Traits and phylogenies modulate the environmental responses of wood‐inhabiting fungal communities across spatial scales

2022 ◽  
Author(s):  
Nerea Abrego ◽  
Claus Bässler ◽  
Morten Christensen ◽  
Jacob Heilmann‐Clausen
2010 ◽  
Vol 22 (6) ◽  
pp. 591-602 ◽  
Author(s):  
Clive Howard-Williams ◽  
Ian Hawes ◽  
Shulamit Gordon

AbstractAfter a decade of research, New Zealand’s Latitudinal Gradient Project (LGP) now includes primary sites from Cape Hallett (72°S) to the Darwin Glacier (80°S), while additional observations extend the latitudinal transect from 84°S to sub-Antarctic regions. The LGP has been structured around a hypothesis that, in a frigid continent, ice dynamics is the key ecosystem variable. For terrestrial environments, two aspects of ice dynamics appear to underlie much of the observed variability. Firstly, the aridity of the region makes the transition from ice to water a key ecological factor, and secondly, the legacy of ice dynamics dating as far back as the Pliocene is imprinted on biogeography. These factors operate at difference temporal and spatial scales and neither is monotonically related to latitude. Both are also complicated by meso-scale cross gradients of altitude and distance from the sea and micro-scale local variability. Whilst climate does vary on a broad-scale, differences within the northern and central parts of Victoria Land that the LGP has so far examined are insufficient to impose any overarching effect that can overwhelm these more local effects. The result is a multiple-scale patchwork of habitats and communities, more or less replicated across the transect, in which variability at any given latitude generally exceeds variability between latitudes. A lesser quantum of research has been directed at marine ecosystems, but here there is a similar picture of local variability dominating within the Ross Sea, with significant latitude-scale effects only emerging when transects are extended into maritime- and sub-Antarctic regions. It is implicit, but not specifically recognized in the LGP context, that a further confounding effect on the interpretation of ‘transect’ information is the multiple stressor concept that requires a simultaneous analysis of interacting (synergistic or antagonistic) factors and environmental responses. As the LGP continues to extend further south, climate is expected to become more extreme, and water availability may change sufficiently for loss of habitat and species diversity to occur. Here we discuss options for refining the LGP approach to optimize its potential for understanding variability, and the factors underpinning this, in the Ross Sea Sector.


2021 ◽  
Author(s):  
Yong Zheng ◽  
Liang Chen ◽  
Niu-Niu Ji ◽  
Yong-Long Wang ◽  
Cheng Gao ◽  
...  

Latitudinal gradients provide opportunities to better understand soil fungal community assembly and its relationship with vegetation, climate, soil and ecosystem function. We quantified the relative importance of stochastic and deterministic processes in structuring soil fungal communities using patterns of community dissimilarity observed within and between twelve natural forests. The results revealed that whole fungal communities and communities of arbuscular and ectomycorrhizal fungi consistently exhibited divergent patterns but with less divergence for ectomycorrhizal fungi at most sites. Within those forests, no clear relationships were observed between the degree of divergence within fungal and plant communities. When comparing communities at larger spatial scales, among the twelve forests, we observed distinct separation in all three fungal groups among tropical, subtropical and temperate biomes. Soil fungal β-diversity patterns between forests were greater when comparing forests exhibiting high habitat turnover, with these patterns being driven to a greater extent in each fungal group by temperature, soil pH, soil carbon and plant community composition than by geographic distance. Taken together, although large-scale community turnover could be attributed to specific environmental drivers, strong divergence during community assembly in forest soils at local scales limits the predictability of fungal community assembly outcomes.


2020 ◽  
Author(s):  
Andre Boraks ◽  
Gregory M. Plunkett ◽  
Thomas Doro ◽  
Frazer Alo ◽  
Chanel Sam ◽  
...  

AbstractFungi provide essential ecosystem services and engage in a variety of symbiotic relationships with trees. In this study, we investigate the spatial relationship of trees and fungi at a community level. We characterized the spatial dynamics for above- and belowground fungi using a series of forest monitoring plots, at nested spatial scales, located in the tropical South Pacific. Fungal communities exhibited strong distance decay of similarity across our entire sampling range (3–110,000 m), and also at small spatial scales (< 50 m). Unexpectedly, this pattern was inverted at an intermediate scale (3.7–26 km). At large scales (80–110 km), belowground and aboveground fungal communities responded inversely to increasing geographic distance. Aboveground fungal community turnover (beta diversity) was best explained, at all scales, by geographic distance. In contrast, belowground fungal community turnover was best explained by geographic distance at small scales, and tree community composition at large scales. We demonstrate scale-dependent spatial dynamics of fungal communities, synchronous spatial dynamics for trees and fungi, and the varying influence of habitat versus geographic distance in structuring Soil, Selaginella sp., and Understory fungal communities.


2020 ◽  
Author(s):  
Kel Cook ◽  
Jyotsna Sharma ◽  
Andrew Taylor ◽  
Ian Herriott ◽  
D Taylor

2020 ◽  
Author(s):  
Amanda S. Gallinat ◽  
William D. Pearse

AbstractCommunity assembly can be driven by species’ responses to environmental gradients, and interactions within (e.g., competition) and across (e.g., herbivory) clades. These ecological dynamics are mediated by species’ traits, which are in turn shaped by past evolution. As such, identifying the drivers of species assembly is made difficult by the differing temporal and spatial scales of ecological and evolutionary dynamics. Two recent advances have emerged to address the cross-scale challenge of modeling species assembly: phylogenetic generalized linear mixed modeling (PGLMM) and earth observation networks (EONs). PGLMM integrates through time by modeling the evolution of trait-based community assembly, while EONs synthesize across space by placing standardized site-level species occurrence data within their regional context. Here we describe a framework for combining these tools to investigate the drivers of species assembly, and so address three outstanding questions: (1) Does evolution adapt or constrain regional-scale environmental responses? (2) Do evolved responses to past competition minimize or enhance present-day competition? (3) Are species’ cross-clade associations evolutionarily constrained? We provide a conceptual overview of how PGLMM and EONs can be synthesized to answer these questions, and provide exemplar Bayesian PGLMM code. Finally, we describe the capacity of these tools to aid in conservation and natural resource management, including predicting future colonization by rare and invasive species, vulnerable mutualisms, and pest and pathogen outbreaks.


