scholarly journals Propagating patterns of intrinsic activity along macroscale gradients coordinate functional connections across the whole brain

2020 ◽  
Author(s):  
Behnaz Yousefi ◽  
Shella Keilholz
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Spatial Organization ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Intrinsic Activity ◽  
Resting State Networks ◽  
Whole Brain ◽  
Functional Connections ◽  
Driving Mechanisms

The intrinsic activity of the human brain, observed with resting-state fMRI (rsfMRI) and functional connectivity, exhibits macroscale spatial organization such as resting-state networks (RSNs) and functional connectivity gradients (FCGs). Dynamic analysis techniques have shown that the time-averaged maps captured by functional connectivity are mere summaries of time-varying patterns with distinct spatial and temporal characteristics. A better understanding of these patterns might provide insight into aspects of the brain intrinsic activity that cannot be inferred by functional connectivity, RSNs or FCGs. Here, we describe three spatiotemporal patterns of coordinated activity across the whole brain obtained by averaging similar ~20-second-long segments of rsfMRI timeseries. In each of these patterns, activity propagates along a particular macroscale FCG, simultaneously across the cortical sheet and in most other brain regions. In some areas, like the thalamus, the propagation suggests previously-undescribed FCGs. The coordinated activity across areas is consistent with known tract-based connections, and nuanced differences in the timing of peak activity between brain regions point to plausible driving mechanisms. The magnitude of correlation within and particularly between RSNs is remarkably diminished when these patterns are regressed from the rsfMRI timeseries, a quantitative demonstration of their significant role in functional connectivity. Taken together, our results suggest that a few recurring patterns of propagating intrinsic activity along macroscale gradients give rise to and coordinate functional connections across the whole brain.

scholarly journals Characterizations of resting-state modulatory interactions in the human brain

2015 ◽  
Vol 114 (5) ◽  
pp. 2785-2796 ◽  
Author(s):  
Xin Di (邸新) ◽  
Bharat B. Biswal
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Large Scale ◽  
Interaction Analysis ◽  
Region Of Interest ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Processing Efficiency ◽  
Whole Brain ◽  
Positive Effects

Functional connectivity between two brain regions, measured using functional MRI (fMRI), has been shown to be modulated by other regions even in a resting state, i.e., without performing specific tasks. We aimed to characterize large-scale modulatory interactions by performing region-of-interest (ROI)-based physiophysiological interaction analysis on resting-state fMRI data. Modulatory interactions were calculated for every possible combination of three ROIs among 160 ROIs sampling the whole brain. Firstly, among all of the significant modulatory interactions, there were considerably more negative than positive effects; i.e., in more cases, an increase of activity in one region was associated with decreased functional connectivity between two other regions. Next, modulatory interactions were categorized as to whether the three ROIs were from one single network module, two modules, or three different modules (defined by a modularity analysis on their functional connectivity). Positive modulatory interactions were more represented than expected in cases in which the three ROIs were from a single module, suggesting an increase within module processing efficiency through positive modulatory interactions. In contrast, negative modulatory interactions were more represented than expected in cases in which the three ROIs were from two modules, suggesting a tendency of between-module segregation through negative modulatory interactions. Regions that were more likely to have modulatory interactions were then identified. The numbers of significant modulatory interactions for different regions were correlated with the regions' connectivity strengths and connection degrees. These results demonstrate whole-brain characteristics of modulatory interactions and may provide guidance for future studies of connectivity dynamics in both resting state and task state.

scholarly journals Exploring Anti-correlated Resting State BOLD Signals Through Dynamic Functional Connectivity and Whole-brain Computational Modeling

2016 ◽  
Author(s):  
Murat Demirtaş ◽  
Matthieu Gilson ◽  
John D. Murray ◽  
Dina Popovic ◽  
Eduard Vieta ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Computational Modeling ◽  
Resting State ◽  
Brain Connectivity ◽  
Brain Regions ◽  
Hemodynamic Response Function ◽  
Dynamic Functional Connectivity ◽  
Whole Brain ◽  
Global Average ◽  
Functional Connections

