scholarly journals Complete Nucleotide Sequences and Genome Organization of Two Pepper Mild Mottle Virus Isolates from Capsicum annuum in South Korea

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Seung-Kook Choi ◽  
Gug-Seoun Choi ◽  
Sun-Jung Kwon ◽  
Ju-Yeon Yoon
Keyword(s):  
South Korea ◽  
Capsicum Annuum ◽  
Genome Organization ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Mottle Virus ◽  
Genome Sequences ◽  
Pepper Mild Mottle Virus ◽  
Sequencing Method ◽  
Virus Isolates

The complete genome sequences of pepper mild mottle virus (PMMoV)-P2 and -P3 were determined by the Sanger sequencing method. Although PMMoV-P2 and PMMoV-P3 have different pathogenicity in some pepper cultivars, the complete genome sequences of PMMoV-P2 and -P3 are composed of 6,356 nucleotides (nt). In this study, we report the complete genome sequences and genome organization of PMMoV-P2 and -P3 isolates from pepper species in South Korea.

scholarly journals Complete Genome Sequences of Rice Yellow Mottle Virus Isolates from the Federal Democratic Republic of Ethiopia

2019 ◽  
Vol 8 (30) ◽  
Author(s):  
Mbolarinosy Rakotomalala ◽  
Bayuh Belay Abera ◽  
Jacqueline Rakotoarisoa ◽  
Dawit Alemu ◽  
Eugénie Hébrard ◽  
...  
Keyword(s):  
East Africa ◽  
Complete Genome ◽  
Democratic Republic ◽  
Lake Victoria ◽  
Mottle Virus ◽  
Rice Yellow Mottle Virus ◽  
Lake Victoria Basin ◽  
Genome Sequences ◽  
Yellow Mottle ◽  
Virus Isolates

The full-length genomes of two isolates of Rice yellow mottle virus from Ethiopia were sequenced. A comparison with 28 sequences from East Africa showed that they clustered within a new strain named S4et, related to the S4mg and S4ug strains found in the Lake Victoria Basin and Madagascar, respectively.

scholarly journals Near-Complete Genome Sequences of Rice Yellow Mottle Virus Isolates from Senegal

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
H. Tall ◽  
J. Aribi ◽  
S. Camara ◽  
A. Pinel-Galzi ◽  
N. Poulicard ◽  
...  
Keyword(s):  
Phylogenetic Tree ◽  
Complete Genome ◽  
Mottle Virus ◽  
Rice Yellow Mottle Virus ◽  
Genome Sequences ◽  
Yellow Mottle ◽  
First Time ◽  
Virus Isolates ◽  
Basal Position ◽  
Complete Genomic

Rice yellow mottle virus in Senegal is reported here for the first time. The near-complete genomic sequences of two isolates (Se1 and Se5) were obtained. A comparison with 18 sequences from West Africa revealed a new cluster with an isolate from Gambia, located at a basal position in the phylogenetic tree.

scholarly journals Complete Genome Sequence of a Novel Genotype of Pepper Mild Mottle Virus Infecting Pepper in Chile

2020 ◽  
Vol 9 (47) ◽  
Author(s):  
Sven M. H. Berendsen ◽  
Willem E. W. Schravesande
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Mottle Virus ◽  
Pepper Mild Mottle Virus ◽  
Oxford Nanopore ◽  
Novel Genotype ◽  
Oxford Nanopore Technologies ◽  
Sequence Identities

ABSTRACT The complete genome sequence of a Pepper mild mottle virus (PMMoV) found on pepper seeds produced in Chile in 2019 was determined using Oxford Nanopore Technologies and Sanger sequencing. The low nucleotide sequence identities (between 89% and 91%) to known PMMoV isolates suggested that this isolate belongs to a novel genotype.

scholarly journals Complete Genome Sequence of a Tomato Isolate of Parietaria Mottle Virus from Italy

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Carolina Martínez ◽  
José Aramburu ◽  
Luis Rubio ◽  
Luis Galipienso
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Mottle Virus ◽  
Nucleotide Identity ◽  
Genome Sequences ◽  
Tomato Plants ◽  
Tomato Isolate

We report here the complete genome sequence of isolate T32 of parietaria mottle virus (PMoV) infecting tomato plants in Turin, Italy, obtained by Sanger sequencing. T32 shares 90.48 to 96.69% nucleotide identity with other two PoMV isolates, CR8 and Pe1, respectively, whose complete genome sequences are available.

scholarly journals Complete Genome Sequences of Two Hydrangea Ringspot Virus Isolates from Japan

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Akira Yusa ◽  
Nozomu Iwabuchi ◽  
Hiroaki Koinuma ◽  
Takuya Keima ◽  
Yutaro Neriya ◽  
...  
Keyword(s):  
Complete Genome ◽  
Rna Virus ◽  
Nucleotide Sequences ◽  
Ringspot Virus ◽  
Genomic Sequences ◽  
Genome Sequences ◽  
Hydrangea Macrophylla ◽  
Hydrangea Ringspot Virus ◽  
Virus Isolates

Hydrangea ringspot virus (HdRSV) is a plant RNA virus, naturally infecting Hydrangea macrophylla . Here, we report the first genomic sequences of two HdRSV isolates from hydrangea plants in Japan. The overall nucleotide sequences of these Japanese isolates were 96.0 to 96.3% identical to those of known European isolates.

scholarly journals Complete Genome Sequences of Measles Virus Genotype D8 Isolates from South Korea in 2016

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
You-Jin Kim ◽  
Hae Ji Kang ◽  
Su-Jin Kim ◽  
Hye Min Lee ◽  
Sung Soon Kim
Keyword(s):  
Genetic Diversity ◽  
South Korea ◽  
Complete Genome ◽  
Measles Virus ◽  
Virus Transmission ◽  
Wild Type ◽  
Genome Sequences ◽  
Virus Genotype

The complete genome sequences of three wild-type measles viruses (genotype D8) isolated from patients in South Korea were determined. These are the first reported complete genome sequences of measles viruses obtained from South Korea, and the availability of these sequences will improve our understanding of measles virus transmission and genetic diversity.

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