2009 ◽  
Vol 75 (24) ◽  
pp. 7639-7648 ◽  
Author(s):  
David J. Burke ◽  
Juan C. López-Gutiérrez ◽  
Kurt A. Smemo ◽  
Charlotte R. Chan

ABSTRACT Although the level of diversity of root-associated fungi can be quite high, the effect of plant distribution and soil environment on root-associated fungal communities at fine spatial scales has received little attention. Here, we examine how soil environment and plant distribution affect the occurrence, diversity, and community structure of root-associated fungi at local patch scales within a mature forest. We used terminal restriction fragment length polymorphism and sequence analysis to detect 63 fungal species representing 28 different genera colonizing tree root tips. At least 32 species matched previously identified mycorrhizal fungi, with the remaining fungi including both saprotrophic and parasitic species. Root fungal communities were significantly different between June and September, suggesting a rapid temporal change in root fungal communities. Plant distribution affected root fungal communities, with some root fungi positively correlated with tree diameter and herbaceous-plant coverage. Some aspects of the soil environment were correlated with root fungal community structure, with the abundance of some root fungi positively correlated with soil pH and moisture content in June and with soil phosphorous (P) in September. Fungal distribution and community structure may be governed by plant-soil interactions at fine spatial scales within a mature forest. Soil P may play a role in structuring root fungal communities at certain times of the year.


2020 ◽  
Author(s):  
Jared Bernard ◽  
Christopher B. Wall ◽  
Maria S. Costantini ◽  
Randi L. Rollins ◽  
Melissa L. Atkins ◽  
...  

AbstractPlant microbiomes are shaped by forces working at different spatial scales. Environmental factors determine a pool of potential symbionts while host physiochemical factors influence how those microbes associate with distinct plant tissues. Interactions between these scales, however, are seldom considered. Here we analyze epiphytic microbes from nine Hibiscus tiliaceus trees across a steep environmental gradient within a single Hawaiian watershed. At each location we sampled eight microhabitats: leaves, petioles, axils, stems, roots, and litter from the plant, as well as surrounding air and soil. While the composition of microbial communities is driven primarily by microhabitat, this variable predicted more than twice the compositional variance for bacteria compared to fungi. Fungal community compositional dissimilarity increased more rapidly along the gradient than did bacteria. Additionally, the spatial dynamics of fungal communities differed among plant parts, and these differences influenced the distribution patterns and range size of individual taxa. Within plants, microbes were compositionally nested such that aboveground communities contained a subset of the diversity found belowground. Our findings identify potential differences underlying the mechanisms shaping communities of fungi and bacteria associated with plants, and indicate an interaction between assembly mechanisms working simultaneously on different spatial scales.


Author(s):  
Kouki Hikosaka ◽  
Katsuto Tsujimoto

AbstractSolar-induced chlorophyll fluorescence (SIF) and photochemical reflectance index (PRI) are expected to be useful for remote sensing of photosynthetic activity at various spatial scales. This review discusses how chlorophyll fluorescence and PRI are related to the CO2 assimilation rate at a leaf scale. Light energy absorbed by photosystem II chlorophylls is allocated to photochemistry, fluorescence, and heat dissipation evaluated as non-photochemical quenching (NPQ). PRI is correlated with NPQ because it reflects the composition of xanthophylls, which are involved in heat dissipation. Assuming that NPQ is uniquely related to the photochemical efficiency (quantum yield of photochemistry), photochemical efficiencies can be assessed from either chlorophyll fluorescence or PRI. However, this assumption may not be held under some conditions such as low temperatures and photoinhibitory environments. Even in such cases, photosynthesis may be estimated more accurately if both chlorophyll fluorescence and PRI are determined simultaneously. To convert from photochemical efficiency to CO2 assimilation, environmental responses in stomatal conductance also need to be considered. Models linking chlorophyll fluorescence and PRI with CO2 assimilation rates will contribute to understanding and future prediction of the global carbon cycle.


Author(s):  
J. R. Michael

X-ray microanalysis in the analytical electron microscope (AEM) refers to a technique by which chemical composition can be determined on spatial scales of less than 10 nm. There are many factors that influence the quality of x-ray microanalysis. The minimum probe size with sufficient current for microanalysis that can be generated determines the ultimate spatial resolution of each individual microanalysis. However, it is also necessary to collect efficiently the x-rays generated. Modern high brightness field emission gun equipped AEMs can now generate probes that are less than 1 nm in diameter with high probe currents. Improving the x-ray collection solid angle of the solid state energy dispersive spectrometer (EDS) results in more efficient collection of x-ray generated by the interaction of the electron probe with the specimen, thus reducing the minimum detectability limit. The combination of decreased interaction volume due to smaller electron probe size and the increased collection efficiency due to larger solid angle of x-ray collection should enhance our ability to study interfacial segregation.


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