scholarly journals Molecular Analysis of Human and Canine Staphylococcus aureus Strains Reveals Distinct Extended-Host-Spectrum Genotypes Independent of Their Methicillin Resistance

2012 ◽  
Vol 79 (2) ◽  
pp. 655-662 ◽  
Author(s):  
S. Vincze ◽  
I. Stamm ◽  
S. Monecke ◽  
P. A. Kopp ◽  
T. Semmler ◽  
...  
Keyword(s):  
Staphylococcus Aureus ◽  
Microarray Analysis ◽  
Dna Microarray ◽  
Methicillin Resistance ◽  
Convenience Sample ◽  
Genetic Traits ◽  
Content Type ◽  
Dna Microarray Analysis ◽  
Wide Range ◽  
Host Spectrum

ABSTRACTStaphylococcus aureuscauses a wide range of infectious diseases in humans and various animal species. Although presumptive host-specific factors have been reported, certain genetic lineages seem to lack specific host tropism, infecting a broad range of hosts. Such Extended-Host-Spectrum Genotypes (EHSGs) have been described in canine infections, caused by common regional human methicillin-resistantS. aureus(MRSA) lineages. However, information is scarce about the occurrence of methicillin-susceptibleS. aureus(MSSA) EHSGs. To gain deeper insight into EHSG MSSA and EHSG MRSA of human and canine origin, a comparative molecular study was carried out, including a convenience sample of 120 currentS. aureus(70 MRSA and 50 MSSA) isolates obtained from infected dogs.spatyping revealed 48 differentspatypes belonging to 16 different multilocus sequence typing clonal complexes (MLST-CCs). Based on these results, we further compared a subset of canine (n= 48) and human (n= 14) strains, including isolates of clonal complexes CC5, CC22, CC8, CC398, CC15, CC45, and CC30 by macrorestriction (pulsed-field gel electrophoresis [PFGE]) and DNA-microarray analysis. None of the methods employed was able to differentiate between clusters of human and canine strains independently of their methicillin resistance. In contrast, DNA-microarray analysis revealed 79% of the 48 canine isolates as carriers of the bacteriophage-encoded human-specific immune evasion cluster (IEC). In conclusion, the high degree of similarity between human and canineS. aureusstrains regardless of whether they are MRSA or MSSA envisions the existence of common genetic traits that enable these strains as EHSGs, challenging the concept of resistance-driven spillover of MRSA.

Novel Stratification Scheme for AML Based on a Large-Scale DNA Microarray Analysis of CD133-Positive Blasts.

Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 2043-2043
Author(s):  
Hiroyuki Mano ◽  
Yoshihiro Yamashita
Keyword(s):  
Gene Expression ◽  
Gene Expression Profile ◽  
Microarray Analysis ◽  
Dna Microarray ◽  
Expression Profile ◽  
Treatment Strategy ◽  
Large Scale ◽  
Dna Microarray Analysis ◽  
Wide Range ◽  
Microarray Analyses

Abstract AML is a clonal disorder of immature hematopoietic blasts and has a variable clinical outcome. Current classification of AML is based predominantly on the cytogenetic abnormalities and morphology of the malignant blasts and is not always helpful for optimization of treatment strategy. It is, for instance, very difficult to predict the prognosis of AML patients with a normal karyotype, who constitute ~50% of the AML population. DNA microarray analysis has the potential to provide a novel stratification scheme for AML patients, which is based on gene expression profile, and might help to predict the prognosis of, and optimize the treatment strategy for, each affected individual. However, leukemic blasts derived from bone marrow (BM) of AML-related disorders, are not homogeneous. The blasts may constitute from 20% to almost 100% of mononuclear cells (MNCs) in the marrow. Furthermore, given that many leukemic blasts possess the ability to differentiate to a certain extent, the marrow of AML patients contains not only the immature blasts (leukemic stem clone) but also differentiated blasts. A simple comparison of BM MNCs among heterogeneous AML patients is thus likely to reveal a large number of changes in gene expression that only reflect differences either in the percentage of blasts or in the differentiation ability of the blasts. To minimize such population-shift effects in microarray analyses, we established a large-scale cell depository “Blast Bank” for the storage of CD133 (AC133)-positive hematopoietic stem cell-like fractions from individuals with a wide range of hematopoietic disorders. In the present study, we have used Affymetrix HGU133 A&B microarrays to measure the expression profiles of ~33,000 genes in the Blast Bank specimens of 99 adults with AML-related disorders: 83 individuals with AML and 16 patients in the RAEB stage of MDS. In contrast to the previous microarray analyses of BM MNCs of AML, unsupervised hierarchical clustering of the subjects based on the expression profile did not separate the patients into FAB subtype-matched subgroups. Comparison of gene expression profile between the long-time and short-time survivors has identified a small number of outcome-related genes. Supervised class prediction, based on these genes, with k-nearest neighbor method or Cox proportional hazard model both succeeded to clearly separate individuals into subgroups with statistically distinct prognoses. Our analysis may pave a way toward the expression profile-based novel stratification scheme for AML.

