scholarly journals Draft Whole-Genome Sequences of Three Diarrheagenic Escherichia coli Strains Isolated from Farmed Deer in New Zealand

2018 ◽  
Vol 6 (16) ◽  
pp. e00300-18
Author(s):  
A. Springer Browne ◽  
Patrick J. Biggs ◽  
Alice Elliott ◽  
Patricia Jaros ◽  
Nigel P. French ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
New Zealand ◽  
Cervus Elaphus ◽  
Red Deer ◽  
Draft Genome ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli ◽  
Diarrheagenic Escherichia Coli

ABSTRACT Escherichia coli bacteria commonly colonize the gastrointestinal tracts of farmed ruminants. Cattle are a well-recognized reservoir of zoonotic E. coli; we report here, however, the draft genome sequences of three diarrheagenic E. coli strains isolated from farmed red deer (Cervus elaphus) in the Manawatu region of New Zealand.

scholarly journals Draft Genomic Sequencing of Six Potential Extraintestinal Pathogenic Escherichia coli Isolates from Retail Chicken Meat

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Aixia Xu ◽  
James R. Johnson ◽  
Shiowshuh Sheen ◽  
David S. Needleman ◽  
Christopher Sommers
Keyword(s):  
Escherichia Coli ◽  
Draft Genome ◽  
Meat Products ◽  
Chicken Meat ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli ◽  
Safety Research ◽  
Pathogenic Escherichia Coli ◽  
Retail Chicken Meat

ABSTRACT Potential extraintestinal pathogenic Escherichia coli strains DP254, WH333, WH398, F356, FEX675, and FEX725 were isolated from retail chicken meat products. Here, we report the draft genome sequences for these six E. coli isolates, which are currently being used in food safety research.

scholarly journals Draft Genome Sequences of Escherichia coli Strains Isolated at Calving from the Uterus, Vagina, Vulva, and Rectoanal Junction of a Dairy Cow That Later Developed Metritis

2017 ◽  
Vol 5 (11) ◽  
Author(s):  
Soo Jin Jeon ◽  
Federico Cunha ◽  
Amber Ginn ◽  
KwangCheol Casey Jeong ◽  
Klibs N. Galvão
Keyword(s):  
Escherichia Coli ◽  
Dairy Cow ◽  
Phylogenetic Relationships ◽  
Draft Genome ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli ◽  
Insight Into

ABSTRACT Escherichia coli is involved in the pathogenicity of metritis in cows. We report here the genome sequences of E. coli strains isolated at calving from the uterus, vagina, vulva, and rectoanal junction of a dairy cow that later developed metritis. The genomic similarities will give an insight into phylogenetic relationships among strains.

scholarly journals Draft Genome Sequences of Seven Extended-Spectrum β-Lactamase-Producing Escherichia coli Strains Isolated from New Zealand Waterways

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Sara A. Burgess ◽  
Margaux Francois ◽  
Anne C. Midwinter ◽  
Patrick J. Biggs
Keyword(s):  
Escherichia Coli ◽  
New Zealand ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Genome Sequences ◽  
Resistant Genotype ◽  
Content Type ◽  
Esbl Gene ◽  
Extended Spectrum ◽  
The Mean

ABSTRACT Draft genomes of seven extended-spectrum β-lactamase (ESBL)-producing Escherichia coli strains recovered from New Zealand waterways are described. The mean genome size was 5.1 Mb, with 4,724 coding sequences. All genomes contained the ESBL gene blaCTX-M, and one carried a plasmid-mediated AmpC gene, blaCMY-2. A multidrug-resistant genotype was detected in three isolates.

scholarly journals Draft Genome Sequences of Two Enteroinvasive Escherichia coli Strains Representative of Major Enteroinvasive E. coli Clades

2021 ◽  
Vol 10 (23) ◽  
Author(s):  
Michael J. Sikorski ◽  
Tracy H. Hazen ◽  
Gopi Vyas ◽  
Jane M. Michalski ◽  
David A. Rasko
Keyword(s):  
Escherichia Coli ◽  
Draft Genome ◽  
Genomic Data ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
E Coli ◽  
Clinical Illness

There are six described pathotypes of Escherichia coli that cause significant clinical illness in humans. Enteroinvasive E. coli (EIEC) strains have been shown to be separated into three phylogenomic clades. To add to a limited body of EIEC genomic data, we report two high-quality draft genomes representing different EIEC phylogenomic clades.

scholarly journals Draft Genome Sequences of 113 Escherichia coli Strains Isolated from Intramammary Infections in Dairy Cattle

2021 ◽  
Vol 10 (7) ◽  
Author(s):  
Dongyun Jung ◽  
Soyoun Park ◽  
Janina Ruffini ◽  
Simon Dufour ◽  
Jennifer Ronholm
Keyword(s):  
Escherichia Coli ◽  
Dairy Cattle ◽  
Draft Genome ◽  
Bovine Mastitis ◽  
Holstein Cows ◽  
Genome Sequences ◽  
Content Type ◽  
Intramammary Infections ◽  
E Coli ◽  
Etiological Agents

