A NewN-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei
ABSTRACTSponges harbor a remarkable diversity of microbial symbionts in which signal molecules can accumulate and enable cell-cell communication, such as quorum sensing (QS). Bacteria capable of QS were isolated from marine sponges; however, an extremely small fraction of the sponge microbiome is amenable to cultivation. We took advantage of community genome assembly and binning to investigate the uncultured majority of sponge symbionts. We identified a completeN-acyl-homoserine lactone (AHL)-QS system (designated TswIR) and seven partialluxIhomologues in the microbiome ofTheonella swinhoei. The TswIR system was novel and shown to be associated with an alphaproteobacterium of the orderRhodobacterales, here termedRhodobacteralesbacterium TS309. ThetswIgene, when expressed inEscherichia coli, produced three AHLs, two of which were also identified in aT. swinhoeisponge extract. The taxonomic affiliation of the 16S rRNA ofRhodobacteralesbacterium TS309 to a sponge-coral specific clade, its enrichment in sponge versus seawater and marine sediment samples, and the presence of sponge-specific features, such as ankyrin-like domains and tetratricopeptide repeats, indicate a likely symbiotic nature of this bacterium.