scholarly journals Draft Genome Sequences of Pectobacterium carotovorum subsp. actinidiae ICMP 19971 and ICMP 19972, Two Strains Isolated from Actinidia chinensis with Symptoms of Summer Canker in South Korea

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Sandra B. Visnovsky ◽  
Preetinanda Panda ◽  
Robert Taylor ◽  
Andrew R. Pitman
Keyword(s):  
New Zealand ◽  
South Korea ◽  
Draft Genome ◽  
Causal Agent ◽  
Pectobacterium Carotovorum ◽  
Actinidia Chinensis ◽  
Genome Sequences ◽  
Genetic Traits ◽  
Content Type ◽  
Carotovorum Subsp

ABSTRACT Pectobacterium carotovorum subsp. actinidiae is the causal agent of summer canker in kiwifruit plants in South Korea. We report here the draft genome sequences of two P. carotovorum subsp. actinidiae strains, ICMP 19971 and ICMP 19972, which were originally isolated from Actinidia chinensis with symptoms of summer canker. These genome sequences will aid in the identification of genetic traits associated with their unusual capacity to cause canker and help understanding of the threat these exotic enterobacteria pose to the New Zealand kiwifruit industry.

scholarly journals Draft Genome Sequences of Lysostaphin-Resistant (K07-204) and Lysostaphin-Susceptible (K07-561) Staphylococcus aureus Sequence Type 72 Strains Isolated from Patients in South Korea

2020 ◽  
Vol 9 (49) ◽  
Author(s):  
Nayab Batool ◽  
Kwan Soo Ko ◽  
Akhilesh Kumar Chaurasia ◽  
Kyeong Kyu Kim
Keyword(s):  
Staphylococcus Aureus ◽  
South Korea ◽  
Genome Sequencing ◽  
Draft Genome ◽  
Sequence Type ◽  
Genome Sequences ◽  
Content Type ◽  
Subtractive Genomics ◽  
Draft Genome Sequencing ◽  
Different Levels

ABSTRACT Methicillin-resistant Staphylococcus aureus sequence type 72 (ST72) is prevalent in South Korea and has shown resistance to multiple antimicrobials. ST72 isolates display different levels of resistance to the antistaphylococcal lysostaphin. Draft genome sequencing of ST72 human isolates exhibiting lysostaphin resistance or susceptibility was performed to better understand the mechanism of lysostaphin resistance using subtractive genomics.

scholarly journals Draft Genome Sequences of Seven Extended-Spectrum β-Lactamase-Producing Escherichia coli Strains Isolated from New Zealand Waterways

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Sara A. Burgess ◽  
Margaux Francois ◽  
Anne C. Midwinter ◽  
Patrick J. Biggs
Keyword(s):  
Escherichia Coli ◽  
New Zealand ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Genome Sequences ◽  
Resistant Genotype ◽  
Content Type ◽  
Esbl Gene ◽  
Extended Spectrum ◽  
The Mean

ABSTRACT Draft genomes of seven extended-spectrum β-lactamase (ESBL)-producing Escherichia coli strains recovered from New Zealand waterways are described. The mean genome size was 5.1 Mb, with 4,724 coding sequences. All genomes contained the ESBL gene blaCTX-M, and one carried a plasmid-mediated AmpC gene, blaCMY-2. A multidrug-resistant genotype was detected in three isolates.

scholarly journals Draft Genome Sequences of Eight Strains of Campylobacter helveticus Isolated from Cats and a Dog in New Zealand

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
Krunoslav Bojanić ◽  
Anne C. Midwinter ◽  
Els Acke ◽  
Jonathan C. Marshall ◽  
Angela J. Cornelius ◽  
...  
Keyword(s):  
New Zealand ◽  
Dna Sequences ◽  
Type Strain ◽  
Draft Genome ◽  
Companion Animals ◽  
Gc Content ◽  
Genome Sequences ◽  
Content Type

The draft genome sequences for eight isolates of Campylobacter helveticus isolated from companion animals are described and compared with that of the type strain. On average, the genomes are 1,825,025 bp long and have a GC content of 34.4% and 1,885 coding DNA sequences (CDSs). CRISPRs were detected in only one isolate and phages in none.

scholarly journals Draft Genome Sequence of Pectobacterium carotovorum subsp. carotovorum ATCC 39048, a Carbapenem-Producing Phytopathogen

2018 ◽  
Vol 7 (5) ◽  
Author(s):  
Rita E. Monson ◽  
Katherine Jones ◽  
George P. C. Salmond
Keyword(s):  
Carboxylic Acid ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Pectobacterium Carotovorum ◽  
Content Type ◽  
Lactam Antibiotic ◽  
Carotovorum Subsp

Pectobacterium carotovorum subsp. carotovorum ATCC 39048 was originally isolated in the 1980s and studied because it produced the β-lactam antibiotic 1-carbapen-2-em-3-carboxylic acid.

