scholarly journals New environment, new invaders - repeated horizontal transfer of LINEs to sea snakes

2020 ◽  
Author(s):  
James D. Galbraith ◽  
Alastair J. Ludington ◽  
Alexander Suh ◽  
Kate L. Sanders ◽  
David L. Adelson

AbstractWhile numerous studies have found horizontal transposon transfer (HTT) to be widespread across metazoans, few have focused on HTT in marine ecosystems. To investigate potential recent HTTs into marine species we searched for novel repetitive elements in sea snakes, a group of elapids which transitioned to a marine habitat at most 18 Mya. Our analysis uncovered repeated HTTs into sea snakes following their marine transition. Such major shifts in habitat should require significant genomic changes.The seven subfamilies of horizontally transferred LINE retrotransposons we identified in the olive sea snake (Aipysurus laevis) are transcribed, and hence are likely still active and expanding across the genome. A search of 600 metazoan genomes found all seven were absent from other amniotes, including terrestrial elapids, with the most similar transposons present in fish and marine invertebrates. The one exception was a similar transposon found in sea kraits, a lineage of amphibious elapids which independently transitioned to a marine environment following their divergence from terrestrial species 25 Mya. Our finding of repeated horizontal transfer events into separate lineages of marine snakes greatly expands past findings of frequent horizontal transfer in the marine environment, suggesting it is ideal for the transfer of transposons.Transposons are drivers of evolution as sources of genomic sequence and hence genomic novelty. This provides evidence of the environment influencing evolution of metazoans not only through specific selection pressures, but also by contributing novel genomic material.

2020 ◽  
Vol 12 (12) ◽  
pp. 2370-2383 ◽  
Author(s):  
James D. Galbraith ◽  
Alastair J. Ludington ◽  
Alexander Suh ◽  
Kate L. Sanders ◽  
David L. Adelson

Abstract Although numerous studies have found horizontal transposon transfer (HTT) to be widespread across metazoans, few have focused on HTT in marine ecosystems. To investigate potential recent HTTs into marine species, we searched for novel repetitive elements in sea snakes, a group of elapids which transitioned to a marine habitat at most 18 Ma. Our analysis uncovered repeated HTTs into sea snakes following their marine transition. The seven subfamilies of horizontally transferred LINE retrotransposons we identified in the olive sea snake (Aipysurus laevis) are transcribed, and hence are likely still active and expanding across the genome. A search of 600 metazoan genomes found all seven were absent from other amniotes, including terrestrial elapids, with the most similar LINEs present in fish and marine invertebrates. The one exception was a similar LINE found in sea kraits, a lineage of amphibious elapids which independently transitioned to a marine environment 25 Ma. Our finding of repeated horizontal transfer events into marine snakes greatly expands past findings that the marine environment promotes the transfer of transposons. Transposons are drivers of evolution as sources of genomic sequence and hence genomic novelty. We identified 13 candidate genes for HTT-induced adaptive change based on internal or neighboring HTT LINE insertions. One of these, ADCY4, is of particular interest as a part of the KEGG adaptation pathway “Circadian Entrainment.” This provides evidence of the ecological interactions between species influencing evolution of metazoans not only through specific selection pressures, but also by contributing novel genomic material.


Toxins ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 548
Author(s):  
Hong-Yan Zhao ◽  
Yan Sun ◽  
Yu Du ◽  
Jia-Qi Li ◽  
Jin-Geng Lv ◽  
...  