scholarly journals Use of the Chinchilla Model for Nasopharyngeal Colonization To Study Gene Expression by Moraxella catarrhalis

2011 ◽  
Vol 80 (3) ◽  
pp. 982-995 ◽  
Author(s):  
Todd C. Hoopman ◽  
Wei Liu ◽  
Stephanie N. Joslin ◽  
Christine Pybus ◽  
Jennifer L. Sedillo ◽  
...  
Keyword(s):  
Gene Expression ◽  
Microarray Analysis ◽  
Dna Microarray ◽  
Moraxella Catarrhalis ◽  
Expression Patterns ◽  
Surface Proteins ◽  
Content Type ◽  
Dna Microarray Analysis ◽  
Study Gene Expression

Young adult chinchillas were atraumatically inoculated withMoraxella catarrhalisvia the nasal route. Detailed histopathologic examination of nasopharyngeal tissues isolated from theseM. catarrhalis-infected animals revealed the presence of significant inflammation within the epithelium. Absence of similar histopathologic findings in sham-inoculated animals confirmed thatM. catarrhaliswas exposed to significant host-derived factors in this environment. Twenty-four hours after inoculation, viableM. catarrhalisorganisms were recovered from the nasal cavity and nasopharynx of the animals in numbers sufficient for DNA microarray analysis. More than 100M. catarrhalisgenes were upregulatedin vivo, including open reading frames (ORFs) encoding proteins that are involved in a truncated denitrification pathway or in the oxidative stress response, as well as several putative transcriptional regulators. Additionally, 200M. catarrhalisgenes were found to be downregulated when this bacterium was introduced into the nasopharynx. These downregulated genes included ORFs encoding several well-characterizedM. catarrhalissurface proteins including Hag, McaP, and MchA1. Real-time reverse transcriptase PCR (RT-PCR) was utilized as a stringent control to validate the results ofin vivogene expression patterns as measured by DNA microarray analysis. Inactivation of one of the genes (MC ORF 1550) that was upregulatedin vivoresulted in a decrease in the ability ofM. catarrhalisto survive in the chinchilla nasopharynx over a 3-day period. This is the first evaluation of global transcriptome expression byM. catarrhaliscellsin vivo.

scholarly journals The Potential of 2-aza-8-Oxohypoxanthine as a Cosmetic Ingredient

Cosmetics ◽  
2021 ◽  
Vol 8 (3) ◽  
pp. 60
Author(s):  
Hisae Aoshima ◽  
Masayuki Ito ◽  
Rinta Ibuki ◽  
Hirokazu Kawagishi
Keyword(s):  
Gene Expression ◽  
Cell Proliferation ◽  
Microarray Analysis ◽  
Dna Microarray ◽  
Cell Activation ◽  
Skin Barrier ◽  
Efficacy Evaluation ◽  
Activation Effect ◽  
Expression Levels ◽  
Dna Microarray Analysis

In this study, we verified the effects of 2-aza-8-oxohypoxanthine (AOH) on human epidermal cell proliferation by performing DNA microarray analysis. Cell proliferation was assessed using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay, which measures mitochondrial respiration in normal human epidermal keratinocyte (NHEK) cells. Gene expression levels were determined by DNA microarray analysis of 177 genes involved in skin aging and disease. AOH showed a significant increase in cell viability at concentrations between 7.8 and 31.3 μg/mL and a significant decrease at concentrations above 250 μg/mL. DNA microarray analysis showed that AOH significantly increased the gene expression of CLDN1, DSC1, DSG1, and CDH1 (E-cadherin), which are involved in intercellular adhesion and skin barrier functioning. AOH also up-regulated the expression of KLK5, KLK7, and SPIMK5, which are proteases involved in stratum corneum detachment. Furthermore, AOH significantly stimulated the expression of KRT1, KRT10, TGM1, and IVL, which are considered general differentiation indicators, and that of SPRR1B, a cornified envelope component protein. AOH exerted a cell activation effect on human epidermal cells. Since AOH did not cause cytotoxicity, it was considered that the compound had no adverse effects on the skin. In addition, it was found that AOH stimulated the expression levels of genes involved in skin barrier functioning by DNA microarray analysis. Therefore, AOH has the potential for practical use as a cosmetic ingredient. This is the first report of efficacy evaluation tests performed for AOH.

scholarly journals A Putative Cro-Like Repressor Contributes to Arylomycin Resistance in Staphylococcus aureus

2015 ◽  
Vol 59 (6) ◽  
pp. 3066-3074 ◽  
Author(s):  
Arryn Craney ◽  
Floyd E. Romesberg
Keyword(s):  
Staphylococcus Aureus ◽  
Ex Vivo ◽  
Transcriptional Regulator ◽  
Signal Peptidase ◽  
Health Concern ◽  
Resistant Bacteria ◽  
Type I ◽  
Wall Teichoic Acid ◽  
Content Type ◽  
Wide Range