scholarly journals Draft Genome Sequences of Three Isolates of Coniothyrium glycines, Causal Agent of Red Leaf Blotch of Soybean

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Trenna Blagden ◽  
Andres Espindola ◽  
Kitty Cardwell ◽  
Alejandro Ortega-Beltran ◽  
Ranajit Bandyopadhyay
Keyword(s):  
Draft Genome ◽  
Causal Agent ◽  
Biological Agent ◽  
Detection Methods ◽  
Genomic Information ◽  
Genome Sequences ◽  
Content Type ◽  
Leaf Blotch ◽  
Molecular Genotyping

Coniothyrium glycines, the causal agent of red leaf blotch in soybeans, is considered a high-consequence biological agent. With limited genomic information known, there are no molecular genotyping or detection methods available. We report the draft genome sequences of three C. glycines isolates, greatly enhancing our knowledge of this species.

scholarly journals Draft Genome Sequences of Two Xanthomonas fragariae Strains

2021 ◽  
Vol 10 (16) ◽  
Author(s):  
Austin Herbert ◽  
Hehe Wang ◽  
Christopher Saski ◽  
William Turechek
Keyword(s):  
Leaf Spot ◽  
Draft Genome ◽  
Causal Agent ◽  
Angular Leaf Spot ◽  
Genome Sequences ◽  
Illumina Hiseq ◽  
Short Read ◽  
Pathogen Evolution ◽  
Content Type ◽  
Xanthomonas Fragariae

Xanthomonas fragariae is the causal agent of angular leaf spot of strawberry. Short-read sequences were generated for two X. fragariae strains with different virulence phenotypes on the Illumina HiSeq 2000 platform. The genome sequences will contribute to a better understanding of pathogen evolution and the genes contributing to virulence in X. fragariae .

scholarly journals Draft Whole-Genome Sequences of Three Diarrheagenic Escherichia coli Strains Isolated from Farmed Deer in New Zealand

2018 ◽  
Vol 6 (16) ◽  
pp. e00300-18
Author(s):  
A. Springer Browne ◽  
Patrick J. Biggs ◽  
Alice Elliott ◽  
Patricia Jaros ◽  
Nigel P. French ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
New Zealand ◽  
Cervus Elaphus ◽  
Red Deer ◽  
Draft Genome ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli ◽  
Diarrheagenic Escherichia Coli

ABSTRACT Escherichia coli bacteria commonly colonize the gastrointestinal tracts of farmed ruminants. Cattle are a well-recognized reservoir of zoonotic E. coli; we report here, however, the draft genome sequences of three diarrheagenic E. coli strains isolated from farmed red deer (Cervus elaphus) in the Manawatu region of New Zealand.

scholarly journals Draft Genome Sequences for Canadian Isolates of Pectobacterium carotovorum subsp. brasiliense with Weak Virulence on Potato

2015 ◽  
Vol 3 (2) ◽  
Author(s):  
Xiang (Sean) Li ◽  
Kat (Xiaoli) Yuan ◽  
Jeff Cullis ◽  
C. André Lévesque ◽  
Wen Chen ◽  
...  
Keyword(s):  
Draft Genome ◽  
Pectobacterium Carotovorum ◽  
Genome Sequences ◽  
Carotovorum Subsp

scholarly journals Draft Genome Assemblies of Two Cryptosporidium hominis Isolates from New Zealand

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
M. A. Knox ◽  
J. C. Garcia-R ◽  
D. T. S. Hayman
Keyword(s):  
New Zealand ◽  
Gastrointestinal Disease ◽  
Draft Genome ◽  
Protozoan Parasite ◽  
Clinical Isolates ◽  
Whole Genome ◽  
Genome Sequences ◽  
Cryptosporidium Hominis ◽  
Content Type ◽  
Genome Assemblies

Cryptosporidium hominis is a protozoan parasite that causes gastrointestinal disease in humans worldwide. Here, we report on draft whole-genome sequences of two clinical isolates of C. hominis that were purified from patients with cryptosporidiosis in New Zealand.

scholarly journals Draft Genome Sequence of the Necrotrophic Plant-Pathogenic Bacterium Pectobacterium carotovorum subsp. carotovorum Strain LMG 2410

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
William M. Rooney ◽  
Marta Wojnowska ◽  
Daniel Walker
Keyword(s):  
United Kingdom ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Pectobacterium Carotovorum ◽  
Plant Pathogenic Bacterium ◽  
Coding Sequences ◽  
Content Type ◽  
The United Kingdom ◽  
Carotovorum Subsp

Here, we report the draft genome sequence of Pectobacterium carotovorum subsp. carotovorum strain LMG 2410, isolated from cucumber in the United Kingdom. The draft genome is 4,773,000 bp, with a G+C content of 51.9%, and carries a total of 4,536 coding sequences.

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