scholarly journals Automated Discrimination of Dicentric and Monocentric Chromosomes by Machine Learning-based Image Processing

2016 ◽  
Author(s):  
Yanxin Li ◽  
Joan H. Knoll ◽  
Ruth Wilkins ◽  
Farrah N. Flegal ◽  
Peter K. Rogan
Keyword(s):  
Machine Learning ◽  
Peripheral Blood Lymphocytes ◽  
Image Features ◽  
Tuning Parameter ◽  
Support Vector ◽  
High Dose ◽  
Predictive Values ◽  
Wide Range ◽  
Chromosome Separation

AbstractDose from radiation exposure can be estimated from dicentric chromosome (DC) frequencies in metaphase cells of peripheral blood lymphocytes. We automated DC detection by extracting features in Giemsa-stained metaphase chromosome images and classifying objects by machine learning (ML). DC detection involves i) intensity thresholded segmentation of metaphase objects, ii) chromosome separation by watershed transformation and elimination of inseparable chromosome clusters, fragments and staining debris using a morphological decision tree filter, iii) determination of chromosome width and centreline, iv) derivation of centromere candidates and v) distinction of DCs from monocentric chromosomes (MC) by ML. Centromere candidates are inferred from 14 image features input to a Support Vector Machine (SVM). 16 features derived from these candidates are then supplied to a Boosting classifier and a second SVM which determines whether a chromosome is either a DC or MC. The SVM was trained with 292 DCs and 3135 MCs, and then tested with cells exposed to either low (1 Gy) or high (2-4 Gy) radiation dose. Results were then compared with those of 3 experts. True positive rates (TPR) and positive predictive values (PPV) were determined for the tuning parameter, σ. At larger σ, PPV decreases and TPR increases. At high dose, for σ= 1.3, TPR = 0.52 and PPV = 0.83, while at σ= 1.6, the TPR = 0.65 and PPV = 0.72. At low dose and σ = 1.3, TPR = 0.67 and PPV = 0.26. The algorithm differentiates DCs from MCs, overlapped chromosomes and other objects with acceptable accuracy over a wide range of radiation exposures.

scholarly journals Automated selection of mid-height intervertebral disc slice in traverse lumbar spine MRI using a combination of deep learning feature and machine learning classifier

PLoS ONE ◽  
2022 ◽  
Vol 17 (1) ◽  
pp. e0261659
Author(s):  
Friska Natalia ◽  
Julio Christian Young ◽  
Nunik Afriliana ◽  
Hira Meidia ◽  
Reyhan Eddy Yunus ◽  
...  
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Lumbar Spine ◽  
Intervertebral Disc ◽  
Classification Performance ◽  
Image Features ◽  
Gaussian Kernel ◽  
Support Vector ◽  
Wide Range ◽  
Spine Mri

Abnormalities and defects that can cause lumbar spinal stenosis often occur in the Intervertebral Disc (IVD) of the patient’s lumbar spine. Their automatic detection and classification require an application of an image analysis algorithm on suitable images, such as mid-sagittal images or traverse mid-height intervertebral disc slices, as inputs. Hence the process of selecting and separating these images from other medical images in the patient’s set of scans is necessary. However, the technological progress in making this process automated is still lagging behind other areas in medical image classification research. In this paper, we report the result of our investigation on the suitability and performance of different approaches of machine learning to automatically select the best traverse plane that cuts closest to the half-height of an IVD from a database of lumbar spine MRI images. This study considers images features extracted using eleven different pre-trained Deep Convolution Neural Network (DCNN) models. We investigate the effectiveness of three dimensionality-reduction techniques and three feature-selection techniques on the classification performance. We also investigate the performance of five different Machine Learning (ML) algorithms and three Fully Connected (FC) neural network learning optimizers which are used to train an image classifier with hyperparameter optimization using a wide range of hyperparameter options and values. The different combinations of methods are tested on a publicly available lumbar spine MRI dataset consisting of MRI studies of 515 patients with symptomatic back pain. Our experiment shows that applying the Support Vector Machine algorithm with a short Gaussian kernel on full-length image features extracted using a pre-trained DenseNet201 model is the best approach to use. This approach gives the minimum per-class classification performance of around 0.88 when measured using the precision and recall metrics. The median performance measured using the precision metric ranges from 0.95 to 0.99 whereas that using the recall metric ranges from 0.93 to 1.0. When only considering the L3/L4, L4/L5, and L5/S1 classes, the minimum F1-Scores range between 0.93 to 0.95, whereas the median F1-Scores range between 0.97 to 0.99.

scholarly journals Value of radiomics in differential diagnosis of chromophobe renal cell carcinoma and renal oncocytoma