Given that the venom system in sea snakes has a role in enhancing their secondary adaption to the marine environment, it follows that elucidating the diversity and function of venom toxins will help to understand the adaptive radiation of sea snakes. We performed proteomic and de novo NGS analyses to explore the diversity of venom toxins in the annulated sea snake (Hydrophis cyanocinctus) and estimated the adaptive molecular evolution of the toxin-coding unigenes and the toxicity of the major components. We found three-finger toxins (3-FTxs), phospholipase A2 (PLA2) and cysteine-rich secretory protein (CRISP) in the venom proteome and 59 toxin-coding unigenes belonging to 24 protein families in the venom-gland transcriptome; 3-FTx and PLA2 were the most abundant families. Nearly half of the toxin-coding unigenes had undergone positive selection. The short- (i.p. 0.09 μg/g) and long-chain neurotoxin (i.p. 0.14 μg/g) presented fairly high toxicity, whereas both basic and acidic PLA2s expressed low toxicity. The toxicity of H. cyanocinctus venom was largely determined by the 3-FTxs. Our data show the venom is used by H. cyanocinctus as a biochemically simple but genetically complex weapon and venom evolution in H. cyanocinctus is presumably driven by natural selection to deal with fast-moving prey and enemies in the marine environment.


2020 ◽  
Vol 8 (9) ◽  
pp. 661
Author(s):  
Davide Asnicar ◽  
Costanza Cappelli ◽  
Ahmad Safuan Sallehuddin ◽  
Nur Atiqah Maznan ◽  
Maria Gabriella Marin

Despite the widespread use of herbicide glyphosate in cultivation, its extensive runoff into rivers and to coastal areas, and the persistence of this chemical and its main degradation product (aminomethylphosphonic acid, AMPA) in the environment, there is still little information on the potential negative effects of glyphosate, its commercial formulation Roundup® and AMPA on marine species. This study was conducted with the aim of providing a comparative evaluation of the effects of glyphosate-based and its derived chemicals on the larval development of the sea urchin Paracentrotus lividus, thus providing new data to describe the potential ecotoxicity of these contaminants. In particular, the effects on larval development, growth and metabolism were assessed during 48 h of exposure from the time of egg fertilization. The results confirm that AMPA and its parent compound, glyphosate have similar toxicity, as observed in other marine invertebrates. However, interestingly, the Roundup® formulation seemed to be less toxic than the glyphosate alone.


2018 ◽  
Vol 35 ◽  
pp. 1-5
Author(s):  
Adriana P. Rebolledo ◽  
Rachel Collin

. Although larval stages are often considered particularly vulnerable to stressors, for many marine invertebrates studies of thermal tolerance have focused on adults. Here we determined the upper thermal limit (LT50) of the zoea I of four Caribbean crab species (Macrocoelomatrispinosum, Aratuspisonii, Armasesricordi, and Minucarapax) and compared their thermal tolerance over time and among species. The zoea from the subtidal species M.trispinosum and tree climbing mangrove species A.pisonii had a lower thermal tolerance, 35 and 38.5 °C respectively, than did the semiterrestrial A.ricordi and M.rapax. In all four species tested, the estimates of thermal tolerance depend on the duration of exposure to elevated temperatures. Longer exposures to thermal stress produce lower estimates of LT50, which decreased by ~1 °C from a two- to a six-hour exposure. Crab embryos develop on the abdomen of the mother until the larvae are ready to hatch. Therefore, the thermal tolerances of the embryos which need to coincide with the environmental conditions experienced by the adult stage, may carry over into the early zoea stage. Our results suggest that semiterrestrial species, in which embryos may need to withstand higher temperatures than embryos of subtidal species also produce larvae with higher thermal tolerances. Over the short term, the larvae of these tropical crab species can withstand significantly higher temperatures than those experienced in their marine habitat. Longer term rearing studies are necessary to determine the temperature at which chronic exposure has a negative impact on embryonic and larval survival.


Author(s):  
Guangyi Fan ◽  
Jianwei Chen ◽  
Tao Jin ◽  
Chengcheng Shi ◽  
Xiao Du ◽  
...  

