scholarly journals Genome Sequences of 19 Rhodococcus erythropolis Cluster CA Phages

2017 ◽  
Vol 5 (49) ◽  
Author(s):  
J. Alfred Bonilla ◽  
Sharon Isern ◽  
Ann M. Findley ◽  
Karen K. Klyczek ◽  
Scott F. Michael ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Complete Genome ◽  
Environmental Samples ◽  
Sequence Similarity ◽  
Rhodococcus Erythropolis ◽  
Genome Sequences ◽  
Content Type ◽  
Nucleotide Sequence Similarity

ABSTRACT We report the complete genome sequences of 19 cluster CA bacteriophages isolated from environmental samples using Rhodococcus erythropolis as a host. All of the phages are Siphoviridae, have similar genome lengths (46,314 to 46,985 bp) and G+C contents (58.5 to 58.8%), and share nucleotide sequence similarity.

scholarly journals Complete Genome Sequences of Two Phage-Like Plasmids Carrying the CTX-M-15 Extended-Spectrum β-Lactamase Gene

2017 ◽  
Vol 5 (19) ◽  
Author(s):  
Anna Colavecchio ◽  
Julie Jeukens ◽  
Luca Freschi ◽  
Jean-Guillaume Edmond Rheault ◽  
Irena Kukavica-Ibrulj ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Nucleotide Sequence ◽  
Complete Genome ◽  
Nucleotide Sequence Identity ◽  
Genome Sequences ◽  
Content Type ◽  
Sequence Identity ◽  
Extended Spectrum ◽  
Lactamase Gene

ABSTRACT Two similar phage-like plasmids carrying CTX-M-15 resistance cassettes were identified from two environmental Escherichia coli isolates. They demonstrate strong nucleotide sequence identity to the phage-like plasmid pECOH89 and Salmonella bacteriophage SSU5.

scholarly journals Complete Genomic Sequences of Two Salmonella enterica subsp. enterica Serogroup C2 (O:6,8) Strains from Central California

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Lisa Gorski ◽  
Steven Huynh ◽  
Kerry K. Cooper ◽  
Craig T. Parker
Keyword(s):  
Salmonella Enterica ◽  
Complete Genome ◽  
Environmental Samples ◽  
Additional Data ◽  
Genomic Sequences ◽  
Genome Sequences ◽  
Content Type ◽  
Central California ◽  
Complete Genomic

ABSTRACT Salmonella enterica subsp. enterica strains RM11060, serotype 6,8:d:−, and RM11065, serotype 6,8:−:e,n,z15, were isolated from environmental samples collected in central California in 2009. We report the complete genome sequences of these two strains. These genomic sequences are distinct and will provide additional data to our understanding of S. enterica genomics.

scholarly journals Complete Genome Sequences of 38 Gordonia sp. Bacteriophages

2017 ◽  
Vol 5 (1) ◽  
Author(s):  
Welkin H. Pope ◽  
Matthew T. Montgomery ◽  
J. Alfred Bonilla ◽  
Randall Dejong ◽  
Rebecca A. Garlena ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Complete Genome ◽  
Sequence Diversity ◽  
Genome Sequences ◽  
Content Type ◽  
Double Stranded Dna ◽  
Nucleotide Sequence Diversity

ABSTRACT We report here the genome sequences of 38 newly isolated bacteriophages using Gordonia terrae 3612 (ATCC 25594) and Gordonia neofelifaecis NRRL59395 as bacterial hosts. All of the phages are double-stranded DNA (dsDNA) tail phages with siphoviral morphologies, with genome sizes ranging from 17,118 bp to 93,843 bp and spanning considerable nucleotide sequence diversity.

scholarly journals Complete Genome Sequences of Cluster F Mycobacteriophages EleanorGeorge, Mattes, and Spikelee

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Christina Jacob ◽  
Yunia Alvarez ◽  
Cynthia Castro ◽  
Katherine Clarke ◽  
Linda Dantico ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Complete Genome ◽  
Sequence Similarity ◽  
Soil Samples ◽  
Genome Sequences ◽  
Content Type ◽  
Isolation Techniques

EleanorGeorge, Mattes, and Spikelee are mycobacteriophages isolated from different soil samples using Mycobacterium smegmatis mc2155 as the host. Each was obtained using direct isolation techniques, purified, and then sequenced. Based on sequence similarity, all three belong to the F1 subcluster and are temperate phages.

scholarly journals Complete Genome Sequence of a Genotype G23P[37] Pheasant Rotavirus Strain Identified in Hungary

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
János Gál ◽  
Szilvia Marton ◽  
Katalin Ihász ◽  
Hajnalka Papp ◽  
Ferenc Jakab ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequence Similarity ◽  
Sequence Analyses ◽  
Rotavirus A ◽  
Nucleotide Sequence Similarity ◽  
Close Relationship

We investigated the genomic properties of a rotavirus A strain isolated from diarrheic pheasant poults in Hungary in 2015. Sequence analyses revealed a shared genomic constellation (G23-P[37]-I4-R4-C4-M4-A16-N10-T4-E4-H4) and close relationship (range of nucleotide sequence similarity: VP2, 88%; VP1 and NSP4, 98%) with another pheasant rotavirus strain isolated previously in Germany.

scholarly journals Genome Sequences of Newly Isolated Mycobacteriophages Forming Cluster S: TABLE 1 

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Monique L. Mills ◽  
Judd Bragg ◽  
Asri Bruce ◽  
Ari Dehn ◽  
Jordan Drouin ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Single Nucleotide Polymorphisms ◽  
Mycobacterium Smegmatis ◽  
Sequence Similarity ◽  
Nucleotide Polymorphisms ◽  
Genome Sequences ◽  
Single Nucleotide ◽  
Nucleotide Sequence Similarity