2019 ◽  
Vol 45 (10) ◽  
pp. 3193-3201 ◽  
Author(s):  
Yajuan Li ◽  
Xialing Huang ◽  
Yuwei Xia ◽  
Liling Long
Keyword(s):  
Machine Learning ◽  
Differential Diagnosis ◽  
Cell Carcinoma ◽  
Area Under The Curve ◽  
Image Features ◽  
Renal Tumors ◽  
Support Vector ◽  
Svm Classifier ◽  
Renal Oncocytoma ◽  
Lasso Regression

Abstract Purpose To explore the value of CT-enhanced quantitative features combined with machine learning for differential diagnosis of renal chromophobe cell carcinoma (chRCC) and renal oncocytoma (RO). Methods Sixty-one cases of renal tumors (chRCC = 44; RO = 17) that were pathologically confirmed at our hospital between 2008 and 2018 were retrospectively analyzed. All patients had undergone preoperative enhanced CT scans including the corticomedullary (CMP), nephrographic (NP), and excretory phases (EP) of contrast enhancement. Volumes of interest (VOIs), including lesions on the images, were manually delineated using the RadCloud platform. A LASSO regression algorithm was used to screen the image features extracted from all VOIs. Five machine learning classifications were trained to distinguish chRCC from RO by using a fivefold cross-validation strategy. The performance of the classifier was mainly evaluated by areas under the receiver operating characteristic (ROC) curve and accuracy. Results In total, 1029 features were extracted from CMP, NP, and EP. The LASSO regression algorithm was used to screen out the four, four, and six best features, respectively, and eight features were selected when CMP and NP were combined. All five classifiers had good diagnostic performance, with area under the curve (AUC) values greater than 0.850, and support vector machine (SVM) classifier showed a diagnostic accuracy of 0.945 (AUC 0.964 ± 0.054; sensitivity 0.999; specificity 0.800), showing the best performance. Conclusions Accurate preoperative differential diagnosis of chRCC and RO can be facilitated by a combination of CT-enhanced quantitative features and machine learning.

scholarly journals Prediction of Dead Oil Viscosity: Machine Learning vs. Classical Correlations

Energies ◽  
2021 ◽  
Vol 14 (4) ◽  
pp. 930
Author(s):  
Fahimeh Hadavimoghaddam ◽  
Mehdi Ostadhassan ◽  
Ehsan Heidaryan ◽  
Mohammad Ali Sadri ◽  
Inna Chapanova ◽  
...  
Keyword(s):  
Machine Learning ◽  
Viscosity Data ◽  
Oil Viscosity ◽  
Pvt Data ◽  
Proposed Model ◽  
Wide Range ◽  
Engineering Problems ◽  
Functional Forms ◽  
Insight Into

Dead oil viscosity is a critical parameter to solve numerous reservoir engineering problems and one of the most unreliable properties to predict with classical black oil correlations. Determination of dead oil viscosity by experiments is expensive and time-consuming, which means developing an accurate and quick prediction model is required. This paper implements six machine learning models: random forest (RF), lightgbm, XGBoost, multilayer perceptron (MLP) neural network, stochastic real-valued (SRV) and SuperLearner to predict dead oil viscosity. More than 2000 pressure–volume–temperature (PVT) data were used for developing and testing these models. A huge range of viscosity data were used, from light intermediate to heavy oil. In this study, we give insight into the performance of different functional forms that have been used in the literature to formulate dead oil viscosity. The results show that the functional form f(γAPI,T), has the best performance, and additional correlating parameters might be unnecessary. Furthermore, SuperLearner outperformed other machine learning (ML) algorithms as well as common correlations that are based on the metric analysis. The SuperLearner model can potentially replace the empirical models for viscosity predictions on a wide range of viscosities (any oil type). Ultimately, the proposed model is capable of simulating the true physical trend of the dead oil viscosity with variations of oil API gravity, temperature and shear rate.

MACHINE LEARNING ALGORITHMS FOR IDENTIFICATION OF ABNORMAL GLOW CURVES AND ASSOCIATED ABNORMALITY IN CaSO4:DY-BASED PERSONNEL MONITORING DOSIMETERS

2020 ◽  
Vol 190 (3) ◽  
pp. 342-351
Author(s):  
Munir S Pathan ◽  
S M Pradhan ◽  
T Palani Selvam
Keyword(s):  
Machine Learning ◽  
Glow Curve ◽  
Good Accuracy ◽  
Machine Learning Algorithms ◽  
Support Vector ◽  
Computationally Efficient ◽  
Artificial Neural Network Ann ◽  
First Time