AbstractResting-state functional magnetic resonance imaging and diffusion weight imaging became a conventional tool to study brain connectivity in healthy and diseased individuals. However, both techniques provide indirect measures of brain connectivity leading to controversies on their interpretation. Among these controversies, interpretation of anti-correlated functional connections and global average signal is a major challenge for the field. In this paper, we used dynamic functional connectivity to calculate the probability of anti-correlations between brain regions. The brain regions forming task-positive and task-negative networks showed high anti-correlation probabilities. The fluctuations in anti-correlation probabilities were significantly correlated with those in global average signal and functional connectivity. We investigated the mechanisms behind these fluctuations using whole-brain computational modeling approach. We found that the underlying effective connectivity and intrinsic noise reflect the static spatiotemporal patterns, whereas the hemodynamic response function is the key factor defining the fluctuations in functional connectivity and anti-correlations. Furthermore, we illustrated the clinical implications of these findings on a group of bipolar disorder patients suffering a depressive relapse (BPD).

scholarly journals Local GABA concentration is related to network-level resting functional connectivity

eLife ◽  
2014 ◽  
Vol 3 ◽  
Author(s):  
Charlotte J Stagg ◽  
Velicia Bachtiar ◽  
Ugwechi Amadi ◽  
Christel A Gudberg ◽  
Andrei S Ilie ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Primary Motor Cortex ◽  
Empirical Studies ◽  
Network Connectivity ◽  
Resting State Fmri ◽  
Resonance Spectroscopy ◽  
Resting State Networks ◽  
Inhibitory Neurotransmitter ◽  
Motor Network

Anatomically plausible networks of functionally inter-connected regions have been reliably demonstrated at rest, although the neurochemical basis of these ‘resting state networks’ is not well understood. In this study, we combined magnetic resonance spectroscopy (MRS) and resting state fMRI and demonstrated an inverse relationship between levels of the inhibitory neurotransmitter GABA within the primary motor cortex (M1) and the strength of functional connectivity across the resting motor network. This relationship was both neurochemically and anatomically specific. We then went on to show that anodal transcranial direct current stimulation (tDCS), an intervention previously shown to decrease GABA levels within M1, increased resting motor network connectivity. We therefore suggest that network-level functional connectivity within the motor system is related to the degree of inhibition in M1, a major node within the motor network, a finding in line with converging evidence from both simulation and empirical studies.

scholarly journals The effect of global signal regression on DCM estimates of noise and effective connectivity from resting state fMRI

2019 ◽  
Author(s):  
Hannes Almgren ◽  
Frederik Van de Steen ◽  
Adeel Razi ◽  
Karl Friston ◽  
Daniele Marinazzo
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Effective Connectivity ◽  
Network Connectivity ◽  
Resting State Fmri ◽  
Measurement Noise ◽  
Resting State Networks ◽  
Cross Sectional ◽  
Global Signal ◽  
Leibler Divergence

AbstractThe influence of the global BOLD signal on resting state functional connectivity in fMRI data remains a topic of debate, with little consensus. In this study, we assessed the effects of global signal regression (GSR) on effective connectivity within and between resting-state networks – as estimated with dynamic causal modelling (DCM) for resting state fMRI (rsfMRI). DCM incorporates a forward (generative) model that quantifies the contribution of different types of noise (including global measurement noise), effective connectivity, and (neuro)vascular processes to functional connectivity measurements. DCM analyses were applied to two different designs; namely, longitudinal and cross-sectional designs. In the modelling of longitudinal designs, we included four extensive longitudinal resting state fMRI datasets with a total number of 20 subjects. In the analysis of cross-sectional designs, we used rsfMRI data from 361 subjects from the Human Connectome Project. We hypothesized that (1) GSR would have no discernible impact on effective connectivity estimated with DCM, and (2) GSR would be reflected in the parameters representing global measurement noise. Additionally, we performed comparative analyses of the informative value of data with and without GSR. Our results showed negligible to small effects of GSR on connectivity within small (separately estimated) RSNs. For between-network connectivity, we found two important effects: the effect of GSR on between-network connectivity (averaged over all connections) was negligible to small, while the effect of GSR on individual connections was non-negligible. Contrary to our expectations, we found either no effect (in the longitudinal designs) or a non-specific (cross-sectional design) effect of GSR on parameters representing (global) measurement noise. Data without GSR were found to be more informative than data with GSR; however, in small resting state networks the precision of posterior estimates was greater using data after GSR. In conclusion, GSR is a minor concern in DCM studies; however, individual between-network connections (as opposed to average between-network connectivity) and noise parameters should be interpreted quantitatively with some caution. The Kullback-Leibler divergence of the posterior from the prior, together with the precision of posterior estimates, might offer a useful measure to assess the appropriateness of GSR, when nuancing data features in resting state fMRI.

