scholarly journals Multi-trait and multi-environment Bayesian analysis to predict the G x E interaction in flood-irrigated rice

2021 ◽  
Author(s):  
Antônio Carlos da Silva Júnior ◽  
Isabela de Castro Sant’Anna ◽  
Michele Jorge Silva ◽  
Cosme Damião Cruz ◽  
Camila Ferreira Azevedo ◽  
...  
Keyword(s):  
Bayesian Model ◽  
Genetic Parameters ◽  
Block Design ◽  
Genetic Parameter ◽  
Monte Carlo Algorithm ◽  
Reliable Estimate ◽  
Irrigated Rice ◽  
Biotic Stresses ◽  
Randomized Block Design ◽  
Rice Genotypes

The biggest challenge for the reproduction of flood-irrigated rice is to identify superior genotypes that present development of high-yielding varieties with specific grain qualities, resistance to abiotic and biotic stresses in addition to superior adaptation to the target environment.Thus, the objectives of this study were to propose a multi-trait and multi-environment Bayesian model to estimate genetic parameters for the flood-irrigated rice crop. To this end, twenty-five rice genotypes belonging to the flood-irrigated rice breeding program were evaluated. Grain yield and flowering were evaluated in the agricultural year 2017/2018. The experimental design used in all experiments was a randomized block design with three replications. The Markov Chain Monte Carlo algorithm was used to estimate genetic parameters and genetic values. The flowering is highly heritable by the Bayesian credibility interval: [[EQUATION]] = 0.039- 0.80, and 0.02- 0.91, environment 1 and 2, respectively. The genetic correlation between traits was significantly different from zero in the two environments (environment 1: -0.80 to 0.74; environment 2: -0.82 to 0.86. The relationship of [[EQUATION]] and [[EQUATION]] higher for flowering in the reduced model ( [[EQUATION]] = 5.83 and 13.98, environments 1 and 2, respectively). For the complete model, this trait presented an estimate of the relative variation index of: [[EQUATION]] = 4.28 and 4.21, environments 1 and 2, respectively. In summary, the multi-trait and multi-environment Bayesian model allowed a reliable estimate of the genetic parameter of flood-irrigated rice. Bayesian analyzes provide robust inference of genetic parameters. Therefore, we recommend this model for genetic evaluation of flood-irrigated rice genotypes, and their generalization, in other crops. Precise estimates of genetic parameters bring new perspectives on the application of Bayesian methods to solve modeling problems in the genetic improvement of flood-irrigated rice.

scholarly journals FEASIBILITY OF EARLY Pinus taeda L. SELECTION TO ASSESS GROWTH VARIABLES IN PROGENY TEST

FLORESTA ◽  
2021 ◽  
Vol 51 (4) ◽  
pp. 937
Author(s):  
Paulo César Flôres Júnior ◽  
Vanessa Ishibashi ◽  
Jorge Luis Monteiro de Matos ◽  
Diego Tyszka Martinez ◽  
Antonio Rioyei Higa
Keyword(s):  
Genetic Correlation ◽  
Genetic Parameters ◽  
Block Design ◽  
Genetic Parameter ◽  
Genetic Correlations ◽  
Critical Factor ◽  
Early Selection ◽  
Parameter Estimates ◽  
Randomized Block Design ◽  
Adult Plants

Forest species breeding programs require a long period-of-time for plants to reach the proper age to enable selecting superior genotypes, which is a critical factor in selection processes. Thus, the aims of the current study are to estimate genetic parameters in juvenile and adult plants (6, 10 and 20 years) in order to investigate genetic correlations between variables at different ages and at certain ages; as well as to determine whether it is possible performing efficient early selection in juvenile plants. The test was implemented in 1997; it comprised 120 progenies and followed a randomized block design, with five repetitions - linear plots comprised 5 plants at 2.5 m x 2.5 m spacing. DBH (cm), H (m) and VOL (m³) of all tested subjects were measured at the age of 6, 10 and 20 years. Variance components, genetic parameters, as well as genetic correlations between variables and between ages were estimated in Selegen REML/BLUP® software. Genetic parameter estimates have shown superiority at 10 years, in comparison to that estimated at 6 and 20 years. Variable ‘DBH’ has shown high genetic correlation to height (H) and volume (VOL), whereas DBH x VOL have shown high genetic correlation (0.98) in 10-year-old plants. With respect to genetic correlation between ages, 10-year-old plants have shown moderate correlation to 6- and 20-year-old plants. Early selection is indicated for 10-year-old plants, in 20-year cycles, since plants at this age have shown higher selection efficiency to predict gains in comparison to adult plants.