We describe the genomes of two mycobacteriophages, MosMoris and Gattaca, newly isolated on Mycobacterium smegmatis . The two phages are very similar to each other, differing in 61 single nucleotide polymorphisms and six small insertion/deletions. Both have extensive nucleotide sequence similarity to mycobacteriophage Marvin and together form cluster S.

scholarly journals Diversity and Phylogenetic Relationships of Full Genome Sequences of Cassava Brown Streak Viruses in Kenya

2019 ◽  
pp. 1-11
Author(s):  
T. M. Kathurima ◽  
E. M. Ateka
Keyword(s):  
Nucleotide Sequence ◽  
Coat Protein ◽  
Phylogenetic Relationships ◽  
Sequence Similarity ◽  
Streak Virus ◽  
Full Genome ◽  
Genome Sequences ◽  
Nucleotide Sequence Similarity ◽  
Cassava Brown Streak Virus ◽  
Brown Streak

Cassava brown streak disease is caused by cassava brown streak virus (CBSV) and Uganda cassava brown streak virus (UCBSV). Many of the CBSV and UCBSV diversity studies utilize partial coat protein sequences due to the unavailability of representative full genome sequences. Hence, there is little information on the diversity of cassava brown streak viruses in the rest of the genomes of the two species that are present in the farmers’ fields. The aim of this study was to determine Kenyan full CBSV and UCBSV genomes, and their sequence diversity and phylogenetic relationships within various genome and genome segments. Twenty four CBSVs positive samples tested by RT PCR from major cassava producing regions in Kenya were sequenced using Illumina MiSeq. Quality assessment of the output reads was done using the CLC Genomics 5.5.1 software programs. Genome assembly was done by de novo and reference guided assembly. Nucleotide sequence similarity of CBSV and UCBSV was determined. Phylogenetic relationships between CBSV and UCBSV were determined by performing the neighbour-joining analysis using MEGA 6.0 software. Six CBSV and 9 UCBSV genomes were generated from this study. The coat protein of the CBSV sequences had nucleotide sequence similarity of 92-100% while P1 and P3 gene had 75-100% and 76-100%, respectively. The coat protein of the UCBSV sequences had nucleotide sequence similarity of 91-99%. P1 and P3 gene had 83-100% and 86-99%, respectively. The phylogenetic analysis of full genomes revealed two distinct clusters one for UCBSV and another cluster for CBSV. Individual gene segments phylogenetic tree resembled that of the whole genome by clustering the nucleotide sequences into two clusters, one belonging to UCBSV and the other CBSV. The study revealed an average genome nucleotide diversity of 21.5% and 15.8% in CBSV and UCBSV respectively. A vast genetic diversity observed in CBSV and UCBSV in this study portends a lot of challenges in developing molecular diagnostic techniques as well as control strategies against the viruses.

scholarly journals Complete Genome Sequences of Four Extensively Drug-Resistant Acinetobacter baumannii Isolates from Thailand

2020 ◽  
Vol 9 (40) ◽  
Author(s):  
Peechanika Chopjitt ◽  
Thidathip Wongsurawat ◽  
Piroon Jenjaroenpun ◽  
Parichart Boueroy ◽  
Rujirat Hatrongjit ◽  
...  
Keyword(s):  
Acinetobacter Baumannii ◽  
Complete Genome ◽  
Sequence Type ◽  
Clinical Isolates ◽  
Drug Resistant ◽  
Genome Sequences ◽  
Content Type ◽  
Type Isolate ◽  
Resistant Genes ◽  
Extensively Drug Resistant

ABSTRACT Here, we report the complete genome sequences of four clinical isolates of extensively drug-resistant Acinetobacter baumannii (XDRAB), isolated in Thailand. These results revealed multiple antimicrobial-resistant genes, each involving two sequence type 16 (ST16) isolates, ST2, and a novel sequence type isolate, ST1479.

scholarly journals Complete Genome Sequences of Six Novel Macaca mulatta Papillomavirus Types Isolated from Genital Sites of Rhesus Monkeys in Hong Kong SAR, China

2018 ◽  
Vol 7 (22) ◽  
Author(s):  
Teng Long ◽  
Po Yee Wong ◽  
Wendy C. S. Ho ◽  
Robert D. Burk ◽  
Paul K. S. Chan ◽  
...  
Keyword(s):  
Hong Kong ◽  
Macaca Mulatta ◽  
Complete Genome ◽  
Rhesus Monkeys ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes ◽  
Hong Kong Sar

The complete genomes of six Macaca mulatta papillomavirus types isolated from genital sites of rhesus monkeys were characterized, and less than 72% identity with the complete L1 genes of known papillomaviruses was found. Macaca mulatta papillomavirus type 2 (MmPV2), MmPV3, and MmPV6 cluster into the genus Alphapapillomavirus, and MmPV4, MmPV5, and MmPV7 cluster into the genus Gammapapillomavirus.

scholarly journals Complete Genome Sequences of Two Plant Growth-Inhibiting Bacteria, Acinetobacter ursingii M3 and Asticcacaulis excentricus M6, Isolated from Duckweed (Lemna minor)

2018 ◽  
Vol 7 (12) ◽  
Author(s):  
Hidehiro Ishizawa ◽  
Masashi Kuroda ◽  
Daisuke Inoue ◽  
Michihiko Ike
Keyword(s):  
Plant Growth ◽  
Complete Genome ◽  
Lemna Minor ◽  
Genome Sequences ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
Growth Inhibiting

Acinetobacter ursingii M3 and Asticcacaulis excentricus M6 are plant growth-inhibiting bacteria that reduce the yield of the duckweed Lemna minor. We report here the complete genome sequences of A. ursingii M3 and A. excentricus M6, sequenced using the PacBio RS II platform.

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