scholarly journals Dynamism and context dependency in the diversification of the megadiverse plant genus Solanum L. (Solanaceae)

2018 ◽  
Author(s):  
Susy Echeverrĩa-Londoño ◽  
Tiina Särkinen ◽  
Isabel S Fenton ◽  
Sandra Knapp ◽  
Andy Purvis

SummaryExplosive radiations have been considered one of the most intriguing diversification patterns across the Tree of Life, but the subsequent change, movement and extinction of the constituent species makes radiations hard to discern or understand as geological time passes.We synthesised phylogenetic and distributional data for an ongoing radiation — the mega-diverse plant genus Solanum L. — to show how dispersal events and past climatic changes have interacted to shape diversification.We found that despite the vast diversity of Solanum lineages in the Neotropics, lineages in the Old World are diversifying more rapidly. This recent explosive diversification coincides with a long-distance dispersal event from the Neotropics, at the time when, and to places where, major climatic changes took place. Two different groups of Solanum have migrated and established in Australia, but only the arid-adapted lineages experienced significant increases in their diversification, which is consistent with adaptation to the continent’s long-term climatic trend and the diversification of other arid-adapted groups.Our findings provide a clear example of how successful colonisation of new areas and niches can – but do not always – drive explosive radiations.

2019 ◽  
Vol 104 (7) ◽  
pp. e2.49-e2
Author(s):  
Susie Gage

AimThe National Patient Safety Agency (NPSA)1 identified heparin as a major cause of adverse events associated with adverse incidents, including some fatalities. By ensuring good communication, this should be associated with risk reduction.1 The aim of this study was to ensure there is clear anticoagulation communication on discharge, from the paediatric intensive care unit (PICU) electronic prescribing system (Philips), to the paediatric cardiac high dependency unit and paediatric cardiac ward. To investigate whether the heparin regimen complies with the hospital’s anticoagulant guidelines and if there is any deviation; that this is clearly documented. To find out if there is an indication documented for the heparin regimen chosen and if there is a clear long term plan documented for the patient, after heparin cessation.MethodsA report was generated for all patients who were prescribed a heparin infusion on PICU, between 1st January 2018 and 30th June 2018, from the Philips system. All discharge summaries from the PICU Philips system were reviewed. Only paediatric cardiac patients were included that had a heparin infusion prescribed on discharge, all other discharge summaries were excluded from the study. Each discharge summary was reviewed in the anticoagulant section; for the heparin regimen chosen, whether it complies with the hospital’s anticoagulant guidelines and if there was any deviation whether this was documented. The indication documented of which heparin regimen was chosen and whether a clear long term plan was documented after heparin cessation; for example if the patient is to be transferred onto aspirin, clopidogrel, warfarin or enoxaparin.Results82 discharge summaries were reviewed over the 6 month period between 1st January 2018 and 30th June 2018; 16 were excluded as were not paediatric cardiac, leaving 66 paediatric cardiac discharge summaries that were reviewed. 45 out of 66 (68%) complied with the hospital’s heparin anticoagulation guidelines. Of the 32% that deviated from the protocol; only 33% (7 out of 21) had a reason documented. Only 50% (33) of the summaries reviewed had an indication for anticoagulation noted on the discharge summary and 91% of discharge summaries had a long term anticoagulant plan documented.ConclusionThe electronic prescribing system can help to ensure a clear anticoagulation communication as shown by 91% of the anticoagulation long term plan being clearly documented; making it a more seamless patient transfer. On the Philips PICU electronic prescribing system there is an anticoagulant section on the discharge summary that has 3 boxes that need to be completed; heparin regimen, indication and anticoagulation long term plan. However, despite these boxes; deviations from the anticoagulant protocol were poorly documented as highlighted by only 33% having the reason highlighted in the discharge summary, only 50% of the indications were documented. Despite having prompts for this information on the discharge summary, the medical staffs needs to be aware to complete this information, in order to reduce potential medication errors and risk.ReferenceThe National Patient Safety Agency (NPSA). Actions that make anticoagulant therapy safer. NPSA; March 2007.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Jesse R. Conklin ◽  
Simeon Lisovski ◽  
Phil F. Battley

