Morphology, morphoclines and a new classification of the Pteriomorphia (Mollusca: Bivalvia)

Two morphological paradigms have long been used in comparative anatomical studies of bivalves: (1) the primary ligament is three-layered, with the layers corresponding to three shell layers; and (2) the primary mantle edge is composed of three folds with clearly defined functions. The results of studies of larval development indicate, on the contrary, that the primary ligament is completely organic. Calcified, fibrous ligamental material develops from lamellar material near areas of contact between ligament and shell, and development of the fibrous portions then proceeds toward the midline, finally achieving in many lineages a continuous fibrous bridge between valves. Furthermore, these results suggest that the mantle edge in the Bivalvia is primarily twofold and that the only clearly homologous structure between major groups is the periostracal groove itself. These morphological concepts, with other new and previously published data on shell ultrastructure, ligaments, mantle edges, ctenidia, palps, lips, stomachs, muscles, and photoreceptors, lead to a new picture of the evolution of primitive and derived character states in groups previously included in a subclass Pteriomorphia. Furthermore, a cladistic analysis of these data allows predictions of the morphology of ancestors which can be tested by reference to the preserved morphology and sequence of fossils. A new phylogenetic classification separates these groups into three superorders within the subclass Autobranchia: Isofilibranchia (mytiloids), Prionodonta (arcoids), and Pteriomorphia. The most complex radiation has been in the Pteriomorphia. Three orders originated in the early Palaeozoic: Pterioida, Limoida, and Ostreoida. The Pterioida and Ostreoida developed monomyarian, pleurothetic states independently, and each order developed its own mode of shell secretion. Further differentiation in the order Ostreoida occurred in the mid-Palaeozoic, producing two suborders, the Ostreina and Pectinina, both of which had already developed foliated calcitic ultrastructure from simple prismatic structure. By the early Mesozoic, the Ostreina had given rise to three extant superfamilies - the Ostreacea (true oysters), Dimyacea, and Plicatulacea - through atrophy of the foot, the assumption of a pleurothetic state on either the left or right side, and early obligate cementation. The Pectinina, through retention of the foot and the assumption of a pleurothetic mode of life, had evolved before the late Palaeozoic to the Anomiacea and Pectinacea. Within the superfamily Pectinacea, four extant families have origins ranging from early Carboniferous to Cretaceous in age: Propeamussiidae, Pectinidae, Syncyclonemidae, and Spondylidae. The new family Syncyclonemidae, which contains a genus long assumed to have become extinct at the end of the Cretaceous, is here recognized in the Recent and late Pleistocene on opposite sides of the Earth. With regard to extinct groups, many genera previously assigned to the Pteriacean family Malleidae belong in the Ostreacea on the basis of shared derived character states. Incorporation of these taxa as well as the Dimyacea in the Ostreina suggests that oysters have a dimyarian, possibly non-pleurothetic, origin and cannot have evolved from forms like the Pseudomonotids, which retained their foot and became pleurothetic. The new name Buchiacea is introduced for a set of extinct taxa within the suborder Pectinina including the Buchiidae, Monotidae, Oxytomidae, and Pseudomonotidae of previous authors. Derivation of this group is from the common ancestry of the Anomiacea and Pectinacea. The extinct Palaeozoic Aviculopectinidae, Pterinopectinidae, Deltopectinidae, and Leiopectinidae are grouped in a superfamily Aviculopectinacea, which also appears to have branched from the early ancestry of the Pectinina.

2003 ◽  
Vol 17 (6) ◽  
pp. 893 ◽  
Author(s):  
Angelika Brandt ◽  
Gary C. B. Poore

