scholarly journals Multiscale interactions between plant part and a steep environmental gradient determine plant microbial composition in a tropical watershed

2020 ◽  
Author(s):  
Jared Bernard ◽  
Christopher B. Wall ◽  
Maria S. Costantini ◽  
Randi L. Rollins ◽  
Melissa L. Atkins ◽  
...  
Keyword(s):  
Environmental Gradient ◽  
Spatial Scales ◽  
Spatial Dynamics ◽  
Distribution Patterns ◽  
Plant Part ◽  
Fungal Communities ◽  
Plant Tissues ◽  
Microbial Composition ◽  
Plant Parts ◽  
Tropical Watershed

AbstractPlant microbiomes are shaped by forces working at different spatial scales. Environmental factors determine a pool of potential symbionts while host physiochemical factors influence how those microbes associate with distinct plant tissues. Interactions between these scales, however, are seldom considered. Here we analyze epiphytic microbes from nine Hibiscus tiliaceus trees across a steep environmental gradient within a single Hawaiian watershed. At each location we sampled eight microhabitats: leaves, petioles, axils, stems, roots, and litter from the plant, as well as surrounding air and soil. While the composition of microbial communities is driven primarily by microhabitat, this variable predicted more than twice the compositional variance for bacteria compared to fungi. Fungal community compositional dissimilarity increased more rapidly along the gradient than did bacteria. Additionally, the spatial dynamics of fungal communities differed among plant parts, and these differences influenced the distribution patterns and range size of individual taxa. Within plants, microbes were compositionally nested such that aboveground communities contained a subset of the diversity found belowground. Our findings identify potential differences underlying the mechanisms shaping communities of fungi and bacteria associated with plants, and indicate an interaction between assembly mechanisms working simultaneously on different spatial scales.

Plant part and a steep environmental gradient predict plant microbial composition in a tropical watershed

2020 ◽  
Author(s):  
Jared Bernard ◽  
Christopher B. Wall ◽  
Maria S. Costantini ◽  
Randi L. Rollins ◽  
Melissa L. Atkins ◽  
...  
Keyword(s):  
Environmental Gradient ◽  
Plant Part ◽  
Microbial Composition ◽  
Tropical Watershed

scholarly journals Scale-dependent influences of distance and vegetation on the composition of aboveground and belowground tropical fungal communities

2020 ◽  
Author(s):  
Andre Boraks ◽  
Gregory M. Plunkett ◽  
Thomas Doro ◽  
Frazer Alo ◽  
Chanel Sam ◽  
...  
Keyword(s):  
Fungal Community ◽  
Spatial Scales ◽  
Geographic Distance ◽  
Spatial Dynamics ◽  
Spatial Relationship ◽  
Forest Monitoring ◽  
Fungal Communities ◽  
Symbiotic Relationships ◽  
Tree Community ◽  
Relationship Of

AbstractFungi provide essential ecosystem services and engage in a variety of symbiotic relationships with trees. In this study, we investigate the spatial relationship of trees and fungi at a community level. We characterized the spatial dynamics for above- and belowground fungi using a series of forest monitoring plots, at nested spatial scales, located in the tropical South Pacific. Fungal communities exhibited strong distance decay of similarity across our entire sampling range (3–110,000 m), and also at small spatial scales (< 50 m). Unexpectedly, this pattern was inverted at an intermediate scale (3.7–26 km). At large scales (80–110 km), belowground and aboveground fungal communities responded inversely to increasing geographic distance. Aboveground fungal community turnover (beta diversity) was best explained, at all scales, by geographic distance. In contrast, belowground fungal community turnover was best explained by geographic distance at small scales, and tree community composition at large scales. We demonstrate scale-dependent spatial dynamics of fungal communities, synchronous spatial dynamics for trees and fungi, and the varying influence of habitat versus geographic distance in structuring Soil, Selaginella sp., and Understory fungal communities.

scholarly journals Spatial dynamics of a nearshore, micronekton sound-scattering layer

2003 ◽  
Vol 60 (4) ◽  
pp. 899-913 ◽  
Author(s):  
Kelly J Benoit-Bird ◽  
Whitlow W.L Au
Keyword(s):  
Spatial Scales ◽  
Hawaiian Islands ◽  
Food Resource ◽  
Spatial Dynamics ◽  
Acoustic Scattering ◽  
Distribution Patterns ◽  
Time Of Day ◽  
Low Density ◽  
Animal Density ◽  
Wide Range