scholarly journals Effects of long-term cocaine self-administration on brain resting-state functional connectivity in nonhuman primates

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Stephen J. Kohut ◽  
Dionyssios Mintzopoulos ◽  
Brian D. Kangas ◽  
Hannah Shields ◽  
Kelly Brown ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Cognitive Processing ◽  
Resting State ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Anterior Cingulate ◽  
Resting State Functional Connectivity ◽  
Self Administration ◽  
Chronic Cocaine

AbstractLong-term cocaine use is associated with a variety of neural and behavioral deficits that impact daily function. This study was conducted to examine the effects of chronic cocaine self-administration on resting-state functional connectivity of the dorsal anterior cingulate (dACC) and putamen—two brain regions involved in cognitive function and motoric behavior—identified in a whole brain analysis. Six adult male squirrel monkeys self-administered cocaine (0.32 mg/kg/inj) over 140 sessions. Six additional monkeys that had not received any drug treatment for ~1.5 years served as drug-free controls. Resting-state fMRI imaging sessions at 9.4 Tesla were conducted under isoflurane anesthesia. Functional connectivity maps were derived using seed regions placed in the left dACC or putamen. Results show that cocaine maintained robust self-administration with an average total intake of 367 mg/kg (range: 299–424 mg/kg). In the cocaine group, functional connectivity between the dACC seed and regions primarily involved in motoric behavior was weaker, whereas connectivity between the dACC seed and areas implicated in reward and cognitive processing was stronger. In the putamen seed, weaker widespread connectivity was found between the putamen and other motor regions as well as with prefrontal areas that regulate higher-order executive function; stronger connectivity was found with reward-related regions. dACC connectivity was associated with total cocaine intake. These data indicate that functional connectivity between regions involved in motor, reward, and cognitive processing differed between subjects with recent histories of cocaine self-administration and controls; in dACC, connectivity appears to be related to cumulative cocaine dosage during chronic exposure.

scholarly journals Altered Intra- and Interregional Synchronization in Resting-State Cerebral Networks Associated with Chronic Tinnitus

2015 ◽  
Vol 2015 ◽  
pp. 1-11 ◽  
Author(s):  
Yu-Chen Chen ◽  
Jian Zhang ◽  
Xiao-Wei Li ◽  
Wenqing Xia ◽  
Xu Feng ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Brain Activity ◽  
Inferior Frontal Gyrus ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Chronic Tinnitus ◽  
Healthy Controls ◽  
Tinnitus Distress ◽  
The Right

Objective. Subjective tinnitus is hypothesized to arise from aberrant neural activity; however, its neural bases are poorly understood. To identify aberrant neural networks involved in chronic tinnitus, we compared the resting-state functional magnetic resonance imaging (fMRI) patterns of tinnitus patients and healthy controls.Materials and Methods. Resting-state fMRI measurements were obtained from a group of chronic tinnitus patients (n=29) with normal hearing and well-matched healthy controls (n=30). Regional homogeneity (ReHo) analysis and functional connectivity analysis were used to identify abnormal brain activity; these abnormalities were compared to tinnitus distress.Results. Relative to healthy controls, tinnitus patients had significant greater ReHo values in several brain regions including the bilateral anterior insula (AI), left inferior frontal gyrus, and right supramarginal gyrus. Furthermore, the left AI showed enhanced functional connectivity with the left middle frontal gyrus (MFG), while the right AI had enhanced functional connectivity with the right MFG; these measures were positively correlated with Tinnitus Handicap Questionnaires (r=0.459,P=0.012andr=0.479,P=0.009, resp.).Conclusions. Chronic tinnitus patients showed abnormal intra- and interregional synchronization in several resting-state cerebral networks; these abnormalities were correlated with clinical tinnitus distress. These results suggest that tinnitus distress is exacerbated by attention networks that focus on internally generated phantom sounds.

scholarly journals Dynamic Expression of Brain Functional Systems Disclosed by Fine-Scale Analysis of Edge Time Series

2020 ◽  
Author(s):  
Olaf Sporns ◽  
Joshua Faskowitz ◽  
Andreia Sofia Teixera ◽  
Richard F. Betzel
Keyword(s):  
Time Series ◽  
Functional Connectivity ◽  
Resting State ◽  
Pearson Correlation ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Statistical Dependence ◽  
Fine Scale ◽  
Time Step ◽  
Functional Systems

