scholarly journals Evolutionary processes shaping diversity across the Homo lineage

2017 ◽  
Author(s):  
Lauren Schroeder ◽  
Rebecca Rogers Ackermann
Keyword(s):  
Genetic Drift ◽  
Statistical Tests ◽  
Morphological Diversity ◽  
Small Population ◽  
Evolutionary Processes ◽  
Selection Processes ◽  
Novel Traits ◽  
Population Sizes ◽  
Stochastic Selection ◽  
Insight Into

AbstractRecent fossil finds have highlighted extensive morphological diversity within our genus, Homo, and the co-existence of a number of species. However, little is known about the evolutionary processes responsible for producing this diversity. Understanding the action of these processes can provide insight into how and why our lineage evolved and diversified. Here, we examine cranial and mandibular variation and diversification from the earliest emergence of our genus at 2.8 Ma until the Late Pleistocene (0.126-0.0117 Ma), using statistical tests developed from quantitative genetics theory to evaluate whether stochastic (genetic drift) versus non-stochastic (selection) processes were responsible for the observed variation. Results show that random processes can account for species diversification for most traits, including neurocranial diversification, and across all time periods. Where selection was found to shape diversification, we show that: 1) adaptation was important in the earliest migration of Homo out of Africa; 2) selection played a role in shaping mandibular and maxillary diversity among Homo groups, possibly due to dietary differences; and 3) Homo rudolfensis is adaptively different from other early Homo taxa, including the earliest known Homo specimen. These results show that genetic drift, and likely small population sizes, were important factors shaping the evolution of Homo and many of its novel traits, but that selection played an essential role in driving adaptation to new contexts.

Estimating the exposure of carnivorous plants to rapid climatic change

2018 ◽  
Author(s):  
Matthew C. Fitzpatrick ◽  
Aaron M. Ellison
Keyword(s):  
Climatic Change ◽  
Habitat Suitability ◽  
Species Distributions ◽  
Dispersal Limitation ◽  
Small Population ◽  
Carnivorous Plant ◽  
Carnivorous Plants ◽  
Habitat Specialization ◽  
Population Sizes ◽  
Suitable Habitats

Climatic change likely will exacerbate current threats to carnivorous plants. However, estimating the severity of climatic change is challenged by the unique ecology of carnivorous plants, including habitat specialization, dispersal limitation, small ranges, and small population sizes. We discuss and apply methods for modeling species distributions to overcome these challenges and quantify the vulnerability of carnivorous plants to rapid climatic change. Results suggest that climatic change will reduce habitat suitability for most carnivorous plants. Models also project increases in habitat suitability for many species, but the extent to which these increases may offset habitat losses will depend on whether individuals can disperse to and establish in newly suitable habitats outside of their current distribution. Reducing existing stressors and protecting habitats where numerous carnivorous plant species occur may ameliorate impacts of climatic change on this unique group of plants.

scholarly journals Recombination Can Evolve in Large Finite Populations Given Selection on Sufficient Loci

Genetics ◽  
2003 ◽  
Vol 165 (4) ◽  
pp. 2249-2258 ◽  
Author(s):  
Mark M Iles ◽  
Kevin Walters ◽  
Chris Cannings
Keyword(s):  
Experimental Evidence ◽  
Genetic Drift ◽  
Finite Population ◽  
Selective Advantage ◽  
Indirect Selection ◽  
Small Populations ◽  
Finite Populations ◽  
Population Sizes ◽  
Population Recombination

AbstractIt is well known that an allele causing increased recombination is expected to proliferate as a result of genetic drift in a finite population undergoing selection, without requiring other mechanisms. This is supported by recent simulations apparently demonstrating that, in small populations, drift is more important than epistasis in increasing recombination, with this effect disappearing in larger finite populations. However, recent experimental evidence finds a greater advantage for recombination in larger populations. These results are reconciled by demonstrating through simulation without epistasis that for m loci recombination has an appreciable selective advantage over a range of population sizes (am, bm). bm increases steadily with m while am remains fairly static. Thus, however large the finite population, if selection acts on sufficiently many loci, an allele that increases recombination is selected for. We show that as selection acts on our finite population, recombination increases the variance in expected log fitness, causing indirect selection on a recombination-modifying locus. This effect is enhanced in those populations with more loci because the variance in phenotypic fitnesses in relation to the possible range will be smaller. Thus fixation of a particular haplotype is less likely to occur, increasing the advantage of recombination.