AbstractIn the Hawaiian Islands, there is a distinct resident community of micronekton, distributed along a narrow band where the upper underwater slopes of the islands meet the oceanic, mesopelagic environment. This mesopelagic boundary community serves as an important food resource to many animals. The goal of this work was to examine spatial heterogeneity of the Hawaiian mesopelagic boundary biomass at a range of scales, in the context of its diel vertical and horizontal migrations. A modified echosounder was used to sample the coasts of three Hawaiian Islands, permitting a range of scales from several meters to several kilometers to be assessed rapidly. The Hawaiian mesopelagic boundary community fits the hierarchical model of patch structure with patches within patches that are part of a larger-scale matrix of patches. Large differences in the overall distribution patterns of the mesopelagic boundary community exist along with a wide range of overall mesopelagic-animal densities. High animal-density locations have boundary-community layers with a large (kilometers) horizontal extent, and low animal-density locations have small (tens of meters), discrete patches. Higher animal-density locations are also more complex than low-density sites, with more levels of patchiness within the same range of spatial scales. Both time of day and distance from shore significantly affected the geometric and density characteristics as well as the distribution of aggregations within the boundary layer. Horizontal and vertical structures of the mesopelagic boundary community are also coupled. In high-density sites, there is strong vertical layering in acoustic-scattering strength while in low-density sites vertical acoustic structure is absent. The differences observed in the distribution of the mesopelagic boundary community at different levels of overall mesopelagic-animal density suggest biological forcing as the dominant mechanism. A description of heterogeneity in the mesopelagic boundary community in Hawaii is the first step in understanding its importance to both neritic and oceanic ecosystems and its potential for linking these two systems.

scholarly journals Adaptive Divergence under Gene Flow along an Environmental Gradient in Two Coexisting Stickleback Species

Genes ◽  
2021 ◽  
Vol 12 (3) ◽  
pp. 435
Author(s):  
Thijs M. P. Bal ◽  
Alejandro Llanos-Garrido ◽  
Anurag Chaturvedi ◽  
Io Verdonck ◽  
Bart Hellemans ◽  
...  
Keyword(s):  
Gene Flow ◽  
Brackish Water ◽  
Environmental Gradient ◽  
Spatial Scales ◽  
Morphological Differentiation ◽  
Genotyping By Sequencing ◽  
Adaptive Divergence ◽  
Linkage Groups ◽  
Closely Related Species ◽  
Genomic Patterns

There is a general and solid theoretical framework to explain how the interplay between natural selection and gene flow affects local adaptation. Yet, to what extent coexisting closely related species evolve collectively or show distinctive evolutionary responses remains a fundamental question. To address this, we studied the population genetic structure and morphological differentiation of sympatric three-spined and nine-spined stickleback. We conducted genotyping-by-sequencing and morphological trait characterisation using 24 individuals of each species from four lowland brackish water (LBW), four lowland freshwater (LFW) and three upland freshwater (UFW) sites in Belgium and the Netherlands. This combination of sites allowed us to contrast populations from isolated but environmentally similar locations (LFW vs. UFW), isolated but environmentally heterogeneous locations (LBW vs. UFW), and well-connected but environmentally heterogenous locations (LBW vs. LFW). Overall, both species showed comparable levels of genetic diversity and neutral genetic differentiation. However, for all three spatial scales, signatures of morphological and genomic adaptive divergence were substantially stronger among populations of the three-spined stickleback than among populations of the nine-spined stickleback. Furthermore, most outlier SNPs in the two species were associated with local freshwater sites. The few outlier SNPs that were associated with the split between brackish water and freshwater populations were located on one linkage group in three-spined stickleback and two linkage groups in nine-spined stickleback. We conclude that while both species show congruent evolutionary and genomic patterns of divergent selection, both species differ in the magnitude of their response to selection regardless of the geographical and environmental context.

scholarly journals Detection of areas of endemism on two spatial scales using Parsimony Analysis of Endemicity (PAE): the Neotropical region and the Atlantic Forest

2008 ◽  
Vol 8 (4) ◽  
pp. 33-42 ◽  
Author(s):  
Mário Sérgio Sigrist ◽  
Claudio José Barros de Carvalho
Keyword(s):  
Atlantic Forest ◽  
Spatial Scales ◽  
Distribution Patterns ◽  
Neotropical Region ◽  
Conservation Priorities ◽  
Parsimony Analysis ◽  
Areas Of Endemism ◽  
Endemic Areas ◽  
Analysis Scale ◽  
Parsimony Analysis Of Endemicity

