Experimental Methods

Author(s):  
Robert B. Jordan

A kinetic study generally proceeds after the reactants, products and stoichiometry of the reaction have been satisfactorily characterized. The more one knows about the chemistry of the reaction, the better the conclusions that one can draw from a kinetic study. The discussion here describes techniques often used in inorganic studies, emphasizes their time range and general area of applicability and gives some examples of their use. Further details can be found in other sources. Any experimental kinetic method must somehow monitor change of concentration with time. Many studies are done under pseudo-first-order conditions, and then one must monitor the deficient reactant or product(s) because the other species undergo small changes in concentration. The kinetic method(s) of choice often will be dictated by the time scale of the reaction. The detection method(s) will be determined by the spectroscopic properties of the species to be monitored. The efficient use of materials can be a significant factor in the choice of method because a kinetic study generally involves a number of runs at different concentrations and temperatures, and conservation of difficult to prepare or expensive reagents may be a critical factor. The detection method should be as species specific as possible, and ideally one would like to measure both reactant disappearance and product formation. The method must not be subject to interference from other reactants and should be applicable under a wide range of concentration conditions so that the rate law can be fully explored. Often there is a practical trade-off between specificity, sensitivity and reaction time. For example, NMR is quite specific but rather slow and has relatively low sensitivity, unless the system allows time for signal accumulation. Spectrophotometry in the UV and visible range often has good sensitivity and speed, but the specificity may be poor because absorbance bands are broad and intermediates may have chromophoric properties similar to those of the reactant and/or product. Vibrational Spectrophotometry can be better if the IR bands are sharp, as in the case of metal carbonyls, but the solvent must be chosen to provide an appropriate spectral window.

2017 ◽  
Vol 35 (No. 2) ◽  
pp. 122-130 ◽  
Author(s):  
Cho Kwang-Soo ◽  
Hong Su-Young ◽  
Yun Bong-Kyoung ◽  
Won Hong-Sik ◽  
Yoon Young-Ho ◽  
...  

A reliable, qualitative PCR-based detection method for the traceability and authentication of common and Tartary buckwheat was developed. Five InDel markers developed from chloroplast genome variation between the two species were applied for 96 buckwheat accessions and all accessions were easily differentiated as Tartary and common buckwheat using these markers. We also determined the sample detection limit by PCR and qPCR as 0.001 and 0.02 ng/µl, respectively. InDel markers could detect the mixture of two species flour up to 10% contamination. InDel markers were also applied to processed foods such as noodles and tea, and we found that species-specific PCR bands could be used to identify buckwheat even after processing. Hence, these InDel markers are simple with higher specificity and sensitivity and are reliable for the authentication of buckwheat processed foods.


2016 ◽  
Vol 6 (9) ◽  
pp. 3149-3155 ◽  
Author(s):  
Yang Geng ◽  
Wenpo Shan ◽  
Shangchao Xiong ◽  
Yong Liao ◽  
Shijian Yang ◽  
...  

The effect of CeO2 for a high-efficiency CeO2/WO3–TiO2 catalyst on N2O formation in NH3-SCR reaction was investigated using a kinetic method.


2021 ◽  
Author(s):  
Nobuyuki Takahashi ◽  
Shozo Saeki ◽  
Minoru Kawahara ◽  
Hirohisa Aman ◽  
Eri Nakano ◽  
...  

We developed a novel scotoma detection system using time required for fixation to the random targets, or the "eye-guided scotoma detection method". In order to verify the "eye-guided scotoma detection method", we measured 78 eyes of 40 subjects, and examined the measurement results in comparison with the results of measurement by Humphrey perimetry. The results were as follows: (1) Mariotte scotomas were detected in 100\% of the eyes tested; (2) The false-negative rate (the percentage of cases where a scotoma was evaluated as a non-scotoma) was less than 10\%; (3) The positive point distribution in the low-sensitivity eyes was well matched. These findings suggested that the novel scotoma detection method in the current study will pave the way for the realization of mass screening to detect pathological scotoma earlier.


2010 ◽  
Vol 35 (1) ◽  
pp. 043-047 ◽  
Author(s):  
Fernanda Rausch Fernandes ◽  
Leonardo Cunha de Albuquerque ◽  
Alice Kazuko Inoue-Nagata

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Xiaoyang Pang ◽  
Ziyang Jia ◽  
Jing Lu ◽  
Shuwen Zhang ◽  
Cai Zhang ◽  
...  

Abstract Background The traditional method of bacterial identification based on 16S rRNA is a widely used and very effective detection method, but this method still has some deficiencies, especially in the identification of closely related strains. A high homology with little differences is mostly observed in the 16S sequence of closely related bacteria, which results in difficulty to distinguish them by 16S rRNA-based detection method. In order to develop a rapid and accurate method of bacterial identification, we studied the possibility of identifying bacteria with other characteristic fragments without the use of 16S rRNA as detection targets. Results We analyzed the potential of using cas (CRISPR-associated proteins) gene as a target for bacteria detection. We found that certain fragment located in the casx gene was species-specific and could be used as a specific target gene. Based on these fragments, we established a TaqMan MGB Real-time PCR method for detecting bacteria. We found that the method used in this study had the advantages of high sensitivity and good specificity. Conclusions The casx gene-based method of bacterial identification could be used as a supplement to the conventional 16 s rRNA-based detection method. This method has an advantage over the 16 s rRNA-based detection method in distinguishing the genetic relationship between closely-related bacteria, such as subgroup bacteria, and can be used as a supplement to the 16 s rRNA-based detection method.