AbstractFunctional connectivity (FC) describes the statistical dependence between brain regions in resting-state fMRI studies and is usually estimated as the Pearson correlation of time courses. Clustering reveals densely coupled sets of regions constituting a set of resting-state networks or functional systems. These systems manifest most clearly when FC is sampled over longer epochs lasting many minutes but appear to fluctuate on shorter time scales. Here, we propose a new approach to track these temporal fluctuations. Un-wrapping FC signal correlations yields pairwise co-fluctuation time series, one for each node pair/edge, and reveals fine-scale dynamics across the network. Co-fluctuations partition the network, at each time step, into exactly two communities. Sampled over time, the overlay of these bipartitions, a binary decomposition of the original time series, very closely approximates functional connectivity. Bipartitions exhibit characteristic spatiotemporal patterns that are reproducible across participants and imaging sessions and disclose fine-scale profiles of the time-varying levels of expression of functional systems. Our findings document that functional systems appear transiently and intermittently, and that FC results from the overlay of many variable instances of system expression. Potential applications of this decomposition of functional connectivity into a set of binary patterns are discussed.

scholarly journals Resting-state functional connectivity of social brain regions predicts motivated dishonesty

2021 ◽  
Author(s):  
Luoyao Pang ◽  
Huidi Li ◽  
Quanying Liu ◽  
Yue-jia Luo ◽  
Dean Mobbs ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Region Of Interest ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Resting State Functional Connectivity ◽  
Social Brain ◽  
Moral Regulation ◽  
Interpretable Model ◽  
Reward Valuation

Motivated dishonesty is a typical social behavior varying from person to person. Resting-state fMRI (rsfMRI) is capable of identifying unique patterns from functional connectivity (FC) between brain networks. To identify the relevant neural patterns and build an interpretable model to predict dishonesty, we scanned 8-min rsfMRI before an information-passing task. In the task, we employed monetary rewards to induce dishonesty. We applied both connectome-based predictive modeling (CPM) and region-of-interest (ROI) analysis to examine the association between FC and dishonesty. CPM indicated that the stronger FC between fronto-parietal and default mode networks can predict a higher dishonesty rate. The ROIs were set in the regions involving four cognitive processes (self-reference, cognitive control, reward valuation, and moral regulation). The ROI analyses showed that a stronger FC between these regions and the prefrontal cortex can predict a higher dishonesty rate. Our study offers an integrated model to predict dishonesty with rsfMRI, and the results suggest that the frequent motivated dishonest behavior may require a higher engagement of social brain regions.

scholarly journals Directed functional connectivity using dynamic graphical models

2017 ◽  
Author(s):  
Simon Schwab ◽  
Ruth Harbord ◽  
Valerio Zerbi ◽  
Lloyd Elliott ◽  
Soroosh Afyouni ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Graphical Models ◽  
Resting State ◽  
Graphical Model ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Reciprocal Relationship ◽  
Validity And Reliability ◽  
Varying Coefficients ◽  
Time Varying Coefficients

AbstractThere are a growing number of neuroimaging methods that model spatio-temporal patterns of brain activity to allow more meaningful characterizations of brain networks. This paper proposes dynamic graphical models (DGMs) for dynamic, directed functional connectivity. DGMs are a multivariate graphical model with time-varying coefficients that describe instantaneous directed relationships between nodes. A further benefit of DGMs is that networks may contain loops and that large networks can be estimated. We use network simulations, human resting-state fMRI (N = 500) to investigate the validity and reliability of the estimated networks. We simulate systematic lags of the hemodynamic response at different brain regions to investigate how these lags potentially bias directionality estimates. In the presence of such lag confounds (0.4–0.8 seconds offset between connected nodes), our method has a sensitivity of 72%–77% to detect the true direction. Stronger lag confounds have reduced sensitivity, but do not increase false positives (i.e., directionality estimates of the opposite direction). In human resting-state fMRI, we find the DMN has consistent influence on the cerebellar, the limbic and the auditory/temporal network, as well a consistent reciprocal relationship between the visual medial and visual lateral network. Finally, we apply the method in a small mouse fMRI sample and discover a highly plausible relationship between areas in the hippocampus feeding into the cingulate cortex. We provide a computationally efficient implementation of DGM as a free software package for R.

Sign in / Sign up

Export Citation Format

Share Document