The history of the systematics of isopod suborders is summarised. Several authors have suggested that the traditional suborder Flabellifera is paraphyletic and includes one or more of the suborders Gnathiidea, Epicaridea and Anthuridea. Two suborders, Cymothoida and Sphaeromatidea, have been proposed as replacement taxa for the Flabellifera, but it has not been possible on the basis of phylogenetic analyses to elucidate significant relationships between the suborders and families. Morphological characters are used to explore relationships between 35 genus-, family- and suborder-level taxa of flabelliferan Isopoda in a cladistic analysis (using Phreatoicidea and Asellota as outgroups) and to derive a new classification. The analysis did not find a synapomorphy for 'Flabellifera' sensu lato, but recognises two diverging clades of 'long-tailed' isopods. Members of the Oniscidea are not part of either clade. Nor are the Tainisopidea, a new suborder erected for members of the family Tainisopidae. The Tainisopidea has many synapomorphies and plesiomorphic features, but does not share characters with either clade. The first clade comprises Phoratopidea (for Phoratopus remex) and sister-taxa Cymothoida and Limnoriidea. Representatives of these suborders have uropodal rami ventral to the pleotelson and articulating from side-to-side inside the branchial space. The new suborder, Phoratopidea, is for one species with unique, broad articles of pereopods 3 and 4 with reduced dactyls. It lacks the synapomorphies of the following two suborders. In members of the suborder Cymothoida, the mandibular molar is either a flat triangular blade, reduced to a conical process, or absent, and the maxillipedal endite is rarely longer than palp article 1 (or is absent), distally tapering and has few setae. The suborder Limnoriidea is diagnosed as lacking the mandibular molar, and the non-tapering, slender (except in Keuphylia) maxillipedal endite reaches to at least the distal margin of palp article 4. Members of the second clade share a vaulted pleotelson enclosing a branchial chamber defined by ventrolateral ridges and uropods lateral to the pleotelson margin that fold down alongside the branchial space. It comprises two suborders. Members of the Sphaeromatidea have pleonite 1 much narrower than pleonite 2 and a reduced (or absent) right lacinia mobilis fused to the spine row. They lack operculiform uropods, which characterise Valvifera. The suborder Anthuridea is reduced to superfamily rank and Epicaridea is reduced to two superfamilies within Cymothoida. Unambiguous relationships between most families are resolved, but Sphaeromatidae is suspected to be paraphyletic, Paravireia is placed as the most plesiomorphic of the Sphaeromatoidea and a new family, Basserolidae, is proposed. The Tainisopidea includes freshwater taxa in a relictual environment. The sole species of Phoratopidea is marine, rare, and its ecology is unknown. The Cymothoida are most diverse in tropical regions. Members of the most plesiomorphic family, the Cirolanidae, are mobile predators or scavengers and the more derived families are ectoparasites on fishes and other crustaceans. Members of the Limnoriidea are mainly tropical and at least one family is herbivorous. The Valvifera and Sphaeromatidea are benthic, with respiratory pleopods in a branchial chamber. They are most diverse in the temperate southern hemisphere, and most are detritivores.


2011 ◽  
Vol 20 (1) ◽  
pp. 161-173
Author(s):  
A.P. Kassatkina

Resuming published and own data, a revision of classification of Chaetognatha is presented. The family Sagittidae Claus & Grobben, 1905 is given a rank of subclass, Sagittiones, characterised, in particular, by the presence of two pairs of sac-like gelatinous structures or two pairs of fins. Besides the order Aphragmophora Tokioka, 1965, it contains the new order Biphragmosagittiformes ord. nov., which is a unique group of Chaetognatha with an unusual combination of morphological characters: the transverse muscles present in both the trunk and the tail sections of the body; the seminal vesicles simple, without internal complex compartments; the presence of two pairs of lateral fins. The only family assigned to the new order, Biphragmosagittidae fam. nov., contains two genera. Diagnoses of the two new genera, Biphragmosagitta gen. nov. (type species B. tarasovi sp. nov. and B. angusticephala sp. nov.) and Biphragmofastigata gen. nov. (type species B. fastigata sp. nov.), detailed descriptions and pictures of the three new species are presented.


2018 ◽  
Vol 49 (2) ◽  
pp. 103-129 ◽  
Author(s):  
Rogério Botion Lopes ◽  
Fernando Barbosa Noll

Zethus is the largest genus in Eumeninae, with over 250 species. Currently, it is divided in four subgenera: Z. (Zethus), Z. (Zethusculus), Z. (Zethoides) and Z. (Madecazethus). Z. (Zethoides), with 42 species, is subdivided in eight species groups, each considered a phylogenetic unit, that were created without any phylogenetic analysis. Eighteen species of Z. (Zethoides) corresponding to different groups were examined, altogether with terminals from distinct lineages of Zethus, Zethini and Eumenini, to perform a cladistics analysis to verify the proposed divisions. Zethus (Zethoides) and all of its species groups, except for the Z. biglumis group, were monophyletic. Zethus s.s. was paraphyletic in relation to Z. (Madecazethus), Z. (Zethoides) and Ctenochilus. Z. (Zethusculus) was also retrieved paraphyletic. Despite the subgeneric incongruences, the outgroups were too poorly represented to carry a taxonomic modification. Thus, the only alteration was the inclusion of the Z. clypearis group in the Z. biglumis group.