Abstract In the present study, machine learning (ML) methods for the identification of abnormal glow curves (GC) of CaSO4:Dy-based thermoluminescence dosimeters in individual monitoring are presented. The classifier algorithms, random forest (RF), artificial neural network (ANN) and support vector machine (SVM) are employed for identifying not only the abnormal glow curve but also the type of abnormality. For the first time, the simplest and computationally efficient algorithm based on RF is presented for GC classifications. About 4000 GCs are used for the training and validation of ML algorithms. The performance of all algorithms is compared by using various parameters. Results show a fairly good accuracy of 99.05% for the classification of GCs by RF algorithm. Whereas 96.7% and 96.1% accuracy is achieved using ANN and SVM, respectively. The RF-based classifier is recommended for GC classification as well as in assisting the fault determination of the TLD reader system.

scholarly journals Machine-Learning-Based Muscle Control of a 3D-Printed Bionic Arm

Sensors ◽  
2020 ◽  
Vol 20 (11) ◽  
pp. 3144 ◽  
Author(s):  
Sherif Said ◽  
Ilyes Boulkaibet ◽  
Murtaza Sheikh ◽  
Abdullah S. Karar ◽  
Samer Alkork ◽  
...  
Keyword(s):  
Machine Learning ◽  
Neural Networks ◽  
Support Vector Machine ◽  
Experimental Test ◽  
Support Vector Machine Classifier ◽  
Low Cost ◽  
Support Vector ◽  
Wide Range ◽  
3D Printed ◽  
Semg Signals

In this paper, a customizable wearable 3D-printed bionic arm is designed, fabricated, and optimized for a right arm amputee. An experimental test has been conducted for the user, where control of the artificial bionic hand is accomplished successfully using surface electromyography (sEMG) signals acquired by a multi-channel wearable armband. The 3D-printed bionic arm was designed for the low cost of 295 USD, and was lightweight at 428 g. To facilitate a generic control of the bionic arm, sEMG data were collected for a set of gestures (fist, spread fingers, wave-in, wave-out) from a wide range of participants. The collected data were processed and features related to the gestures were extracted for the purpose of training a classifier. In this study, several classifiers based on neural networks, support vector machine, and decision trees were constructed, trained, and statistically compared. The support vector machine classifier was found to exhibit an 89.93% success rate. Real-time testing of the bionic arm with the optimum classifier is demonstrated.

scholarly journals Computer-assisted framework for machine-learning–based delineation of GTV regions on datasets of planning CT and PET/CT images

2017 ◽  
Vol 58 (1) ◽  
pp. 123-134 ◽  
Author(s):  
Koujiro Ikushima ◽  
Hidetaka Arimura ◽  
Ze Jin ◽  
Hidetake Yabu-uchi ◽  
Jumpei Kuwazuru ◽  
...  
Keyword(s):  
Machine Learning ◽  
Ground Glass Opacity ◽  
Global Optimum ◽  
Image Features ◽  
Support Vector ◽  
Computer Assisted ◽  
Dice Similarity Coefficient ◽  
Radiation Oncologists ◽  
Tumor Region ◽  
Leave One Out

Abstract We have proposed a computer-assisted framework for machine-learning–based delineation of gross tumor volumes (GTVs) following an optimum contour selection (OCS) method. The key idea of the proposed framework was to feed image features around GTV contours (determined based on the knowledge of radiation oncologists) into a machine-learning classifier during the training step, after which the classifier produces the ‘degree of GTV’ for each voxel in the testing step. Initial GTV regions were extracted using a support vector machine (SVM) that learned the image features inside and outside each tumor region (determined by radiation oncologists). The leave-one-out-by-patient test was employed for training and testing the steps of the proposed framework. The final GTV regions were determined using the OCS method that can be used to select a global optimum object contour based on multiple active delineations with a LSM around the GTV. The efficacy of the proposed framework was evaluated in 14 lung cancer cases [solid: 6, ground-glass opacity (GGO): 4, mixed GGO: 4] using the 3D Dice similarity coefficient (DSC), which denotes the degree of region similarity between the GTVs contoured by radiation oncologists and those determined using the proposed framework. The proposed framework achieved an average DSC of 0.777 for 14 cases, whereas the OCS-based framework produced an average DSC of 0.507. The average DSCs for GGO and mixed GGO were 0.763 and 0.701, respectively, obtained by the proposed framework. The proposed framework can be employed as a tool to assist radiation oncologists in delineating various GTV regions.

scholarly journals A review of Machine Learning (ML) algorithms used for modeling travel mode choice

DYNA ◽  
2019 ◽  
Vol 86 (211) ◽  
pp. 32-41 ◽  
Author(s):  
Juan D. Pineda-Jaramillo
Keyword(s):  
Machine Learning ◽  
Choice Model ◽  
Mode Choice ◽  
Multinomial Logit Model ◽  
Support Vector ◽  
Travel Mode ◽  
Wide Range ◽  
Travel Mode Choice ◽  
And Cluster Analysis ◽  
Transportation Research