AbstractGlobally, bird migration is occurring earlier in the year, consistent with climate-related changes in breeding resources. Although often attributed to phenotypic plasticity, there is no clear demonstration of long-term population advancement in avian migration through individual plasticity. Using direct observations of bar-tailed godwits (Limosa lapponica) departing New Zealand on a 16,000-km journey to Alaska, we show that migration advanced by six days during 2008–2020, and that within-individual advancement was sufficient to explain this population-level change. However, in individuals tracked for the entire migration (50 total tracks of 36 individuals), earlier departure did not lead to earlier arrival or breeding in Alaska, due to prolonged stopovers in Asia. Moreover, changes in breeding-site phenology varied across Alaska, but were not reflected in within-population differences in advancement of migratory departure. We demonstrate that plastic responses can drive population-level changes in timing of long-distance migration, but also that behavioral and environmental constraints en route may yet limit adaptive responses to global change.


Sensors ◽  
2021 ◽  
Vol 21 (9) ◽  
pp. 3281
Author(s):  
Xu He ◽  
Yong Yin

Recently, deep learning-based techniques have shown great power in image inpainting especially dealing with squared holes. However, they fail to generate plausible results inside the missing regions for irregular and large holes as there is a lack of understanding between missing regions and existing counterparts. To overcome this limitation, we combine two non-local mechanisms including a contextual attention module (CAM) and an implicit diversified Markov random fields (ID-MRF) loss with a multi-scale architecture which uses several dense fusion blocks (DFB) based on the dense combination of dilated convolution to guide the generative network to restore discontinuous and continuous large masked areas. To prevent color discrepancies and grid-like artifacts, we apply the ID-MRF loss to improve the visual appearance by comparing similarities of long-distance feature patches. To further capture the long-term relationship of different regions in large missing regions, we introduce the CAM. Although CAM has the ability to create plausible results via reconstructing refined features, it depends on initial predicted results. Hence, we employ the DFB to obtain larger and more effective receptive fields, which benefits to predict more precise and fine-grained information for CAM. Extensive experiments on two widely-used datasets demonstrate that our proposed framework significantly outperforms the state-of-the-art approaches both in quantity and quality.


Author(s):  
Sofia Ainonen ◽  
Mysore V Tejesvi ◽  
Md. Rayhan Mahmud ◽  
Niko Paalanne ◽  
Tytti Pokka ◽  
...  

Abstract Background Intrapartum antibiotic prophylaxis (IAP) is widely used, but the evidence of the long-term effects on the gut microbiota and subsequent health of children is limited. Here, we compared the impacts of perinatal antibiotic exposure and later courses of antibiotic courses on gut microbiota. Methods This was a prospective, controlled cohort study among 100 vaginally delivered infants with different perinatal antibiotic exposures: control (27), IAP (27), postnatal antibiotics (24), and IAP and postnatal antibiotics (22). At 1 year of age, we performed next-generation sequencing of the bacterial 16S ribosomal RNA gene of fecal samples. Results Exposure to the perinatal antibiotics had a clear impact on the gut microbiota. The abundance of the Bacteroidetes phylum was significantly higher in the control group, whereas the relative abundance of Escherichia coli was significantly lower in the control group. The impact of the perinatal antibiotics on the gut microbiota composition was greater than exposure to later courses of antibiotics (28% of participants). Conclusions Perinatal antibiotic exposure had a marked impact on the gut microbiota at the age of 1 year. The timing of the antibiotic exposure appears to be the critical factor for the changes observed in the gut microbiota. Impact Infants are commonly exposed to IAP and postnatal antibiotics, and later to courses of antibiotics during the first year of life. Perinatal antibiotics have been associated with an altered gut microbiota during the first months of life, whereas the evidence regarding the long-term impact is more limited. Perinatal antibiotic exposure had a marked impact on the infant’s gut microbiota at 1 year of age. Impact of the perinatal antibiotics on the gut microbiota composition was greater than that of the later courses of antibiotics at the age of 1 year.