ABSTRACT Escherichia coli is one of the most common etiological agents responsible for clinical bovine mastitis. Here, we report the draft genome sequences and annotations of 113 E. coli strains that were isolated from Holstein cows with intramammary infections in Canada.

scholarly journals Draft Genome Sequences of Four Uropathogenic Escherichia coli Serotype O4:H5 Isolates (ATCC 700414, 700415, 700416, and 700417)

2018 ◽  
Vol 6 (11) ◽  
Author(s):  
Aixia Xu ◽  
Sarah Hertrich ◽  
David S. Needleman ◽  
Shiowshuh Sheen ◽  
Christopher Sommers
Keyword(s):  
Escherichia Coli ◽  
Urinary Tract ◽  
Draft Genome ◽  
Uropathogenic Escherichia Coli ◽  
Genome Sequences ◽  
Processing Technologies ◽  
Content Type ◽  
E Coli ◽  
Tract Infections ◽  
First Time

ABSTRACT Uropathogenic Escherichia coli serotype O4:H5 isolates (ATCC 700414, 700415, 700416, and 700417) were recovered from women with first-time urinary tract infections. Here, we report the draft genome sequences for these four E. coli isolates, which are currently being used to validate food safety processing technologies.

scholarly journals Draft Whole-Genome Sequences of Multidrug-Resistant Escherichia coli O157:H7 Strains Isolated from Feedlot Cattle Treated with Growth-Promoting Agents

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Muhammad A. Rehman ◽  
Catherine Carrillo ◽  
François Malouin ◽  
Moussa S. Diarra
Keyword(s):  
Escherichia Coli ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Feedlot Cattle ◽  
Genome Sequences ◽  
Antibiotic Resistant ◽  
Content Type ◽  
E Coli ◽  
Foodborne Outbreaks ◽  
Uremic Syndrome

ABSTRACT Enterohemorrhagic Escherichia coli serotype O157:H7 is a major cause of foodborne outbreaks and hemolytic-uremic syndrome. Here, we report the draft genome sequences of three antibiotic-resistant E. coli O157:H7 strains isolated from feedlot cattle. These draft genome sequences will aid in the development of sequence-based tools for the detection of virulence and antimicrobial resistance genotypes.

scholarly journals Draft Genome Sequences of Five Neonatal Meningitis-CausingEscherichia coliIsolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

2018 ◽  
Vol 6 (16) ◽  
pp. e00091-18 ◽  
Author(s):  
Aixia Xu ◽  
James R. Johnson ◽  
Shiowshuh Sheen ◽  
Christopher Sommers
Keyword(s):  
Escherichia Coli ◽  
Food Safety ◽  
The Netherlands ◽  
Draft Genome ◽  
Neonatal Meningitis ◽  
Genome Sequences ◽  
Processing Technologies ◽  
Content Type ◽  
E Coli

ABSTRACTNeonatal meningitis-causingEscherichia coliisolates (SP-4, SP-5, SP-13, SP-46, and SP-65) were recovered between 1989 and 1997 from infants in the Netherlands. Here, we report the draft genome sequences of these fiveE. coliisolates, which are currently being used to validate food safety processing technologies.

scholarly journals Draft Genome Sequences of Semiconstitutive Red, Dry, and Rough Biofilm-Forming Commensal and Uropathogenic Escherichia coli Isolates

2017 ◽  
Vol 5 (4) ◽  
Author(s):  
Annika Cimdins ◽  
Petra Lüthje ◽  
Fengyang Li ◽  
Irfan Ahmad ◽  
Annelie Brauner ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Biofilm Formation ◽  
Molecular Basis ◽  
Draft Genome ◽  
Uropathogenic Escherichia Coli ◽  
Clinical Isolates ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli ◽  
K 12

ABSTRACT Strains of Escherichia coli exhibit diverse biofilm formation capabilities. E. coli K-12 expresses the red, dry, and rough (rdar) morphotype below 30°C, whereas clinical isolates frequently display the rdar morphotype semiconstitutively. We sequenced the genomes of eight E. coli strains to subsequently investigate the molecular basis of semiconstitutive rdar morphotype expression.

scholarly journals Draft Genome Sequences of Cefepime-Resistant and -Susceptible Escherichia coli Strains and Imipenem-Resistant and -Susceptible Pseudomonas aeruginosa Strains

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Kendra Batchelder ◽  
Liz Ward ◽  
Elsa Collins ◽  
Caitlin Miles ◽  
Stefania Palm ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Pseudomonas Aeruginosa ◽  
Antibiotic Resistance ◽  
Resistance Genes ◽  
Draft Genome ◽  
Antibiotic Resistance Genes ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli

Draft genome sequences of Escherichia coli and Pseudomonas aeruginosa strains collected from clinical infections were used to determine the prevalence of newly emerging antibiotic resistance genes in Maine. Comparisons between cefepime-resistant and -susceptible E. coli strains and imipenem-resistant and -susceptible P. aeruginosa strains are being conducted.

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