2015 ◽  
Vol 11 (6) ◽  
pp. 20150204 ◽  
Author(s):  
Matthew J. Paul ◽  
Premananda Indic ◽  
William J. Schwartz

Communal animals often engage in group activities that require temporal synchrony among its members, including synchrony on the circadian timescale. The principles and conditions that foster such collective synchronization are not understood, but existing literature hints that the number of interacting individuals may be a critical factor. We tested this by recording individual circadian body temperature rhythms of female house mice housed singly, in twos (pairs), or in groups of five (quintets) in constant darkness; determining the daily phases of the circadian peak for each animal; and then calculating the cycle-to-cycle phase relationship between cohabiting animals over time. Significant temporal coherence was observed in quintets: the proportion of quintets (4/7), but not pairs (2/8), that became synchronized was greater than could be achieved by the complete simulated reassortment of all individuals. We speculate that the social coupling of individual circadian clocks of group members may be adaptive under certain conditions, and we propose that optimal group sizes in nature may depend not only on species-specific energetics, spatial behaviour and natural history but also on the mathematics of synchronizing assemblies of weakly coupled animal oscillators.


2003 ◽  
Vol 278 (47) ◽  
pp. 46760-46771 ◽  
Author(s):  
Heike Witt ◽  
Enrica Bordignon ◽  
Donatella Carbonera ◽  
Jan P. Dekker ◽  
Navassard Karapetyan ◽  
...  

Genetics ◽  
2001 ◽  
Vol 158 (4) ◽  
pp. 1535-1543 ◽  
Author(s):  
Susanna Campesan ◽  
Yuri Dubrova ◽  
Jeffrey C Hall ◽  
Charalambos P Kyriacou

Abstract The molecular basis of species-specific differences in courtship behavior, a critical factor in preserving species boundaries, is poorly understood. Genetic analysis of all but the most closely related species is usually impossible, given the inviability of hybrids. We have therefore applied interspecific transformation of a single candidate behavioral locus, no-on-transient A (nonA), between Drosophila virilis and D. melanogaster, to investigate whether nonA, like the period gene, might encode species-specific behavioral information. Mutations in nonA can disrupt both visual behavior and the courtship song in D. melanogaster. The lovesong of nonAdiss mutant males superficially resembles that of D. virilis, a species that diverged from D. melanogaster 40–60 mya. Transformation of the cloned D. virilis nonA gene into D. melanogaster hosts carrying a synthetic deletion of the nonA locus restored normal visual function (the phenotype most sensitive to nonA mutation). However, the courtship song of transformant males showed several features characteristic of the corresponding D. virilis signal, indicating that nonA can act as a reservoir for species-specific information. This candidate gene approach, together with interspecific transformation, can therefore provide a direct avenue to explore potential speciation genes in genetically and molecularly tractable organisms such as Drosophila.


Plant Disease ◽  
2020 ◽  
Vol 104 (9) ◽  
pp. 2469-2480
Author(s):  
Ayaka Hieno ◽  
Mingzhu Li ◽  
Auliana Afandi ◽  
Kayoko Otsubo ◽  
Haruhisa Suga ◽  
...  

Phytophthora is an oomycete genus with worldwide distribution, and many of its species cause destructive diseases. In Japan, Phytophthora species are listed as quarantine organisms with the exception of Phytophthora nicotianae. For effective quarantine control, we designed a Phytophthora genus-specific loop-mediated isothermal amplification (LAMP) primer set and a P. nicotianae species-specific quenching probe (QProbe) to establish a simultaneous LAMP-based detection method. We confirmed the specificity of the genus-specific primers, and all 161 taxa were detected. No other species in the closely related genera Pythium and Phytopythium gave positive results with the exception of two species, Phytopythium delawarense and Phytopythium fagopyri. These two species gave inconsistent results. We used annealing curve analysis with the QProbe to demonstrate that P. nicotianae could be distinguished from other species. DNA from inoculated and naturally infected plants was extracted using a time-saving extraction kit and subjected to the simultaneous detection method. We confirmed that all Phytophthora DNAs in the plant samples were detected, and P. nicotianae was specifically identified. This simultaneous detection method will make quarantine inspections faster and easier.


2008 ◽  
Vol 55 ◽  
pp. 118-126 ◽  
Author(s):  
Cristina Armellini ◽  
Andrea Chiappini ◽  
A. Chiasera ◽  
Maurizio Ferrari ◽  
Yoann Jestin ◽  
...  

We present the details of the sol-gel processing used to realize inverse silica opal, where the silica was activated with 0.3 mol% of Er3+ ions. The template (direct opal) was obtained assembling polystyrene spheres of the dimensions of 260 nm by means of a vertical deposition technique. The Er3+-activated silica inverse opal was obtained infiltrating, into the void of the template, the silica sol doped with Er3+ ions and subsequently removing the polystyrene spheres by means of calcinations. Scanning electron microscope showed that the inverse opals possess an fcc structure with a air hollow of about 210 nm. A photonic band gap in the visible range was observed from reflectance measurements. Spectroscopic properties of Er3+activated silica inverse opal were investigated by photoluminescence spectroscopy. A bandwidth of 21 nm was measured for the 4I13/2 → 4I15/2 transition of Er3+ ions upon excitation at 514.5 nm. The luminescence decay curve of the 4I13/2 metastable state of the Er3+ ions presents a lifetime τ = 16.8 ± 0.1 ms giving a very high quantum efficiency of the fabricated system. Core-shell Er3+-activated silica spheres, where the core is the silica sphere and the shell is an Er2O3-SiO2 coating is proposed as a possible route for opal fabrication. For core-shell system a quantum efficiency of about 70% was estimated.


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