An important biological challenge today is the conservation of biodiversity. Biogeography, the study of the distribution patterns of organisms, is an important tool for this challenge. Endemism, the co-occurrence of several species unique to the same area, has important implications for the preservation of biodiversity, since many areas of endemism are also areas with large human impact. More rigorously defined, areas of endemism are historical units of distributional congruence of monophyletic taxa. These areas often assumed to be due to nonrandom historical events that favored conditions associated with high rates of speciation. Thus, understanding endemism and the delimitation of endemic areas has important implications for conservation. Today, most studies delimit areas of endemism by superimposing maps of distribution for various species. This approach suffers from arbitrary delimitations, however, when a great distributional data is used. In this paper we used the method of Parsimony Analysis of Endemicity (PAE) based on georeferenced quadrats in order to delimit areas of endemism. This modality of the method is important due to its testable nature and can also be used to infer area relationships. We applied the method to raw distributional data from 19 unrelated taxa to delimit general patterns of endemism in the Neotropical Region and in the Atlantic forest domain using different grid scales. Neotropical areas found are comprised over the Panama region, northern Andean region and the Atlantic forest. Atlantic forest showed a major division into two distinct components (northern x southern). Endemic areas delimited using smaller scale grids on the Atlantic forest should be considered for conservation priorities once they showed endemism at regional and local scales. The results were also compared to other studies using different taxa and methods. Finally, some considerations on the analysis scale and future perspectives of the method are presented.

scholarly journals Diversity and distribution patterns of the Oligocene and Miocene decapod crustaceans (Crustacea: Malacostraca) of the Western and Central Paratethys

2016 ◽  
Vol 67 (5) ◽  
pp. 471-494 ◽  
Author(s):  
Matúš Hyžný
Keyword(s):  
Spatial Scales ◽  
Three Dimensional ◽  
Decapod Crustacean ◽  
Distribution Patterns ◽  
Mediterranean Area ◽  
Homogeneous Distribution ◽  
Decapod Crustaceans ◽  
Central Paratethys ◽  
The North ◽  
Marine Habitats

AbstractDecapod associations have been significant components of marine habitats throughout the Cenozoic when the major diversification of the group occurred. In this respect, the circum-Mediterranean area is of particular interest due to its complex palaeogeographic history. During the Oligo-Miocene, it was divided in two major areas, Mediterranean and Paratethys. Decapod crustaceans from the Paratethys Sea have been reported in the literature since the 19thcentury, but only recent research advances allow evaluation of the diversity and distribution patterns of the group. Altogether 176 species-level taxa have been identified from the Oligocene and Miocene of the Western and Central Paratethys. Using the three-dimensional NMDS analysis, the composition of decapod crustacean faunas of the Paratethys shows significant differences through time. The Ottnangian and Karpatian decapod associations were similar to each other both taxonomically and in the mode of preservation, and they differed taxonomically from the Badenian ones. The Early Badenian assemblages also differed taxonomically from the Late Badenian ones. The time factor, including speciation, immigration from other provinces and/or (local or global) extinction, can explain temporal differences among assemblages within the same environment. High decapod diversity during the Badenian was correlated with the presence of reefal settings. The Badenian was the time with the highest decapod diversity, which can, however, be a consequence of undersampling of other time slices. Whereas the Ottnangian and Karpatian decapod assemblages are preserved virtually exclusively in the siliciclastic “Schlier”-type facies that originated in non-reefal offshore environments, carbonate sedimentation and the presence of reefal environments during the Badenian in the Central Paratethys promoted thriving of more diverse reef-associated assemblages. In general, Paratethyan decapods exhibited homogeneous distribution during the Oligo-Miocene among the basins in the Paratethys. Based on the co-occurrence of certain decapod species, migration between the Paratethys and the North Sea during the Early Miocene probably occurred via the Rhine Graben. At larger spatial scales, our results suggest that the circum-Mediterranean marine decapod taxa migrated in an easterly direction during the Oligocene and/or Miocene, establishing present-day decapod communities in the Indo-West Pacific.

scholarly journals Spatial interactions between saithe (Pollachius virens) and hake (Merluccius merluccius) in the North Sea

2014 ◽  
Vol 71 (6) ◽  
pp. 1342-1355 ◽  
Author(s):  
Xochitl Cormon ◽  
Christophe Loots ◽  
Sandrine Vaz ◽  
Youen Vermard ◽  
Paul Marchal
Keyword(s):  
North Sea ◽  
Linear Models ◽  
Spatial Dynamics ◽  
Distribution Patterns ◽  
Trawl Survey ◽  
Spatial Interactions ◽  
Merluccius Merluccius ◽  
The North ◽  
Sediment Types ◽  
The North Sea