scholarly journals Genetic parameters and estimated genetic gains in young rubber tree progenies

2013 ◽  
Vol 48 (4) ◽  
pp. 411-416 ◽  
Author(s):  
Cecília Khusala Verardi ◽  
Erivaldo José Scaloppi Junior ◽  
Guilherme Augusto Peres Silva ◽  
Lígia Regina Lima Gouvêa ◽  
Paulo de Souza Gonçalves
Keyword(s):  
Genetic Gain ◽  
Genetic Parameters ◽  
Block Design ◽  
Rubber Tree ◽  
First Year ◽  
Genetic Gains ◽  
Selection Gain ◽  
Randomized Block Design ◽  
Using Data ◽  
Selection Of

The objective of this work was to assess the genetic parameters and to estimate genetic gains in young rubber tree progenies. The experiments were carried out during three years, in a randomized block design, with six replicates and ten plants per plot, in three representative Hevea crop regions of the state of São Paulo, Brazil. Twenty-two progenies were evaluated, from three to five years old, for rubber yield and annual girth growth. Genetic gain was estimated with the multi-effect index (MEI). Selection by progenies means provided greater estimated genetic gain than selection based on individuals, since heritability values of progeny means were greater than the ones of individual heritability, for both evaluated variables, in all the assessment years. The selection of the three best progenies for rubber yield provided a selection gain of 1.28 g per plant. The genetic gains estimated with MEI using data from early assessments (from 3 to 5-year-old) were generally high for annual girth growth and rubber yield. The high genetic gains for annual girth growth in the first year of assessment indicate that progenies can be selected at the beginning of the breeding program. Population effective size was consistent with the three progenies selected, showing that they were not related and that the population genetic variability is ensured. Early selection with the genetic gains estimated by MEI can be made on rubber tree progenies.

scholarly journals Performance of F2 Rice (Oryza sativa L.) Segregants Derived from a Cross the BPT-5204 / IR-64Drt1

2020 ◽  
pp. 31-47
Author(s):  
Anjani Kumar ◽  
D. N. Singh ◽  
Krishna Prasad ◽  
Avinash Pandey
Keyword(s):  
Grain Yield ◽  
Field Condition ◽  
Significant Variation ◽  
Oryza Sativa L ◽  
Block Design ◽  
Drought Condition ◽  
Normal Field ◽  
Randomized Block Design ◽  
Rice Genotypes ◽  
Selection Of

The present investigation was carried out with F2 plants from a cross between two parents i.e., BPT-5204 and IR-64Drt1. The selection of parents for crosses was made based on genotypes that were tolerant and susceptible to drought condition. BPT-5204 was drought susceptible and IR-64Drt1 was also tolerant to drought. In this experiment adequate amount of variability was detected for grain yield per plant and its components among 324 segregants evaluated under augmented randomized block design II in normal field condition. The analysis of variance for grain yield and its attributing characters among blocks, treatments, entries, checks and checks vs entries revealed presence of significant variation in the segregants studied. However, with respect to checks, non-significant differences were recorded for only L/B ratio. The results indicated that among 324 rice genotypes including checks, only 9 rice genotypes expressed higher yield compared to seven checks varieties under normal field condition. The segregants S-51, S-122, S-135, S-195, S-199, S-210, S-219, S-222, S-251 were top ranking genotypes with respect to all checks.

scholarly journals Genetics and expected selection gain for growth traits in Eugenia dysenterica DC. populations

Bragantia ◽  
2009 ◽  
Vol 68 (3) ◽  
pp. 629-637 ◽  
Author(s):  
Ananda Virginia de Aguiar ◽  
Roland Vencovsky ◽  
Lázaro José Chaves ◽  
Mara Fernandes Moura ◽  
Lizz Kezzy de Morais
Keyword(s):  
Genetic Variation ◽  
Genetic Parameters ◽  
Growth Traits ◽  
Block Design ◽  
Genetic Material ◽  
Germplasm Collection ◽  
Seed Orchard ◽  
Seedling Seed Orchard ◽  
Randomized Block Design ◽  
Eugenia Dysenterica

