scholarly journals Draft Genome Sequences of 29 Helicobacter pylori Strains Isolated from Colombia

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Angela B. Muñoz ◽  
Johanna Stepanian ◽  
Carmen Acosta ◽  
Juan S. Solano-Gutierrez ◽  
Filipa F. Vale ◽  
...  

ABSTRACT Here, we present the draft genome sequences of 29 Colombian Helicobacter pylori strains. These strains were isolated in Bogotá, Colombia, from patients diagnosed with chronic gastritis. The genomic characterization of these strains will provide more information on the genetic composition of H. pylori strains from Colombia.

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Alix A. Guevara ◽  
Roberto C. Torres ◽  
John J. Suaréz ◽  
Fabian L. Castro-Valencia ◽  
Giovanna Parra ◽  
...  

We present the complete genome sequences of three Helicobacter pylori strains isolated from patients who resided in Tolima Department, Colombia, diagnosed with chronic gastritis. The genomes present an average length of 1.6 Mbp and 1,546 genes and correspond to different H. pylori subpopulations.


2020 ◽  
Vol 9 (41) ◽  
Author(s):  
Souad Kartti ◽  
Najat Bouihat ◽  
Nargisse El Hajjami ◽  
Mouna Ouadghiri ◽  
Tarik Aanniz ◽  
...  

ABSTRACT Helicobacter pylori affects up to 50% of people worldwide. Here, we present the draft genome sequences of six H. pylori strains isolated from Moroccan patients with different gastric diseases. Multilocus sequence typing analysis showed that all of the H. pylori isolates belonged to the hspWAfrica group.


2019 ◽  
Vol 8 (38) ◽  
Author(s):  
M. Di Federico ◽  
M. Orsini ◽  
M. Ancora ◽  
M. Marcacci ◽  
M. Di Domenico ◽  
...  

Mycoplasma mycoides subsp. mycoides is the etiological agent of contagious bovine pleuropneumonia (CBPP). While several findings on CBPP prevalence in Nigeria were documented, no data were reported about the genomic characterization of Nigerian M. mycoides subsp. mycoides strains. Here, we present the draft genome sequences of two novel M. mycoides subsp. mycoides strains isolated in Nigeria.


2018 ◽  
Vol 6 (5) ◽  
Author(s):  
Vignesh Shetty ◽  
Binit Lamichhane ◽  
Eng-Guan Chua ◽  
Mamatha Ballal ◽  
Chin-Yen Tay

ABSTRACT Helicobacter pylori is a successful human gastric pathogen that is associated with the development of gastric cancer. The draft genome sequences of 42 H. pylori clinical strains isolated from South Indian rural populations will provide further insights into the evolution and genetic makeup of Indian H. pylori strains.


2013 ◽  
Vol 79 (10) ◽  
pp. 3176-3184 ◽  
Author(s):  
Jumpei Uchiyama ◽  
Hiroaki Takeuchi ◽  
Shin-ichiro Kato ◽  
Keiji Gamoh ◽  
Iyo Takemura-Uchiyama ◽  
...  

ABSTRACTHelicobacter pyloriinhabits the stomach mucosa and is a causative agent of stomach ulcer and cancer. In general, bacteriophages (phages) are strongly associated with bacterial evolution, including the development of pathogenicity. Several tailed phages have so far been reported inH. pylori. We have isolated anH. pyloriphage, KHP30, and reported its genomic sequence. In this study, we examined the biological characteristics of phage KHP30. Phage KHP30 was found to be a spherical lipid-containing phage with a diameter of ca. 69 nm. Interestingly, it was stable from pH 2.5 to pH 10, suggesting that it is adapted to the highly acidic environment of the human stomach. Phage KHP30 multiplied on 63.6% of clinicalH. pyloriisolates. The latent period was ca. 140 min, shorter than the doubling time ofH. pylori(ca. 180 min). The burst size was ca. 13, which was smaller than the burst sizes of other known tailed or spherical phages. Phage KHP30 seemed to be maintained as an episome inH. pyloristrain NY43 cells, despite a predicted integrase gene in the KHP30 genomic sequence. Seven possible virion proteins of phage KHP30 were analyzed using N-terminal protein sequencing and mass spectrometry, and their genes were found to be located on its genomic DNA. The genomic organization of phage KHP30 differed from the genomic organizations in the known spherical phage familiesCorticoviridaeandTectiviridae. This evidence suggests that phage KHP30 is a new type of spherical phage that cannot be classified in any existing virus category.


2021 ◽  
Vol 10 (32) ◽  
Author(s):  
Baha Abdalhamid ◽  
Itidal Reslane ◽  
Emily Mccutchen ◽  
Peter C. Iwen

Multidrug-resistant Pseudomonas aeruginosa is a serious threat worldwide causing health care-acquired infections and is associated with significant morbidity and mortality. This report describes the draft genome sequences of five multidrug-resistant Pseudomonas aeruginosa strains isolated from human infections.