Spatial interactions between saithe (Pollachius virens) and hake (Merluccius merluccius) were investigated in the North Sea. Saithe is a well-established species in the North Sea, while occurrence of the less common hake has recently increased in the area. Spatial dynamics of these two species and their potential spatial interactions were explored using binomial generalized linear models (GLM) applied to the International Bottom Trawl Survey (IBTS) data from 1991 to 2012. Models included different types of variables: (i) abiotic variables including sediment types, temperature, and bathymetry; (ii) biotic variables including potential competitors and potential preys presence; and (iii) spatial variables. The models were reduced and used to predict and map probable habitats of saithe, hake but also, for the first time in the North Sea, the distribution of the spatial overlap between these two species. Changes in distribution patterns of these two species and of their overlap were also investigated by comparing species’ presence and overlap probabilities predicted over an early (1991–1996) and a late period (2007–2012). The results show an increase in the probability over time of the overlap between saithe and hake along with an expansion towards the southwest and Scottish waters. These shifts follow trends observed in temperature data and might be indirectly induced by climate changes. Saithe, hake, and their overlap are positively influenced by potential preys and/or competitors, which confirms spatial co-occurrence of the species concerned and leads to the questions of predator–prey relationships and competition. Finally, the present study provides robust predictions concerning the spatial distribution of saithe, hake, and of their overlap in the North Sea, which may be of interest for fishery managers.

scholarly journals Vineyard ecosystems are structured and distinguished by fungal communities impacting the flavour and quality of wine

2019 ◽  
Author(s):  
Di Liu ◽  
Qinglin Chen ◽  
Pangzhen Zhang ◽  
Deli Chen ◽  
Kate S. Howell
Keyword(s):  
Regional Distribution ◽  
Distribution Patterns ◽  
Wine Fermentation ◽  
Fungal Communities ◽  
Soil Microbiome ◽  
Soil Conditions ◽  
Wine Aroma ◽  
Wine Production ◽  
Microbial Distribution

AbstractThe flavours of foods and beverages are formed by the agricultural environment where the plants are grown. In the case of wine, the location and environmental features of the vineyard site imprint the wine with distinctive aromas and flavours. Microbial growth and metabolism play an integral role in wine production from the vineyard to the winery, by influencing grapevine health, wine fermentation, and the flavour, aroma and quality of finished wines. The mechanism by which microbial distribution patterns drive wine metabolites is unclear and while flavour has been correlated with bacterial composition for red wines, bacterial activity provides a minor biochemical conversion in wine fermentation. Here, we collected samples across six distinct winegrowing areas in southern Australia to investigate regional distribution patterns of both fungi and bacteria and how this corresponds with wine aroma compounds. Results show that soil and must microbiota distinguish winegrowing regions and are related to wine chemical profiles. We found a strong relationship between microbial and wine metabolic profiles, and this relationship was maintained despite differing abiotic drivers (soil properties and weather/ climatic measures). Notably, fungal communities played the principal role in shaping wine aroma profiles and regional distinctiveness. We found that the soil microbiome is a potential source of grape- and must-associated fungi, and therefore the weather and soil conditions could influence the wine characteristics via shaping the soil fungal community compositions. Our study describes a comprehensive scenario of wine microbial biogeography in which microbial diversity responds to surrounding environments and ultimately sculpts wine aromatic characteristics. These findings provide perspectives for thoughtful human practices to optimise food and beverage flavour and composition through understanding of fungal activity and abundance.

scholarly journals Optimized iLID membrane anchors for local optogenetic protein recruitment

2020 ◽  
Author(s):  
Dean E. Natwick ◽  
Sean R. Collins
Keyword(s):  
Plasma Membrane ◽  
Fusion Proteins ◽  
Protein Localization ◽  
Spatial Scales ◽  
Spatial Dynamics ◽  
Biochemical Networks ◽  
Signaling Networks ◽  
Protein Diffusion ◽  
Spatiotemporal Resolution ◽  
Protein Recruitment