2020 ◽  
Vol 8 (Suppl 3) ◽  
pp. A454-A454
Author(s):  
Georgina Long ◽  
Reinhard Dummer ◽  
Douglas Johnson ◽  
Olivier Michielin ◽  
Salvador Martin-Algarra ◽  
...  

BackgroundPrevious findings from the MASTERKEY-265 phase 1b study showed that the combination of T-VEC and pembrolizumab was well tolerated and produced a high complete response (CR) rate of 43% in patients with advanced melanoma.1 The 3-year progression-free survival (PFS) and overall survival (OS) rates at that time were 53.6% and 71%, respectively. Here, we report the results of the long-term follow-up efficacy analyses.MethodsThe MASTERKEY-265 phase 1b trial (NCT02263508) was an open-label, single-arm study that enrolled patients who had unresectable, stage IIIB-IVM1c melanoma with injectable, measurable lesions and no prior systemic treatment. T-VEC was administered intralesionally at the approved dosing starting day 1 of week 1. Pembrolizumab (200 mg) was administered intravenously Q2W beginning on day 1 of week 6. The maximum treatment period was 2 years. The primary endpoint was dose-limiting toxicities; key secondary endpoints included objective response rate and PFS per modified irRC, OS, and safety.ResultsAs of the data cutoff (Mar 2, 2020), all 21 patients enrolled were off treatment; 6 died and 15 are in long-term follow-up. The median follow-up time was 58.6 months (range: 1.4–61.6). The CR rate remained 43% (9/21 patients). Twelve of the 13 responders (92.3%) are still in response, including all 9 patients with a CR. Median duration of response was not reached (range: 2.8+–54.3+ months). Median PFS and OS were not reached at the data cutoff. KM estimates of 4-year PFS and OS rates were 55.9% and 71.4%, respectively, which have held stable since the 3-year analysis. Patients who achieved a CR or partial response had better OS (p=0.0056) compared to those who did not respond. Median OS for non-responders was 24.4 months and was not reached for responders. No additional safety signals were detected.ConclusionsAt almost 5 years of follow-up, median PFS and OS were not reached for patients treated with the combination of T-VEC and pembrolizumab in this phase 1b study of unresectable metastatic melanoma. 92% of responders remained in response with improved OS observed in responders compared with non-responders. The corresponding randomized phase 3 trial has completed enrollment and is currently ongoing.Trial RegistrationNCT02263508Ethics ApprovalThe study was approved by the Ethics Board of each institution involved in this study and can be produced upon request.ReferenceLong G, Dummer R, Andtbacka R, et al. Follow-up analysis of MASTERKEY-265 Phase 1b (ph1b) trial of talimogene laherparepvec (T-VEC) in combination (combo) with pembrolizumab (pembro) in patients (pts) with unresectable stage IIIB–IVM1c melanoma (MEL). Pigment Cell Melanoma Res 2019;32:133–134.


Biologia ◽  
2011 ◽  
Vol 66 (5) ◽  
Author(s):  
Attila Molnár V ◽  
András Máté ◽  
Gábor Sramkó

AbstractOne flowering specimen of Ophrys bertolonii (s. str.) — a plant with a Circum-Adriatic distribution and hitherto unknown in other regions — was found on 7th May 2010 in the vicinity of Kunadacs (Central Hungary; N 47°00′ E 19°17′). The nearest known populations of this Mediterranean plant inhabit the Adriatic coast (ca. 450 km away) in Croatia, therefore this new occurrence represents a significant long distance dispersal event. The circumstances of the occurrence argue against introduction, but we can not decide now whether this new appearance is temporary or permanent. The permanent establishment of this strictly entomophilous plant requires the presence of its specific pollinator in the close neighbourhood of the habitat. However, no pollination was observed on the three flowers of the plant until 9th May, and one day later the stem had disappeared most likely due to grazing. Whatever the long-term fate of the plant is, this discovery represents a significant long distance (jump) dispersal event, and testifies to the dispersal ability of Ophrys species. Additionally, the appearance of a mature Adriatic plant in Central Europe fits well into the currently observed, climate change driven northward expansion of European orchids, therefore this finding most likely reflects a growing Mediterranean-like climatic influence in the region.


