rangeland?

2017 ◽  
Vol 1 ◽  
pp. 26-30
Author(s):  
Dilkumar Limbu ◽  
Madan Koirala ◽  
Zhanhuan Shang
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Altitudinal Gradient ◽  
Diversity Index ◽  
Grazing Intensity ◽  
Floristic Composition ◽  
Diversity Indices ◽  
Altitude Effect ◽  
Wiener Diversity Index ◽  
The Impact

Himalayan rangelands have diverse floristic composition and important ecological services. The floristic diversity and composition play an important role in grassland ecosystem regulation. It is different in altitudinal gradient due to grazing intensity, climatic condition and topography. To reveal the vegetation composition values, this work was conducted on August and September 2011 in Tinjure-Milke mountain ridge, Guphapokhari, Nepal. In the present study we have described the impact of altitude on the species richness, species diversity and dispersion behavior of different plants (grasses) in Himalayan rangeland. The values of community indices were observed to be: RD (0.09 to 49.57), RF (3.57 to 14.71), RA (0.23 to 47.59), IVI (3.89 to 111.87), Shannan-Wiener diversity index (1.09 to 2.23) and species diversity evenness (0.12 to 0.19) at the study area, MilkeJaljale, eastern Nepal. Similarly, Species richness (R) value of 8.87 to 11.86 and Simpson dominant index value of 0.12 to 0.42 were observed. All diversity indices were reversed to altitudinal gradient higher the altitudes lower the values. Species richness of all plants showed a unimodal relationship with altitude. Similarly, negative correlation of density and species richness with altitude and slope was recorded.

scholarly journals Species Diversity, Distribution and Abundance of Fishes of Seti Gandaki River Basin, Pokhara, Nepal

2020 ◽  
pp. 5-14
Author(s):  
Kishor K. Pokharel ◽  
Khadga B. Basnet ◽  
Trilok C. Majpuria ◽  
Chitra B. Baniya
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
River Basin ◽  
Environmental Variables ◽  
Diversity Indices ◽  
Urban Site ◽  
Abundance And Diversity ◽  
Study Sites ◽  
Urban Sites ◽  
Tor Tor

Species diversity with indices, distribution and abundance of fishes of Seti Gandaki River Basin, Pokhara, Nepal are described from five study sites, three along the main channel and two in major tributaries. Fishes were sampled using a cast-net following pass-removal method. Environmental variables were determined following the standard methods. In total, 30 species belonging to five orders, nine families and 24 genera with absolute abundance of 10,659 were recorded. A longitudinal pattern of distribution and species richness from upstream to downstream sites (17 to 21 species) was observed. Cyprinids were dominant followed by silurids, balitorids, channids, mastacembelids, belonids and cobitids. Distribution pattern and abundance data showed that the species Tor tor, Tor putitora, Chaguninus chagunio, Barilius barila, Opsarius barna, Danio rerio, Lepidocephalichthys guntea, Parachiloglanis hodgarti and Amblyceps mangois were not common in the study area. The environmental variables such as depth, width, discharge and temperature showed effect upon species richness, abundance, distribution and diversity indices, which had lower values at upstream pre-urban sites than at downstream post-urban sites. A sharp decline in species richness, abundance and diversity indices at urban site (10 species) indicated urban influence.

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