With the continuing development of sequencing technology, genomics has been applied in a variety of biological research areas. In particular, the application of genomics to marine species, which boast a high diversity, promises great scientific and industrial potential. Significant progress has been made in marine genomics especially over the past few years. Consequently, BGI, leveraging its prominent contributions in genomics research, established BGI-Qingdao, an institute specifically aimed at exploring marine genomics. In order to accelerate marine genomics research and related applications, BGI-Qingdao initiated the International Conference on Genomics of the Ocean (ICG-Ocean) to develop international collaborations and establish a focused and coherent global research plan. Last year, the first ICG-Ocean conference was held in Qingdao, China, during which 47 scientists in marine genomics from all over the world reported on their research progress to an audience of about 300 attendees. This year, we would like to build on that success, drafting a report on marine genomics to draw global attention to marine genomics. We summarized the recent progress, proposed future directions, and we would like to enable additional profound insights on marine genomics. Similar to the annual report on plant and fungal research by Kew Gardens, and the White Paper of ethical issues on experimental animals, we hope our first report on marine genomics can provide some useful insights for researchers, funding agencies as well as industry, and that future versions will expand upon the foundation established here in both breadth and depth of knowledge.This report summarizes the recent progress in marine genomics in six parts including: marine microorganisms, marine fungi, marine algae and plants, marine invertebrates, marine vertebrates and genomics-based applications.


1994 ◽  
Vol 45 (3) ◽  
pp. 429 ◽  
Author(s):  
TJ Wassenberg ◽  
JP Salini ◽  
H Heatwole ◽  
JD Kerr

Sea-snakes were collected from research trawlers and commercial prawn trawlers in the Gulf of Carpentaria during the period from April 1976 to December 1991. The data were analysed on the basis of CPUE (catch per unit effort) for depth, latitude and season. The research trawlers, operating in the eastern Gulf of Carpentaria, and the commercial prawn trawlers, operating in the south-western Gulf of Carpentaria, caught sea-snakes at a rate of 0.028 and 0.026 sea-snakes per metre of headrope length per hour, respectively. Lapemis hardwickii was the sea-snake most commonly caught by the research trawlers-53% of all snakes-and Hydrophis elegans was the sea-snake most commonly caught by commercial trawlers-25% of all snakes. Depth was the most significant factor affecting CPUE, with more than 70% of all sea-snakes being caught in waters less than 15 m deep. When catches of all species were combined, a significant interaction (P<0.05) existed between depth and season. L. hardwickii specimens were caught more frequently in shallow coastal waters (< 15 m deep) in spring but in deeper water further offshore in autumn. A significant interaction between latitude and depth was found for Astrotia stokesii; specimens were caught more frequently in deeper water at 14% Enhydrina schistosa is generally coastal, with 8800 of specimens being caught in water less than 10 m deep. Seasonal movement of sea-snakes between inshore and offshore waters may be linked to their breeding cycles. The estimated number of sea-snakes captured in the Gulf of Carpentaria for the 1991 prawning season ranged from 73 583 to 165 559, with a mean of 119 571. The survival rate of sea-snakes from commercial prawn trawls was about 60% and hence between 29 801 and 67 051 sea-snakes are estimated to have died.


Zootaxa ◽  
2012 ◽  
Vol 3201 (1) ◽  
pp. 45 ◽  
Author(s):  
KANISHKA D.B. UKUWELA ◽  
KATE L. SANDERS ◽  
BRYAN G. FRY

A new species of viviparous sea snake, Hydrophis donaldi sp. nov. (Hydrophiinae), is described from the Gulf of Carpen-taria, northern Australia. Molecular analyses reveal this species as a deeply divergent lineage within the Hydrophis sub-group, and separate it from all other sampled taxa by fixed nucleotide substitutions at three independent mitochondrial andnuclear loci. The new species is assigned to Hydrophis based on the current morphological diagnosis of this large but pa-raphyletic genus, and is distinguished from all other Hydrophis species and closely allied genera by a combination of mor-phological characters relating to scalation, colour pattern and osteology. Using current keys for sea snakes, H. donaldi sp.nov. might be mistaken for H. coggeri, H. sibauensis or H. torquatus diadema but it is readily distinguished from thesespecies by a higher number of bands on the body and tail, lower ventral count, strongly spinous body scales, and a wider,more rounded head. Sea snakes have been sampled intensively in the Gulf of Carpentaria due to their vulnerability to by-catch in the region’s commercial prawn-trawl fisheries. That this highly distinctive new species has evaded discovery inthe region until now is surprising, but might be explained by its habitat preferences. All known specimens of H. donaldi sp. nov. were found in estuarine habitats that are relatively poorly surveyed and are not targeted by commercial fisheries.