The objective of this study was to estimate genetic parameters of quantitative traits in a living germplasm collection of Eugenia dysenterica. The genetic material consisted of 110 progenies derived from 10 natural Eugenia dysenterica subpopulations sampled in the southeastern region of the state of Goiás. The experiment was established in a complete randomized block design, with 110 treatments, four replications and one tree per plot. The study variables were total height, stem diameter and respective growth rates. After the analysis of variance some genetic parameters were estimated. The levels of genetic variation in the collection were high and the highest proportion was found within subpopulations. Highest coefficients of heritability and genetic variation were observed in subpopulations from the counties Catalão, Três Ranchos, Cristalina and Senador Canedo. Considering the promising expected progress for growth traits, this collection can be converted into an unrogued seedling seed orchard, aiming the production of improved seed.

scholarly journals Study of repeatability and phenotypical stabilization in kale using frequentist, Bayesian and bootstrap resampling approaches

2019 ◽  
Vol 41 (1) ◽  
pp. 42606
Author(s):  
Orlando Gonçalves Brito ◽  
Valter Carvalho de Andrade Júnior ◽  
Alcinei Mistico de Azevedo ◽  
Luan Mateus Silva Donato ◽  
Lidiane Rodrigues Silva ◽  
...  
Keyword(s):  
Genetic Improvement ◽  
Genetic Parameters ◽  
Block Design ◽  
Bootstrap Resampling ◽  
Average Mass ◽  
Estimated Parameters ◽  
Randomized Block Design ◽  
Number Of Leaves ◽  
Bayesian Methodologies ◽  
Selection Of

The aim of this study was to obtain information for the genetic improvement of kale through repeatability and phenotypic stabilization studies and to compare methodologies that represent the reliability of the estimated parameters. Thirty-three half-sib progenies were evaluated in a randomized block design with three replicates and six plants per plot. Eight harvests were evaluated in terms of the yield of fresh leaves, number of shoots, number of leaves and average mass of leaves. Then, a phenotypic repeatability and stabilization study was performed, estimating the genetic parameters σ2a, σ²g, σ²e, and the coefficient of environmental variation and repeatability using the frequentist and Bayesian methodologies. To evaluate the reliability of these estimates, intervals were obtained using the frequentist, Bayesian and bootstrap methods. It was verified that the reliable selection of progenies of half-sib of kale can be achieved in four harvests that were realized between 95 and 170 days after planting. It was observed that the frequentist and Bayesian methodologies are better suited to obtain reliable estimates of the genetic parameters evaluated, as the last one provided smaller amplitudes for the obtained intervals. The bootstrap methodologies are not recommended for phenotypic repeatability and stabilization studies in kale.

Tolerance and Phenotypic Analysis of Irrigated Rice Genotypes under Iron Toxicity

2019 ◽  
pp. 1-11
Author(s):  
Eduardo Anibele Streck ◽  
Gabriel Almeida Aguiar ◽  
Paulo Henrique Karling Facchinello ◽  
Lais Perin ◽  
Pedro Ujacov da Silva ◽  
...  
Keyword(s):  
Negative Correlation ◽  
Evaluation System ◽  
Dry Matter ◽  
Block Design ◽  
Iron Toxicity ◽  
Breeding Program ◽  
Temperate Climate ◽  
Irrigated Rice ◽  
Excess Iron ◽  
Rice Genotypes