In recent decades, transportation planning researchers have used diverse types of machine learning (ML) algorithms to research a wide range of topics. This review paper starts with a brief explanation of some ML algorithms commonly used for transportation research, specifically Artificial Neural Networks (ANN), Decision Trees (DT), Support Vector Machines (SVM) and Cluster Analysis (CA). Then, these different methodologies used by researchers for modeling travel mode choice are collected and compared with the Multinomial Logit Model (MNL) which is the most commonly-used discrete choice model. Finally, the characterization of ML algorithms is discussed and Random Forest (RF), a variant of Decision Tree algorithms, is presented as the best methodology for modeling travel mode choice.

scholarly journals Predictive Modeling for Frailty Conditions in Elderly People: Machine Learning Approaches (Preprint)

2019 ◽  
Author(s):  
Adane Tarekegn ◽  
Fulvio Ricceri ◽  
Giuseppe Costa ◽  
Elisa Ferracin ◽  
Mario Giacobini
Keyword(s):  
Machine Learning ◽  
Older Adults ◽  
Elderly People ◽  
Emergency Admission ◽  
Evaluation Metrics ◽  
Support Vector ◽  
Learning Models ◽  
Increased Risk ◽  
Wide Range ◽  
Machine Learning Models

BACKGROUND Frailty is one of the most critical age-related conditions in older adults. It is often recognized as a syndrome of physiological decline in late life, characterized by a marked vulnerability to adverse health outcomes. A clear operational definition of frailty, however, has not been agreed so far. There is a wide range of studies on the detection of frailty and their association with mortality. Several of these studies have focused on the possible risk factors associated with frailty in the elderly population while predicting who will be at increased risk of frailty is still overlooked in clinical settings. OBJECTIVE The objective of our study was to develop predictive models for frailty conditions in older people using different machine learning methods based on a database of clinical characteristics and socioeconomic factors. METHODS An administrative health database containing 1,095,612 elderly people aged 65 or older with 58 input variables and 6 output variables was used. We first identify and define six problems/outputs as surrogates of frailty. We then resolve the imbalanced nature of the data through resampling process and a comparative study between the different machine learning (ML) algorithms – Artificial neural network (ANN), Genetic programming (GP), Support vector machines (SVM), Random Forest (RF), Logistic regression (LR) and Decision tree (DT) – was carried out. The performance of each model was evaluated using a separate unseen dataset. RESULTS Predicting mortality outcome has shown higher performance with ANN (TPR 0.81, TNR 0.76, accuracy 0.78, F1-score 0.79) and SVM (TPR 0.77, TNR 0.80, accuracy 0.79, F1-score 0.78) than predicting the other outcomes. On average, over the six problems, the DT classifier has shown the lowest accuracy, while other models (GP, LR, RF, ANN, and SVM) performed better. All models have shown lower accuracy in predicting an event of an emergency admission with red code than predicting fracture and disability. In predicting urgent hospitalization, only SVM achieved better performance (TPR 0.75, TNR 0.77, accuracy 0.73, F1-score 0.76) with the 10-fold cross validation compared with other models in all evaluation metrics. CONCLUSIONS We developed machine learning models for predicting frailty conditions (mortality, urgent hospitalization, disability, fracture, and emergency admission). The results show that the prediction performance of machine learning models significantly varies from problem to problem in terms of different evaluation metrics. Through further improvement, the model that performs better can be used as a base for developing decision-support tools to improve early identification and prediction of frail older adults.

scholarly journals Predictive Modeling of Henry’s Law Constant in Chemical Structures Using LSSVM and ANFIS Algorithms

2020 ◽  
Author(s):  
Qikai Wang ◽  
Aiqin Yao ◽  
Manouchehr Shokri ◽  
Adrienn A. Dineva
Keyword(s):  
Chemical Structure ◽  
Fuzzy Inference ◽  
Low Cost ◽  
Support Vector ◽  
Inference System ◽  
Chemical Structures ◽  
Neuro Fuzzy ◽  
Wide Range ◽  
Accuracy Of Measurement

Henry’s constants for different existing compounds in water have great importance in transfer calculations. Measurement of these constants face different difficulties including high costs of experiment and low accuracy of measurement apparatus. Due to these facts, proposing a low cost and accurate approach becomes highlighted. To this end, adaptive neuro-fuzzy inference system (ANFIS) and least squares support vector machine (LSSVM) have been used as Henry’s constant predictor tools. The molecular structure of compounds has been used as inputs of models. After training the models, the visual and mathematical studies of outputs have been done. The coefficients of determination of LSSVM and ANFIS algorithms are 0.999 and 0.990 respectively. According to the comprehensiveness of databank and accurate prediction of algorithms, it can be concluded that LSSVM and ANFIS algorithms are accurate methods for prediction of Henry’s constant in wide range of chemical structure of compounds in water.

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