ABSTRACTAntibiotic-resistant bacteria are a significant public health concern and motivate efforts to develop new classes of antibiotics. One such class of antibiotics is the arylomycins, which target type I signal peptidase (SPase), the enzyme responsible for the release of secreted proteins from their N-terminal leader sequences. Despite the essentiality, conservation, and relative accessibility of SPase, the activity of the arylomycins is limited against some bacteria, including the important human pathogenStaphylococcus aureus. To understand the origins of the limited activity againstS. aureus, we characterized the susceptibility of a panel of strains to two arylomycin derivatives, arylomycin A-C16and its more potent analog arylomycin M131. We observed a wide range of susceptibilities to the two arylomycins and found that resistant strains were sensitized by cotreatment with tunicamycin, which inhibits the first step of wall teichoic acid synthesis. To further understand howS. aureusresponds to the arylomycins, we profiled the transcriptional response ofS. aureusNCTC 8325 to growth-inhibitory concentrations of arylomycin M131 and found that it upregulates the cell wall stress stimulon (CWSS) and an operon consisting of a putative transcriptional regulator and three hypothetical proteins. Interestingly, we found that mutations in the putative transcriptional regulator are correlated with resistance, and selection for resistanceex vivodemonstrated that mutations in this gene are sufficient for resistance. The results begin to elucidate howS. aureuscopes with secretion stress and how it evolves resistance to the inhibition of SPase.

scholarly journals DNA Microarray Analysis Identifies CKS2 and LEPR as Potential Markers of Meningioma Recurrence

2011 ◽  
Vol 16 (10) ◽  
pp. 1440-1450 ◽  
Author(s):  
Francesca Menghi ◽  
Francesca N. Orzan ◽  
Marica Eoli ◽  
Mariangela Farinotti ◽  
Emanuela Maderna ◽  
...  
Keyword(s):  
Microarray Analysis ◽  
Dna Microarray ◽  
Dna Microarray Analysis ◽  
Meningioma Recurrence

scholarly journals DNA microarray analysis of global gene regulation by A-factor in Streptomyces griseus

Microbiology ◽  
2009 ◽  
Vol 155 (7) ◽  
pp. 2197-2210 ◽  
Author(s):  
Hirofumi Hara ◽  
Yasuo Ohnishi ◽  
Sueharu Horinouchi
Keyword(s):  
Gene Expression ◽  
Microarray Analysis ◽  
Dna Microarray ◽  
Streptomyces Griseus ◽  
Exponential Growth Phase ◽  
Mobility Shift ◽  
Dna Microarray Analysis ◽  
Regulatory Cascade ◽  
Transcriptional Units ◽  
Inducible Genes

A-factor (2-isocapryloyl-3R-hydroxymethyl-γ-butyrolactone) is a microbial hormone that triggers morphological differentiation and secondary metabolism in Streptomyces griseus. The effects of A-factor on global gene expression were determined by DNA microarray analysis of transcriptomes obtained with the A-factor-deficient mutant ΔafsA. A-factor was added at a concentration of 25 ng ml−1 to mutant ΔafsA at the middle of the exponential growth phase, and RNA samples were prepared from the cells grown after A-factor addition for a further 5, 15 and 30 min, and 1, 2, 4, 8 and 12 h. The effects of A-factor on transcription of all protein-coding genes of S. griseus were evaluated by comparison of the transcriptomes with those obtained from cells grown in the absence of A-factor. Analysis of variance among the transcriptomes revealed that 477 genes, which were dispersed throughout the chromosome, were differentially expressed during the 12 h after addition of A-factor, when evaluated by specific criteria. Quality threshold clustering analysis with regard to putative polycistronic transcriptional units and levels of upregulation predicted that 152 genes belonging to 74 transcriptional units were probable A-factor-inducible genes. Competitive electrophoretic mobility shift assays using DNA fragments including putative promoter regions of these 74 transcriptional units suggested that AdpA bound 37 regions to activate 72 genes in total. Many of these A-factor-inducible genes encoded proteins of unknown function, suggesting that the A-factor regulatory cascade of S. griseus affects gene expression at a specific time point more profoundly than expected.

scholarly journals DNA microarray analysis of normal rat kidney epithelial cells treated with cadmium

2011 ◽  
Vol 36 (1) ◽  
pp. 127-129 ◽  
Author(s):  
Maki Tokumoto ◽  
Tomoaki Ohtsu ◽  
Akiko Honda ◽  
Yasuyuki Fujiwara ◽  
Hisamitsu Nagase ◽  
...  
Keyword(s):  
Epithelial Cells ◽  
Microarray Analysis ◽  
Dna Microarray ◽  
Rat Kidney ◽  
Dna Microarray Analysis ◽  
Normal Rat ◽  
Kidney Epithelial Cells
Sign in / Sign up

Export Citation Format

Share Document