Introduction: The development of tolerant rice genotypes is the main tool to minimize the problem caused by the excess of iron in the soil. Aims: The study aims to evaluate the response of genotypes of the Embrapa breeding program of irrigated rice against iron stress, as well as to envision the relationship of the effect of this disorder on leaf mass production in different phenological phases of the plant. Study Design: The trial was established in a randomized block design with additional controls, with the plots consisting of four rows 3 m long with 0.20 m spacing between rows. Place and Duration of Study: The experiment was conducted in the experimental field of Embrapa Temperate Climate Lowlands Station, in a period of nine years, consisting of the harvest of 2006/2007 until 2014/2015. Methodology: It was evaluated 255 lines along with 4 additional control cultivars with known tolerance levels. The symptoms were evaluated at 40, 70 and 100 days after plant emergence through a visual assessment in the field, based on the standard evaluation system for rice. In addition to the determination of the average toxicity levels of genotypes, the mass was collected, constituted by the dry matter of shoot, for the detection of interrelationships through their correlations. Results: It was found that 58.82% of the developed irrigated rice lines show good tolerance to toxicity by excess iron. The association of the content of dry matter of shoots and the levels of indirect toxicity of iron showed a significant negative correlation (-0.6848), being that the highest magnitude of negative correlation was at 70 DAE (-0.6161). Conclusion: There is variability for tolerance to indirect iron toxicity between the irrigated rice genotypes assessed. The breeding program of irrigated rice of Embrapa has been effective in developing genotypes with tolerance by excess iron in the soil over nine years. There is a negative association between the content of dry matter of shoots and the levels of indirect iron toxicity.

scholarly journals Priming Benih Padi (Oryza sativa L.) dengan Zn untuk Meningkatkan Vigor Bibit pada Cekaman Terendam

2016 ◽  
Vol 44 (1) ◽  
pp. 8
Author(s):  
Sulaiman Sulaiman ◽  
Rujito Agus Suwignyo ◽  
Mery Hasmeda ◽  
Andi Wijaya
Keyword(s):  
Oryza Sativa L ◽  
Block Design ◽  
Dry Weight ◽  
Seed Priming ◽  
Rice Seed ◽  
Seedling Vigor ◽  
Randomized Block Design ◽  
Submergence Stress ◽  
Soil Media ◽  
Rice Genotypes

<br />Seed priming has been widely used to improve seedling vigor of several crops  such as corn, wheat, and rice. Seed priming with zinc to increase seedling tolerance on submergence stress had never been evaluated. The objective of this research was to identify agronomical and physiological characteristics of several rice genotypes during seedling stage at submergence stress following zinc priming treatment. This research used factorial randomized block design with three replications. The first factor was rice genotypes and second factor was zinc solution of ZnSO4.7H2O. Seeds were soaked with Zn solution at different concentrations namely 0, 2.5, dan 5.0 mM respectively for 24 hours. After that the seeds were germinated on soil media in side the plastic box. Fourteen days-old seedling were submerged in water for 5 days and then return to normal condition for recovery. Parameters being observed included seedling dry weight, shoot carbohydrate, and leaves chlorophyl which were measured after 10 days of recovery. Seedling height was measured once a week from 2nd to 4th week. Results showed that intolerant genotypes to submergence stress grew faster but seedling dry weight, shoot carbohydrate and leaves chlorophyll content were lower compared to those tolerant genotypes. Local and national varieties which were not tolerant to submergence stress could be improved by priming treatment with 5.0mM zinc.<br /><br />Keywords: abiotic-stress, seeds- priming <br /><br />

scholarly journals Genetic Divergence Analysis of Rice Genotypes under Salt Stress Environment

2020 ◽  
pp. 33-39
Author(s):  
Anuj Kumar ◽  
D. K. Dwivedi ◽  
Pradeep K. Bharti ◽  
Shivani . ◽  
Preeti Kumari ◽  
...  
Keyword(s):  
Salt Stress ◽  
Normal Condition ◽  
Genetic Divergence ◽  
Block Design ◽  
Stress Conditions ◽  
Saline Condition ◽  
Randomized Block Design ◽  
Cluster Distance ◽  
Rice Genotypes ◽  
Cluster 2

The present investigations were conducted in randomized block design with three replications within the net house of the department of PMB&GE, A. N.D.U.A.T, Kumar Ganj, Ayodhya to estimate the genetic divergence under normal and salt stress conditions involving 20 rice genotypes during Kharif 2018-19, on the basis of relative parameters of D2 values, the clustering pattern of 20 rice genotypes under normal and salt stress conditions were grouped into five non-overlapped clusters. Under normal condition, Cluster III having highest 7 rice genotypes, Cluster II having 5 genotypes, cluster V having 4 genotypes and IV having highest 3 rice genotype. Cluster I having only one genotype. Under saline condition, Cluster I having highest rice 6 genotypes, cluster III having 5 genotypes and cluster II & IV having 4 genotypes respectively. Cluster V having only one genotype. It means the genetic similarity was found in the genotypes were expressed within the cluster and the pattern of distribution of genotypes in various clusters exhibited that topographical diversity wasn't associated with ancestral diversity as genotypes of same countryside were grouped into different cluster and vice-versa. The highest inter cluster distance was recorded between cluster 2 and cluster 5 (26108.030) followed by between cluster 1 and cluster 5 (18550.010), cluster 3 and cluster 5 (15231.860), cluster 4 and cluster 5 (5335.860) in normal condition and in saline condition the maximum inter cluster distance was existed between cluster 4 and cluster 5 (2344.091) followed by between cluster 3 and cluster 5 (2067.610), cluster 2 and cluster 5 (1447.564), cluster 1 and cluster 5 (1238.095). The results showed extensive variation from one cluster to other in respect of cluster means for all parameters, which represented that genotypes having distinctly different mean performance for various characters were reported into different clusters.Rice