2018 ◽  
Vol 46 (6) ◽  
pp. 1713-1720 ◽  
Author(s):  
Amy L. Stiegler ◽  
Titus J. Boggon

Pseudoenzymes generally lack detectable catalytic activity despite adopting the overall protein fold of their catalytically competent counterparts, indeed ‘pseudo’ family members seem to be incorporated in all enzyme classes. The small GTPase enzymes are important signaling proteins, and recent studies have identified many new family members with noncanonical residues within the catalytic cleft, termed pseudoGTPases. To illustrate recent discoveries in the field, we use the p190RhoGAP proteins as an example. p190RhoGAP proteins (ARHGAP5 and ARHGAP35) are the most abundant GTPase activating proteins for the Rho family of small GTPases. These are key regulators of Rho signaling in processes such as cell migration, adhesion and cytokinesis. Structural biology has complemented and guided biochemical analyses for these proteins and has allowed discovery of two cryptic pseudoGTPase domains, and the re-classification of a third, previously identified, GTPase-fold domain as a pseudoGTPase. The three domains within p190RhoGAP proteins illustrate the diversity of this rapidly expanding pseudoGTPase group.


2020 ◽  
Author(s):  
Valerio Carruba

<p>Asteroid families are groups of asteroids that are the product of collisions or of the rotational fission of a parent object.  These groups are mainly identified in proper elements or frequencies domains.   Because of robotic telescope surveys, the number of known asteroids has increased from about 10,000 in the early 90's to more than 750,000 nowadays. Traditional approaches for identifying new members of asteroid families, like the hierarchical clustering method (HCM), may   struggle to keep up with the growing rate of new discoveries. Here we used machine learning classification algorithms to identify new family members based on the orbital distribution in proper (a,e,sin(i)) of previously known family constituents. We compared the outcome of nine classification algorithms from stand alone and ensemble approaches.  The Extremely Randomized Trees (ExtraTree) method had the highest precision, enabling to  retrieve up to 97% of family members identified with standard HCM.</p>


2011 ◽  
Vol 135 (5) ◽  
pp. 544-557 ◽  
Author(s):  
Aaron M. Gruver ◽  
Bryce P. Portier ◽  
Raymond R. Tubbs

Abstract Context.—Adenocarcinoma of the breast is the most frequent cancer affecting women in both developed and developing regions of the world. From the moment of clinical presentation until the time of pathologic diagnosis, patients affected by this disease will face daunting questions related to prognosis and treatment options. While improvements in targeted therapies have led to increased patient survival, these same advances have created the imperative to accurately stratify patients to achieve maximum therapeutic efficacy while minimizing side effects. In this evolving era of personalized medicine, there is an ever-increasing need to overcome the limitations of traditional diagnostic practice. Objective.—To summarize the molecular diagnostics traditionally used to guide prognostication and treatment of breast carcinomas, to highlight published data on the molecular classification of these tumors, and to showcase molecular assays that will supplement traditional methods of categorizing the disease. Data Sources.—A review of the literature covering the molecular diagnostics of breast carcinomas with a focus on the gene expression and array studies used to characterize the molecular signatures of the disease. Special emphasis is placed on summarizing evolving technologies useful in the diagnosis and characterization of breast carcinoma. Conclusions.—Available and emerging molecular resources will allow pathologists to provide superior diagnostic, prognostic, and predictive information about individual breast carcinomas. These advances should translate into earlier identification and tailored therapy and should ultimately improve outcome for patients affected by this disease.


2020 ◽  
Vol 157 (11) ◽  
pp. 1877-1897 ◽  
Author(s):  
J.-X. Wang ◽  
K.-X. Zhang ◽  
Brian F. Windley ◽  
B.-W. Song ◽  
X.-H. Kou ◽  
...  

AbstractAccretionary orogens contain key evidence for the conversion of oceanic to continental crust. The late tectonic history and closure time of the Palaeo-Asian Ocean are recorded in the Mazongshan subduction–accretion complex in the southern Beishan margin of the Central Asian Orogenic Belt. We present new data on the structure, petrology, geochemistry and zircon U–Pb isotope ages of the Mazongshan subduction–accretion complex, which is a tectonic mélange with a block-in-matrix structure. The blocks are of serpentinized peridotite, basalt, gabbro, basaltic andesite, chert and seamount sediments within a matrix that is mainly composed of fore-arc-trench turbidites. U–Pb zircon ages of two gabbros are 454.6 ± 2.5 Ma and 434.1 ± 3.6 Ma, an andesite has a U–Pb zircon age of 451.3 ± 3.5 Ma and a tuffaceous slate has the youngest U–Pb zircon age of 353.6 ± 5.1 Ma. These new isotopic ages, combined with published data on ophiolitic mélanges from central Beishan, indicate that the subduction–accretion of Beishan in the southernmost Central Asian Orogenic Belt lasted until Late Ordovician – Early Carboniferous time. Structure and age data demonstrate that the younging direction of accretion was southwards and that the subduction zone dipped continuously to the north. Accordingly, these results record the conversion of oceanic to continental crust in the southern Beishan accretionary collage.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Fabio Zanini ◽  
Bojk A. Berghuis ◽  
Robert C. Jones ◽  
Benedetta Nicolis di Robilant ◽  
Rachel Yuan Nong ◽  
...  