The Holocene ◽  
2021 ◽  
pp. 095968362110331
Author(s):  
Matthew Adesanya Adeleye ◽  
Simon Edward Connor ◽  
Simon Graeme Haberle

Understanding long-term (centennial–millennial scale) ecosystem stability and dynamics are key to sustainable management and conservation of ecosystem processes under the currently changing climate. Fossil pollen records offer the possibility to investigate long-term changes in vegetation composition and diversity on regional and continental scales. Such studies have been conducted in temperate systems, but are underrepresented in the tropics, especially in Africa. This study attempts to synthesize pollen records from Nigeria (tropical western Africa) and nearby regions to quantitatively assess Holocene regional vegetation changes (turnover) and stability under different climatic regimes for the first time. We use the squared chord distance metric (SCD) to assess centennial-scale vegetation turnover in pollen records. Results suggest vegetation in most parts of Nigeria experienced low turnover under a wetter climatic regime (African Humid Period), especially between ~8000 and 5000 cal year BP. In contrast, vegetation turnover increased significantly under the drier climatic regime of the late-Holocene (between ~5000 cal year BP and present), reflecting the imp role of moisture changes in tropical west African vegetation dynamics during the Holocene. Our results are consistent with records of vegetation and climatic changes in other parts of Africa, suggesting the Holocene pattern of vegetation change in Nigeria is a reflection of continental-scale climatic changes.


2021 ◽  
Author(s):  
Chloé M. Marcilly ◽  
Trond H. Torsvik ◽  
Mathew Domeier ◽  
Dana L. Royer

<p>CO<sub>2</sub> is the most important greenhouse gas in the Earth’s atmosphere and has fluctuated considerably over geological time. However, proxies for past CO<sub>2 </sub>concentrations have large uncertainties and are mostly limited to Devonian and younger times. Consequently, CO<sub>2</sub> modelling plays a key role in reconstructing past climate fluctuations. Facing the limitations with the current CO<sub>2</sub> models, we aim to refine two important forcings for CO<sub>2</sub> levels over the Phanerozoic, namely carbon degassing and silicate weathering.</p><p>Silicate weathering and carbonate deposition is widely recognized as a primary sink of carbon on geological timescales and is largely influenced by changes in climate, which in turn is linked to changes in paleogeography. The role of paleogeography on silicate weathering fluxes has been the focus of several studies in recent years. Their aims were mostly to constrain climatic parameters such as temperature and precipitation affecting weathering rates through time. However, constraining the availability of exposed land is crucial in assessing the theoretical amount of weathering on geological time scales. Associated with changes in climatic zones, the fluctuation of sea-level is critical for defining the amount of land exposed to weathering. The current reconstructions used in<sub></sub>models tend to overestimate the amount of exposed land to weathering at periods with high sea levels. Through the construction of continental flooding maps, we constrain the effective land area undergoing silicate weathering for the past 520 million years. Our maps not only reflect sea-level fluctuations but also contain climate-sensitive indicators such as coal (since the Early Devonian) and evaporites to evaluate climate gradients and potential weatherablity through time. This is particularly important after the Pangea supercontinent formed but also for some time after its break-up.</p><p>Whilst silicate weathering is an important CO<sub>2</sub> sink, volcanic carbon degassing is a major source but one of the least constrained climate forcing parameters. There is no clear consensus on the history of degassing through geological time as there are no direct proxies for reconstructing carbon degassing, but various proxy methods have been postulated. We propose new estimates of plate tectonic degassing for the Phanerozoic using both subduction flux from full-plate models and zircon age distribution from arcs (arc-activity) as proxies.</p><p>The effect of revised modelling parameters for weathering and degassing was tested in the well-known long-term models GEOCARBSULF and COPSE. They revealed the high influence of degassing on CO<sub>2</sub> levels using those models, highlighting the need for enhanced research in this direction. The use of arc-activity as a proxy for carbon degassing leads to interesting responses in the Mesozoic and brings model estimates closer to CO<sub>2 </sub> proxy values. However, from simulations using simultaneously the revised input parameters (i.e weathering and degassing) large model-proxy discrepancies remain and notably for the Triassic and Jurassic.</p><p> </p>


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