scholarly journals Study of Genetic Diversity for Selected Genotypes in Rice

2021 ◽  
pp. 51-59
Author(s):  
Ch Sai Nayan Raju ◽  
Gabrial M. Lal ◽  
Ch. Damodar Raju
Keyword(s):  
Genetic Diversity ◽  
Block Design ◽  
Indian Institute ◽  
Breeding Program ◽  
Salt Tolerant ◽  
Randomized Block Design ◽  
Cluster Distance ◽  
Genotype Cluster ◽  
Rice Genotypes ◽  
Telangana State

The present investigation was undertaken to study the 54 rice genotypes to estimate the diversity, among selected rice genotypes for yield and its component characters. The experiment was carried out during Kharif, 2020, in a randomized block design with three replications at the Indian Institute of Rice Research, Rajendranagar, Hyderabad voluntary center (Kampasagar), in Telangana State. The data was collected on characters viz and salt-tolerant score 0-9 scale. The 54 genotypes of rice were grouped into twelve clusters. Clusters with their genotypes are presented in. Cluster I had 15 genotypes, Cluster II had 13 genotypes, whereas Cluster III had 4 genotypes Cluster IV, V had 4 genotypes and cluster VI had 6 genotypes cluster VII had 1 genotype cluster VIII had three genotypes cluster Ⅸ, Ⅹ, Ⅺ had 1 genotypes cluster Ⅻ had 3 genotypes Highest inter-cluster distance was exhibited between clusters VIII and Ⅺ. and lowest cluster divergence found between the clusters Ⅳ and VII Greater the distance, wider the genetic diversity among the genotypes of those clusters. For high heterotic recombinants performing genotypes would be used as parents in the recombination breeding program. 

scholarly journals Pengujian Vigor Daya Simpan dan Vigor terhadap Kekeringan pada Benih Padi Gogo dan Padi Sawah

2013 ◽  
Vol 1 (1) ◽  
pp. 67
Author(s):  
Feni Shintarika ◽  
Faiza Chairani Suwarno ◽  
. Suwarno
Keyword(s):  
Drought Stress ◽  
Upland Rice ◽  
Block Design ◽  
Seed Vigor ◽  
Lowland Rice ◽  
Rice Seed ◽  
Ethanol Vapour ◽  
Randomized Block Design ◽  
Rice Genotypes ◽  
Seed Storability

<p style="text-align: justify;">The objectives of the study were to evaluate seed storability and vigor to drought of rice genotypes from different ecologies and correlation among the characters. The experiments were conducted in the Seed Science and Technology Laboratory, Bogor Agricultural University from April to August 2011. Duration of rapid aging using ethanol vapour for testing seed storability were 87.6 and 155.4 minutes for upland and lowland rice seeds respectively. The rolled paper methods with Polyethylen Glycol (PEG 6000) at -2.0 bar was used for testing seed vigor to drought. Rice seed of 40 genotype consisting of 20 upland and 20 lowland were evaluated using Randomized Block Design with three replications. There were no correlation between seed storability and vigor to drought on all genotypes, and no similiarity of those characters on the best five genotypes. Genotypes with the highest storability were B12154D-MR-22-8 for upland rice and Aek Sibundong for lowland. Genotypes with the highest vigor to drought were B12165D-MR-8-1 and B12161D-MR-1-4-2 for upland rice, B12672-MR-19-2-PN-1-3 and Aek Sibundong for lowland.</p><p>Keywords : drought stress, Rapid aging</p>

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