scholarly journals Taxonomic Resolution of the Nematophagous Fungal Isolate ARF18 via Genome Sequencing

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Sandeep Sharma ◽  
Alex Z. Zaccaron ◽  
John B. Ridenour ◽  
Amy Bradshaw ◽  
Terry L. Kirkpatrick ◽  
...  

ABSTRACT The taxonomically uncharacterized nematophagous fungus ARF18, which parasitizes cysts, juveniles, and adults of the soybean cyst nematode (Heterodera glycines), was proposed as a nematode biological control agent in 1991. A 46.3-Mb draft genome sequence of this fungus is presented, and a tentative taxonomic identification as a novel species of Brachyphoris is proposed.

1999 ◽  
Vol 89 (12) ◽  
pp. 1193-1199 ◽  
Author(s):  
Patricia Timper ◽  
Robert D. Riggs ◽  
Devany L. Crippen

Isolates of a sterile fungus designated ARF (Arkansas fungus) can be separated into two groups, ARF-C and ARF-L, that differ morphologically and in their ability to suppress numbers of Heterodera glycines on soybean. Our objectives were to determine if the two ARF groups differed in their ability to parasitize juveniles, females, and eggs in the rhizo-sphere of soybean and to proliferate in soil. The experiments were conducted in a greenhouse using soil infested with homogenized ARF mycelium. The ARF-L isolates parasitized more juveniles and young females than did the ARF-C isolates. Suppression of these stages was 67% for ARF-L and 12% for ARF-C isolates 14 days after nematode inoculation. When soybean plants containing gravid females were transplanted into fungus-infested soil, ARF-L isolates parasitized 55 to 98% of nematode eggs, whereas ARF-C isolates parasitized 0 to 22%. In both heat-treated and nonheated soil, the biomass of mycelial mats, a measure of relative proliferation, tended to be greater for ARF-L than for ARF-C isolates. The ability of ARF-L isolates to parasitize a large percentage of both pre-reproductive stages and eggs of H. glycines may contribute to its effectiveness as a biological control agent.


Nematology ◽  
2015 ◽  
Vol 17 (5) ◽  
pp. 523-530 ◽  
Author(s):  
Daisuke Ito ◽  
Koki Toyota ◽  
Ghalia Missous Sedrati

The soybean cyst nematode (SCN), Heterodera glycines, is a widespread pest in most soybean-producing areas, causing serious damage to soybean crops and resulting in economic losses. We have previously reported that bean sprout residue might function as an environmentally-friendly control agent against SCN. In order to understand the role of water extracted from bean sprout residue as a possible factor in lowering the number of SCN, either water extract of bean sprout residue (WE) or water (W) was applied to pots containing soil infested with SCN, and komatsuna plants, a leafy vegetable, were grown in these pots. After 2 months, the number of SCN, estimated with real-time PCR, was 80% lower in WE than in W and the biomass of komatsuna plants was 100% higher in WE than in W, suggesting that WE has not only an SCN eradication effect but also a fertilisation effect. In field experiments, WE or W was applied ten times during the experimental period from July 2010 to June 2011. The number of SCN decreased by 82% in WE and by 36% in W; however, the marked decrease was observed only between July and September and between April and June. Green soybean plants were grown in the field where WE or W had been applied and the yield was markedly higher in WE (750 g m−2) than in W (200 g m−2). The hatching stimulation of SCN eggs by WE was tested at four different temperatures (10, 20, 25, 30°C) and was observed only at 25°C. These results show that water extract of bean sprout residue decreases the density of SCN and thereby damage to green soybeans, and that the suppressive effect depends on soil temperature.


Agronomy ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 146
Author(s):  
Leonardo F. Rocha ◽  
Karla L. Gage ◽  
Mirian F. Pimentel ◽  
Jason P. Bond ◽  
Ahmad M. Fakhoury

The soybean cyst nematode (SCN; Heterodera glycines Ichinohe) is a major soybean-yield-limiting soil-borne pathogen, especially in the Midwestern US. Weed management is recommended for SCN integrated management, since some weed species have been reported to be hosts for SCN. The increase in the occurrence of resistance to herbicides complicates weed management and may further direct ecological–evolutionary (eco–evo) feedbacks in plant–pathogen complexes, including interactions between host plants and SCN. In this review, we summarize weed species reported to be hosts of SCN in the US and outline potential weed–SCN management interactions. Plants from 23 families have been reported to host SCN, with Fabaceae including most host species. Out of 116 weeds hosts, 14 species have known herbicide-resistant biotypes to 8 herbicide sites of action. Factors influencing the ability of weeds to host SCN are environmental and edaphic conditions, SCN initial inoculum, weed population levels, and variations in susceptibility of weed biotypes to SCN within a population. The association of SCN on weeds with relatively little fitness cost incurred by the latter may decrease the competitive ability of the crop and increase weed reproduction when SCN is present, feeding back into the probability of selecting for herbicide-resistant weed biotypes. Therefore, proper management of weed hosts of SCN should be a focus of integrated pest management (IPM) strategies to prevent further eco–evo feedbacks in the cropping system.