AbstractOptogenetic protein dimerization systems are powerful tools to investigate the biochemical networks that cells use to make decisions and coordinate their activities. These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane. In this way, the role of individual proteins within signaling networks can be examined with high spatiotemporal resolution. Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long timescales. Here, we address these challenges within the iLID system with alternative membrane anchoring domains and fusion configurations. Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics. Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, and efficient recruitment over wider gene expression ranges. We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies. Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.SignificanceOptogenetic light-inducible dimer systems, such as iLID, offer the ability to examine cellular signaling networks on second timescales and micrometer spatial scales. Confined light stimulation can recruit proteins to subcellular regions of the plasma membrane, and local signaling effects can be observed. Here, we report alternative iLID fusion proteins that display stronger and more spatially confined membrane recruitment. We also define optogenetic component expression regimes for optimal recruitment and show that slow-diffusing iLID proteins allow more robust recruitment in cell populations with heterogenous expression. These tools should improve the spatiotemporal control and reproducibility of optogenetic protein recruitment to the plasma membrane.

scholarly journals Are Distribution Patterns Correlated with Plant Traits?

2021 ◽  
Author(s):  
◽  
Benjamin Magana-Rodriguez
Keyword(s):  
Life History ◽  
Leaf Area ◽  
Spatial Patterns ◽  
Life History Traits ◽  
Multiple Scales ◽  
Spatial Scales ◽  
Regional Scale ◽  
Distribution Patterns ◽  
Spatial Arrangement ◽  
Scaling Relationship

<p>The current crisis in loss of biodiversity requires rapid action. Knowledge of species' distribution patterns across scales is of high importance in determining their current status. However, species display many different distribution patterns on multiple scales. A positive relationship between regional (broad-scale) distribution and local abundance (fine-scale) of species is almost a constant pattern in macroecology. Nevertheless interspecific relationships typically contain much scatter. For example, species that possess high local abundance and narrow ranges, or species that are widespread, but locally rare. One way to describe these spatial features of distribution patterns is by analysing the scaling properties of occupancy (e.g., aggregation) in combination with knowledge of the processes that are generating the specific spatial pattern (e.g., reproduction, dispersal, and colonisation). The main goal of my research was to investigate if distribution patterns correlate with plant life-history traits across multiple scales. First, I compared the performance of five empirical models for their ability to describe the scaling relationship of occupancy in two datasets from Molesworth Station, New Zealand. Secondly, I analysed the association between spatial patterns and life history traits at two spatial scales in an assemblage of 46 grassland species in Molesworth Station. The spatial arrangement was quantified using the parameter k from the Negative Binomial Distribution (NBD). Finally, I investigated the same association between spatial patterns and life-history traits across local, regional and national scales, focusing in one of the most diverse families of plant species in New Zealand, the Veronica sect. Hebe (Plantaginaceae). The spatial arrangement was investigated using the mass fractal dimension. Cross-species correlations and phylogenetically independent contrasts were used to investigate the relationships between plant life-history traits and spatial patterns on both data bases. There was no superior occupancy-area model overall for describing the scaling relationship, however the results showed that a variety of occupancy-area models can be fit to different data sets at diverse spatial scales using nonlinear regression. Additionally, here I showed that it is possible to deduce and extrapolate information on occupancy at fine scales from coarse-scale data. For the 46 plantassemblage in Molesworth Station, Specific leaf area (SLA) exhibits a positive association with aggregation in cross-species analysis, while leaf area showed a negative association, and dispersule mass a positive correlation with degree of aggregation in phylogenetic contrast analysis at a local-scale (20 × 20 m resolution). Plant height was the only life-history trait that was associated with degree of aggregation at a regional-scale (100 × 60 mresolution). For the Veronica sect. Hebe dataset, leaf area showed a positive correlation with aggregation while specific leaf area showed a negative correlation with aggregation at a fine local-scale (2.5-60 m resolution). Inflorescence length, breeding system and leaf area showed a negative correlation with degree of aggregation at a regional-scale (2.5-20 km resolution). Height was positively associated with aggregation at national-scale (20-100 km resolution). Although life-history traits showed low predictive ability in explaining aggregation throughout this thesis, there was a general pattern about which processes and traits were important at different scales. At local scales traits related to dispersal and completion such as SLA , leaf area, dispersule mass and the presence of structures in seeds for dispersal, were important; while at regional scales traits related to reproduction such as breeding system, inflorescence length and traits related to dispersal (seed mass) were significant. At national scales only plant height was important in predicting aggregation. Here, it was illustrated how the parameters of these scaling models capture an important aspect of spatial pattern that can be related to other macroecological relationships and the life-history traits of species. This study shows that when several scales of analysis are considered, we can improve our understanding about the factors that are related to species' distribution patterns.</p>

Sign in / Sign up

Export Citation Format

Share Document