2013 ◽  
Vol 1 (5) ◽  
Author(s):  
R. I. Armitano ◽  
G. Zerbetto De Palma ◽  
M. J. Matteo ◽  
S. Revale ◽  
S. Romero ◽  
...  

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Daniel Castillo ◽  
Verona Vandieken ◽  
Bert Engelen ◽  
Tim Engelhardt ◽  
Mathias Middelboe

ABSTRACT We present here the draft genome sequences of six Vibrio diazotrophicus strains, which were isolated from deep subseafloor sediments of the Baltic Sea. The genomic sequences contained several virulence and antibiotic resistance genes. These genome sequences provide insights into the genetic composition and evolution of the genus Vibrio in marine environments.


2016 ◽  
Vol 198 (18) ◽  
pp. 2536-2548 ◽  
Author(s):  
Stephanie L. Servetas ◽  
Beth M. Carpenter ◽  
Kathryn P. Haley ◽  
Jeremy J. Gilbreath ◽  
Jennifer A. Gaddy ◽  
...  

ABSTRACTHelicobacter pylorimust be able to rapidly respond to fluctuating conditions within the stomach. Despite this need for constant adaptation,H. pyloriencodes few regulatory proteins. Of the identified regulators, the ferric uptake regulator (Fur), the nickel response regulator (NikR), and the two-component acid response system (ArsRS) are each paramount to the success of this pathogen. While numerous studies have individually examined these regulatory proteins, little is known about their combined effect. Therefore, we constructed a series of isogenic mutant strains that contained all possible single, double, and triple regulatory mutations in Fur, NikR, and ArsS. A growth curve analysis revealed minor variation in growth kinetics across the strains; these were most pronounced in the triple mutant and in strains lacking ArsS. Visual analysis showed that strains lacking ArsS formed large aggregates and a biofilm-like matrix at the air-liquid interface. Biofilm quantification using crystal violet assays and visualization via scanning electron microscopy (SEM) showed that all strains lacking ArsS or containing a nonphosphorylatable form of ArsR (ArsR-D52N mutant) formed significantly more biofilm than the wild-type strain. Molecular characterization of biofilm formation showed that strains containing mutations in the ArsRS pathway displayed increased levels of cell aggregation and adherence, both of which are key to biofilm development. Furthermore, SEM analysis revealed prevalent coccoid cells and extracellular matrix formation in the ArsR-D52N, ΔnikRΔarsS, and ΔfurΔnikRΔarsSmutant strains, suggesting that these strains may have an exacerbated stress response that further contributes to biofilm formation. Thus,H. pyloriArsRS has a previously unrecognized role in biofilm formation.IMPORTANCEDespite a paucity of regulatory proteins, adaptation is key to the survival ofH. pyloriwithin the stomach. While prior studies have focused on individual regulatory proteins, such as Fur, NikR, and ArsRS, few studies have examined the combined effect of these factors. Analysis of isogenic mutant strains that contained all possible single, double, and triple regulatory mutations in Fur, NikR, and ArsS revealed a previously unrecognized role for the acid-responsive two-component system ArsRS in biofilm formation.


2011 ◽  
Vol 18 (11) ◽  
pp. 1957-1961 ◽  
Author(s):  
Lin Lü ◽  
Han-qing Zeng ◽  
Pi-long Wang ◽  
Wei Shen ◽  
Ting-xiu Xiang ◽  
...  

ABSTRACTHelicobacter pyloriinfection is prevalent worldwide and results in chronic gastritis, which may lead to gastric mucosa-associated lymphoid tissue lymphoma and gastric cancer. We have previously reported that oral immunization with recombinantMycobacterium smegmatisexpressing theH. pyloriouter membrane protein 26-kilodalton (Omp26) antigen affords therapeutic protection againstH. pyloriinfection in mice. In the present study, we investigated the prophylactic effects of this vaccine candidate onH. pylorichallenge in mice. We found that oral immunization with recombinantMycobacteriumOmp26 significantly reducedH. pyloricolonization in the stomach compared to inoculation with wild-typeM. smegmatisin control mice. Six of the recombinantMycobacterium-immunized mice (60%) were completely protected fromH. pyloriinfection. The severity ofH. pylori-associated chronic gastritis assessed histologically was significantly milder in mice vaccinated with recombinantMycobacteriumthan in control animals. Mice immunized with recombinantMycobacteriumshowed enhanced antigen-specific lymphocyte proliferation and antibody responses. Moreover, immunization with recombinantMycobacteriumresulted in an increased expression of interleukin-2 and gamma interferon in the stomach and spleen, as determined by reverse transcription-PCR analysis. Our results collectively suggest that vaccination with recombinantMycobacteriumOmp26 confers prophylactic protection againstH. pyloriinfection. The inhibition ofH. pyloricolonization is associated with the induction of antigen-specific humoral and cell-mediated immune responses.


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