scholarly journals Polygenic local adaptation in metapopulations: a stochastic eco-evolutionary model

2020 ◽  
Author(s):  
Enikő Szép ◽  
Himani Sachdeva ◽  
Nick Barton
Keyword(s):  
Population Size ◽  
Local Adaptation ◽  
Genetic Drift ◽  
Diffusion Approximation ◽  
Joint Distribution ◽  
Evolutionary Model ◽  
Ecological Niches ◽  
Demographic Stochasticity ◽  
Linkage Disequilibria ◽  
Population Sizes

AbstractThis paper analyses the conditions for local adaptation in a metapopulation with infinitely many islands under a model of hard selection, where population size depends on local fitness. Each island belongs to one of two distinct ecological niches or habitats. Fitness is influenced by an additive trait which is under habitat-dependent directional selection. Our analysis is based on the diffusion approximation and accounts for both genetic drift and demographic stochasticity. By neglecting linkage disequilibria, it yields the joint distribution of allele frequencies and population size on each island. We find that under hard selection, the conditions for local adaptation in a rare habitat are more restrictive for more polygenic traits: even moderate migration load per locus at very many loci is sufficient for population sizes to decline. This further reduces the efficacy of selection at individual loci due to increased drift and because smaller populations are more prone to swamping due to migration, causing a positive feedback between increasing maladaptation and declining population sizes. Our analysis also highlights the importance of demographic stochasticity, which exacerbates the decline in numbers of maladapted populations, leading to population collapse in the rare habitat at significantly lower migration than predicted by deterministic arguments.

scholarly journals Monoclonal antibodies reactive with hairy cell leukemia [see comments]

Blood ◽  
1989 ◽  
Vol 74 (1) ◽  
pp. 320-325 ◽  
Author(s):  
L Visser ◽  
A Shaw ◽  
J Slupsky ◽  
H Vos ◽  
S Poppema
Keyword(s):  
Monoclonal Antibodies ◽  
B Cell ◽  
Hairy Cell Leukemia ◽  
Small Population ◽  
Lymphocytic Leukemia ◽  
Hairy Cell ◽  
Cell Leukemia ◽  
Hairy Cells ◽  
A Minor ◽  
Insight Into

Monoclonal antibodies reactive with hairy cell leukemia were developed to aid in the diagnosis of this subtype of B cell chronic lymphocytic leukemia and to gain better insight into the origin of hairy cells. Three antibodies were found to be of value in the diagnosis of hairy cell leukemia. Antibody B-ly 2 can be considered a pan-B cell reagent and generally reacts similar to CD22 antibodies. Antibody B-ly 6 is reactive with the same antigen as CD11c (p150/95), an antigen that is present on hairy cell leukemia, macrophages, and a minor subpopulation of lymphocytes. Antibody B-ly 7 is a unique antibody reactive with 144 Kd antigen present only on hairy cell leukemia and a very small population of normal B lymphocytes. This subpopulation may be the counterpart of hairy cells.

scholarly journals Nestling Sex Ratio in the Southwestern Willow Flycatcher

The Condor ◽  
2002 ◽  
Vol 104 (4) ◽  
pp. 877-881
Author(s):  
Eben H. Paxton ◽  
Mark K. Sogge ◽  
Tracy D. McCarthey ◽  
Paul Keim
Keyword(s):  
Sex Ratio ◽  
Molecular Genetic ◽  
Small Population ◽  
Geographic Isolation ◽  
Breeding Populations ◽  
Population Sizes ◽  
Genetic Techniques ◽  
Willow Flycatcher ◽  
Empidonax Traillii ◽  
Negative Impacts

AbstractUsing molecular-genetic techniques, we determined the gender of 202 Southwestern Willow Flycatcher (Empidonax traillii extimus) nestlings from 95 nests sampled over a five-year period. Overall nestling sex ratio did not vary significantly from 50:50 among years, by clutch order, or by mating strategy (monogamous vs. polygamous pairings). However, we did observe significant differences among the four sites sampled, with sex ratios biased either toward males or females at the different sites. Given the small population sizes and geographic isolation of many of the endangered subspecies' breeding populations, sex-ratio differences may have localized negative impacts.Cociente de Sexos en Polluelos de Empidonax traillii extimusResumen. Utilizando técnicas moleculares determinamos el sexo de 202 polluelos de Empidonax traillii extimus pertenecientes a 95 nidos que fueron muestreados durante un período de cinco años. En general, el cociente de sexos no varió significativamente de 50:50 entre años, ya sea por orden de la nidada o por estrategia de apareamiento (monogamia vs. poligamia). Sin embargo, observamos diferencias significativas entre los cuatro sitios muestreados, en los cuales la razón de sexos estuvo sesgada hacia los machos o las hembras dependiendo del sitio. Dados los pequeños tamaños poblacionales y el aislamiento geográfico de muchas de las poblaciones reproductivas de esta subespecie en peligro, las diferencias en el cociente de sexos pueden tener un impacto negativo a nivel local.