Abstract Single cell transcriptomics is revolutionising our understanding of tissue and disease heterogeneity, yet cell type identification remains a partially manual task. Published algorithms for automatic cell annotation are limited to known cell types and fail to capture novel populations, especially cancer cells. We developed northstar, a computational approach to classify thousands of cells based on published data within seconds while simultaneously identifying and highlighting new cell states such as malignancies. We tested northstar on data from glioblastoma, melanoma, and seven different healthy tissues and obtained high accuracy and robustness. We collected eleven pancreatic tumors and identified three shared and five private neoplastic cell populations, offering insight into the origins of neuroendocrine and exocrine tumors. Northstar is a useful tool to assign known and novel cell type and states in the age of cell atlases.


Zootaxa ◽  
2004 ◽  
Vol 643 (1) ◽  
pp. 1 ◽  
Author(s):  
PETER CASTRO ◽  
PETER K.L. NG ◽  
SHANE T. AHYONG

A revision of the family Trapeziidae Miers, 1886, has shown that it consists of three clades, one of which is elevated to family status, Tetraliidae fam. nov., for the genera Tetralia Dana, 1851, and Tetraloides Galil, 1986. The genera Trapezia Latreille, 1828, Calocarcinus Calman, 1909, Hexagonalia Galil, 1986, Philippicarcinus Garth & Kim, 1983, Quadrella Dana, 1851, and Sphenomerides Rathbun, 1897, remain in the Trapeziidae; Domecia Eydoux & Souleyet, 1842, Jonesius Sankarankutty, 1962, Maldivia Borradaile, 1902, Palmyria Galil & Takeda, 1986, and the fossil genus Eomaldivia M ller & Collins, 1991, in Domeciidae Ortmann, 1893. Cladistic analysis shows that Trapeziidae sensu Miers, 1886, consists of three clades that show convergence as a result of similar habits as symbionts of reef corals and other cnidarians. A list of all recognised genera and species in the three families and their primary synonyms is provided. Keys are also included for four families of Brachyura symbiotic with reef corals, and for the genera and species of Domeciidae, Tetraliidae, and Trapeziidae. Some rare colour figures are reproduced. Three name changes have resulted within the Tetraliidae: Cancer glaberrimus Herbst, 1790, for Tetralia fulva Ser ne, 1984, and Cancer mutus Linnaeus, 1758, for Tetralia armata Dana, 1852, and Tetralia vanninii Galil & Clark, 1988. Nomenclatural problems associated with the repeated use of "forma typica" for various species of Trapezia and Tetralia are resolved. To stabilise the nomenclature of a number of well-known species, neotypes are designated for 13 species of Trapeziidae for which type material is not extant: Trapezia cymodoce (Herbst, 1801), and its three synonyms (Trapezia dentifrons Latreille, 1828, Trapezia dentata var. subintegra Dana, 1852, Trapezia cymodoce var. ornatus Chen, 1933); Trapezia bidentata (Forsk l, 1775), and one of its synonyms (Trapezia ferruginea Latreille, 1828); Trapezia digitalis Latreille, 1828, and one of its synonyms (Trapezia nigrofusca Stimpson, 1858); Trapezia septata Dana, 1852, and one of its synonyms (Trapezia reticulata Stimpson, 1858); Trapezia areolata Dana, 1852; Trapezia bella Dana, 1852; and Trapezia speciosa Dana, 1852. Neotypes are also designated for seven species of Tetraliidae: Tetralia glaberrima (Herbst, 1790), and three synonyms (Trapezia integra Latreille, 1828, Trapezia serratifrons Jacquinot, 1846, Tetralia laevissima Stimpson, 1858); Tetralia muta (Linnaeus, 1758), and one of its synonyms (Tetralia armata Dana, 1852); and Tetraloides nigrifrons (Dana, 1852).


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