Author(s):  
Kangfu Yu ◽  
Lorna Woodrow ◽  
M. Chun Shi

AAC Richard is a food grade soybean [Glycine max (L.) Merr] cultivar with yellow hilum, high protein concentration, and good processing quality for foreign and domestic soymilk, tofu, and miso markets. It has resistance to SCN (soybean cyst nematode) (Heterodera Glycines Ichinohe). AAC Richard was developed at the Agriculture and Agri-Food Canada (AAFC) Harrow Research and Development Centre (Harrow-RDC), Harrow, Ontario and is adapted to areas of southwest Ontario with 3100 or more crop heat units and has a relative maturity of 2.3 (MG 2.3).


2018 ◽  
Author(s):  
Rick Masonbrink ◽  
Tom R. Maier ◽  
Usha Muppiral ◽  
Arun S. Seetharam ◽  
Etienne Lord ◽  
...  

AbstractHeterodera glycines, commonly referred to as the soybean cyst nematode (SCN), is an obligatory and sedentary plant parasite that causes over a billion-dollar yield loss to soybean production annually. Although there are genetic determinants that render soybean plants resistant to certain nematode genotypes, resistant soybean cultivars are increasingly ineffective because their multi-year usage has selected for virulentH. glycinespopulations. The parasitic success ofH. glycinesrelies on the comprehensive re-engineering of an infection site into a syncytium, as well as the long-term suppression of host defense to ensure syncytial viability. At the forefront of these complex molecular interactions are effectors, the proteins secreted byH. glycinesinto host root tissues. The mechanisms of effector acquisition, diversification, and selection need to be understood before effective control strategies can be developed, but the lack of an annotated genome has been a major roadblock. Here, we use PacBio long-read technology to assemble aH. glycinesgenome of 738 contigs into 123Mb with annotations for 29,769 genes. The genome contains significant numbers of repeats (34%), tandem duplicates (18.7Mb), and horizontal gene transfer events (151 genes). Using previously published effector sequences, the newly generatedH. glycinesgenome, and comparisons to other nematode genomes, we investigate the evolutionary mechanisms responsible for the emergence and diversification of effector genes.


2021 ◽  
Author(s):  
Intiaz Amin Chowdhury ◽  
Guiping Yan ◽  
Addison Plaisance ◽  
sam markell

Soybean cyst nematode (SCN; Heterodera glycines) continues to be the greatest threat to soybean production in the United States. Since host resistance is the primary strategy used to control SCN, knowledge of SCN virulence phenotypes (HG types) is necessary for choosing sources of resistance for SCN management. To characterize SCN virulence phenotypes in North Dakota (ND), a total of 419 soybean fields across 22 counties were sampled during 2015, 2016, and 2017. SCN was detected in 42% of the fields sampled and population densities in these samples ranged from 30 to 92,800 eggs and juveniles per 100 cm3 of soil. The SCN populations from some of the infested fields were virulence phenotyped with seven soybean indicator lines and a susceptible check (Barnes) using the HG type tests. Overall, 73 SCN field populations were successfully virulence phenotyped. The HG types detected in ND were HG type 0 (frequency rate: 36%), 7 (27%), 2.5.7 (19%), 5.7 (11%), 1.2.5.7 (4%), and 2.7 (2%). However, prior to this study only HG type 0 was detected in ND. The designation of each of the HG types detected was then validated in this study by repeating the HG type tests for thirty-three arbitrarily selected samples. This research for the first time reports several new HG types detected in ND and confirms that the virulence of SCN populations is shifting and overcoming resistance, highlighting the necessity of utilization of different resistance sources, rotation of resistance sources, and identification of novel resistance sources for SCN management in ND.


2021 ◽  
pp. 117-124
Author(s):  
Gregory L. Tylka

Abstract This chapter focuses on the economic importance, host range, geographical distribution, damage symptoms and biology and life cycle of the soyabean cyst nematode, Heterodera glycines, a pervasive and destructive pest to soyabean production in the mid-western USA. Some information on its interaction with other plant pathogens, the efficacy and optimization of some recommended integrated nematode management practices and future outlook and research requirements are also presented.


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