scholarly journals Exquisitely Preserved Fossil Snakes of Messel: Insight into the Evolution, Biogeography, Habitat Preferences and Sensory Ecology of Early Boas

Diversity ◽  
2020 ◽  
Vol 12 (3) ◽  
pp. 100 ◽  
Author(s):  
Agustín Scanferla ◽  
Krister T. Smith
Keyword(s):  
Body Size ◽  
New World ◽  
Middle Eocene ◽  
Habitat Preferences ◽  
Sensory Ecology ◽  
Morphological Diversity ◽  
Predator Prey ◽  
Upper Jaw ◽  
Spectrum Evaluation ◽  
Insight Into

Our knowledge of early evolution of snakes is improving, but all that we can infer about the evolution of modern clades of snakes such as boas (Booidea) is still based on isolated bones. Here, we resolve the phylogenetic relationships of Eoconstrictor fischeri comb. nov. and other booids from the early-middle Eocene of Messel (Germany), the best-known fossil snake assemblage yet discovered. Our combined analyses demonstrate an affinity of Eoconstrictor with Neotropical boas, thus entailing a South America-to-Europe dispersal event. Other booid species from Messel are related to different New World clades, reinforcing the cosmopolitan nature of the Messel booid fauna. Our analyses indicate that Eoconstrictor was a terrestrial, medium- to large-bodied snake that bore labial pit organs in the upper jaw, the earliest evidence that the visual system in snakes incorporated the infrared spectrum. Evaluation of the known palaeobiology of Eoconstrictor provides no evidence that pit organs played a role in the predator–prey relations of this stem boid. At the same time, the morphological diversity of Messel booids reflects the occupation of several terrestrial macrohabitats, and even in the earliest booid community the relation between pit organs and body size is similar to that seen in booids today.

Population viability analysis on a native Danish cattle breed

2016 ◽  
Vol 59 ◽  
pp. 105-112 ◽  
Author(s):  
Morten Hertz ◽  
Iben Ravnborg Jensen ◽  
Laura Østergaard Jensen ◽  
Iben Vejrum Nielsen ◽  
Jacob Winde ◽  
...  
Keyword(s):  
Bos Taurus ◽  
Extinction Risk ◽  
Population Viability Analysis ◽  
Cattle Breed ◽  
Population Viability ◽  
Small Population ◽  
Viability Analysis ◽  
Probability Of Survival ◽  
Population Sizes ◽  
Breeding Pool

SummaryMany domestic breeds face challenges concerning genetic variability, because of their small population sizes along with a high risk of inbreeding. Therefore, it is important to obtain knowledge on their extinction risk, along with the possible benefits of certain breeding strategies. Since many domestic breeds face the same problems, results from such studies can be applied across breeds and species. Here a Population Viability Analysis (PVA) was implemented to simulate the future probability of extinction for a population of the endangered Danish Jutland cattle (Bos taurus), based on the software Vortex. A PVA evaluates the extinction risk of a population by including threats and demographic values. According to the results from the PVA the population will go extinct after 122 years with the current management. Four scenarios were created to investigate which changes in the breeding scheme would have the largest effect on the survival probabilities, including Scenario 1: More females in the breeding pool, scenario 2: More males in the breeding pool, scenario 3: Increased carrying capacity, and scenario 4: Supplementing males to the population through artificial insemination using semen from bulls used in the populations in past generations. All scenarios showed a positive effect on the population's probability of survival, and with a combination of the different scenarios, the population size seems to be stabilized.