2010 ◽  
Vol 20 (supp01) ◽  
pp. 1511-1532 ◽  
Author(s):  
S. POMPEI ◽  
E. CAGLIOTI ◽  
V. LORETO ◽  
F. TRIA

Phylogenetic methods have recently been rediscovered in several interesting areas among which immunodynamics, epidemiology and many branches of evolutionary dynamics. In many interesting cases the reconstruction of a correct phylogeny is blurred by high mutation rates and/or horizontal transfer events. As a consequence, a divergence arises between the true evolutionary distances and the distances between pairs of taxa as inferred from the available data, making the phylogenetic reconstruction a challenging problem. Mathematically this divergence translates in the non-additivity of the actual distances between taxa and the quest for new algorithms able to efficiently cope with these effects is wide open. In distance-based reconstruction methods, two properties of additive distances were extensively exploited as antagonist criteria to drive phylogeny reconstruction: on the one hand a local property of quartets, i.e. sets of four taxa in a tree, the four-point condition; on the other hand, a recently proposed formula that allows to write the tree length as a function of the distances between taxa, the Pauplin's formula. A deeper comprehension of the effects of the non-additivity on the inspiring principles of the existing reconstruction algorithms is thus of paramount importance. In this paper we present a comparative analysis of the performances of the most important distance-based phylogenetic algorithms. We focus in particular on the dependence of their performances on two main sources of non-additivity: back-mutation processes and horizontal transfer processes. The comparison is carried out in the framework of a set of generative algorithms for phylogenies that incorporate non-additivity in a tunable way.


2000 ◽  
Vol 14 (3) ◽  
pp. 327 ◽  
Author(s):  
Nils Møller Andersen ◽  
Tom A. Weir

Semiaquatic bugs (Heteroptera, infraorder Gerromorpha) are distributed worldwide with approximately 1,600 described species. Most species live in various types of freshwater habitats, but a little more than 10% have colonised the marine environment. The Australian fauna constitutes a significantly higher percentage of marine species (about 25%) than in any other continent. Among these are the coral treaders, Hermatobates Carpenter, belonging to the Hermatobatidae, one of very few insect families that only include marine species. In this paper the two species of Hermatobates previously known from Australia are redescribed and H. armatus, sp. nov. from the Chesterfield Islands in the Coral Sea is added. The distribution of species known from Australia and New Caledonia is mapped, and a revised key to the eight species currently recognised in the genus is presented. Finally, the available knowledge about the biology and ecology of coral treaders is reviewed and discussed.


2019 ◽  
Vol 6 (9) ◽  
pp. 191099 ◽  
Author(s):  
Alessandro Palci ◽  
Roger S. Seymour ◽  
Cao Van Nguyen ◽  
Mark N. Hutchinson ◽  
Michael S. Y. Lee ◽  
...  

Novel phenotypes are often linked to major ecological transitions during evolution. Here, we describe for the first time an unusual network of large blood vessels in the head of the sea snake Hydrophis cyanocinctus . MicroCT imaging and histology reveal an intricate modified cephalic vascular network (MCVN) that underlies a broad area of skin between the snout and the roof of the head. It is mostly composed of large veins and sinuses and converges posterodorsally into a large vein (sometimes paired) that penetrates the skull through the parietal bone. Endocranially, this blood vessel leads into the dorsal cerebral sinus, and from there, a pair of large veins depart ventrally to enter the brain. We compare the condition observed in H. cyanocinctus with that of other elapids and discuss the possible functions of this unusual vascular network. Sea snakes have low oxygen partial pressure in their arterial blood that facilitates cutaneous respiration, potentially limiting the availability of oxygen to the brain. We conclude that this novel vascular structure draining directly to the brain is a further elaboration of the sea snakes' cutaneous respiratory anatomy, the most likely function of which is to provide the brain with an additional supply of oxygen.


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