Biology and conservation of Coptis teeta Wall. – an endemic and endangered medicinal herb of Eastern Himalaya

1998 ◽  
Vol 25 (3) ◽  
pp. 262-272 ◽  
Author(s):  
M. K. PANDIT ◽  
C. R. BABU
Keyword(s):  
Scientific Information ◽  
Small Population ◽  
Vital Role ◽  
Eastern Himalaya ◽  
Evolutionary Divergence ◽  
External Threats ◽  
Population Sizes ◽  
Over Exploitation ◽  
Endangered Medicinal Herb ◽  
The Tropics

Medicinal plants are a valuable resource for regional economic development in the tropics, and the Eastern Himalaya in particular harbours many such species. Extensive deforestation and over-exploitation in this region have brought several species to the brink of extinction, and Coptis teeta is such an endangered species; yet scientific information for its conservation is lacking. Investigations on the distribution range, demography, ecology, cytology, reproductive biology and population genetic structure of C. teeta were carried out; it was found to be endemic to a small area, to occupy a very narrow habitat and to be highly dispersed with very small population sizes. Edaphic factors were found to have played a vital role in ecological preference, natural distribution and evolutionary divergence of the species. The species exhibits a ‘K’ strategy, high male sterility, low reproductive success and efficiency, inadequate seed dispersal, and little genetic variability. A combination of these genetic hurdles and external threats in the form of habitat disturbance and over-exploitation for commercial purposes could result in its extinction. The species was found to have highly specific microsite requirements that cannot be met in other habitats. It is argued that in situ conservation measures would be the best strategy for the continued survival of this species. For effective management of the species it is recommended that its habitat be declared a protected area with the active cooperation of local inhabitants including the sharing of benefits of conservation.

scholarly journals A theoretical analysis of linkage disequilibrium produced by genetic drift in Drosophila populations

1986 ◽  
Vol 48 (3) ◽  
pp. 161-166 ◽  
Author(s):  
Catherine Montchamp-Moreau ◽  
Mariano Katz
Keyword(s):  
Linkage Disequilibrium ◽  
Genetic Drift ◽  
Statistical Tests ◽  
Burst Size ◽  
Natural Populations ◽  
Finite Size ◽  
Gene Frequencies ◽  
Accurate Knowledge ◽  
Maximum Value ◽  
Cyclical Fluctuations

SummaryWe analyse the progression of linkage disequilibrium produced by random genetic drift in populations subject to cyclical fluctuations in size. Our model is applied to natural populations of Drosophila which show an annual demographic cycle of bottleneck (finite size) and demographic burst (size supposed to be infinite). In these populations, linkage disequilibrium stabilizes in such a way that, at equilibrium, the expected square of the correlation of gene frequencies E(r2) shows a stable cycle from year to year. If two loci are tightly linked, E(r2) barely varies during the annual cycle. Its values remain close to the value expected in a population of the same but constant effective size. If two loci are loosely linked, fluctuations in E(r2) are large. The maximum value, reached at the end of the bottleneck, is 10 to 100 times greater than the value obtained at the end of the burst. Our results show that the interpretation of observed linkage disequilibrium, by means of statistical tests, requires an accurate knowledge of population demography.

scholarly journals Uncorrelated genetic drift of gene frequencies and linkage disequilibrium in some models of linked overdominant polymorphisms

1974 ◽  
Vol 24 (3) ◽  
pp. 281-294 ◽  
Author(s):  
Joseph Felsenstein
Keyword(s):  
Linkage Disequilibrium ◽  
Covariance Matrix ◽  
Genetic Drift ◽  
Conditional Distribution ◽  
Large Population ◽  
Multivariate Normal ◽  
Gene Frequencies ◽  
Constant Variance ◽  
Population Sizes ◽  
Multiplicative Family

SUMMARYFor large population sizes, gene frequencies p and q at two linked over-dominant loci and the linkage disequilibrium parameter D will remain close to their equilibrium values. We can treat selection and recombination as approximately linear forces on p, q and D, and we can treat genetic drift as a multivariate normal perturbation with constant variance-covariance matrix. For the additive-multiplicative family of two-locus models, p, q and D are shown to be (approximately) uncorrelated. Expressions for their variances are obtained. When selection coefficients are small the variances of p and q are those previously given by Robertson for a single locus. For small recombination fractions the variance of D is that obtained for neutral loci by Ohta & Kimura. For larger recombination fractions the result differs from theirs, so that for unlinked loci r2 ≃ 2/(3N) instead of 1/(2N). For the Lewontin-Kojima and Bodmer symmetric viability models, and for a model symmetric at only one of the loci, a more exact argument is possible. In the asymptotic conditional distribution in these cases, various of p, q and D are uncorrelated, depending on the type of symmetiy in the model.

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