scholarly journals Draft Genome Sequence of “Candidatus Izimaplasma sp.” Strain ZiA1, Obtained from a Toluene-Degrading and Iron-Reducing Enrichment Culture

2018 ◽  
Vol 7 (8) ◽  
Author(s):  
So-Jeong Kim ◽  
Soo-Je Park ◽  
Jong-Geol Kim ◽  
Man-Young Jung ◽  
Joo-Han Gwak ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

Here, we report the draft genome sequence of “Candidatus Izimaplasma sp.” strain ZiA1 (1.88 Mb and 29.6% G+C content).

scholarly journals Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring

2018 ◽  
Vol 6 (11) ◽  
Author(s):  
Anna-Louise Reysenbach ◽  
John A. Donaho ◽  
John F. Kelley ◽  
Emily St. John ◽  
Christina Turner ◽  
...  
Keyword(s):  
New Zealand ◽  
Carbohydrate Metabolism ◽  
Genome Sequence ◽  
Hot Spring ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Complex Carbohydrate ◽  
Content Type ◽  
Geothermal Spring

ABSTRACT A draft genome of a novel Dictyoglomus sp., NZ13-RE01, was obtained from a New Zealand hot spring enrichment culture. The 1,927,012-bp genome is similar in both size and G+C content to other Dictyoglomus spp. Like its relatives, Dictyoglomus sp. NZ13-RE01 encodes many genes involved in complex carbohydrate metabolism.

scholarly journals Draft Genome Sequence of the Redox-Active Enteric Bacterium Citrobacter portucalensis Strain MBL

2020 ◽  
Vol 9 (32) ◽  
Author(s):  
Lev M. Tsypin ◽  
Scott H. Saunders ◽  
Yinon Bar-On ◽  
Jared R. Leadbetter ◽  
Dianne K. Newman
Keyword(s):  
Carboxylic Acid ◽  
Genome Sequence ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Enteric Bacterium ◽  
Content Type ◽  
Soil Enrichment ◽  
Redox Active ◽  
A Genome

ABSTRACT We grew a soil enrichment culture to identify organisms that anaerobically oxidize phenazine-1-carboxylic acid. A strain of Citrobacter portucalensis was isolated from this enrichment and sequenced by both Illumina and PacBio technologies. It has a genome with a length of 5.3 Mb, a G+C content of 51.8%, and at least one plasmid.

scholarly journals Draft Genome Sequence of Acidovorax sp. Strain NB1, Isolated from a Nitrite-Oxidizing Enrichment Culture

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Hiroto Ide ◽  
Kento Ishii ◽  
Hirotsugu Fujitani ◽  
Satoshi Tsuneda
Keyword(s):  
Genome Sequence ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
Nitrite Oxidizing Bacteria ◽  
Genomic Relatedness

Here, we report the draft genome sequence of Acidovorax sp. strain NB1, isolated from an enrichment culture of nitrite-oxidizing bacteria (NOB). Genes involved in denitrification were found in the draft genome of NB1. The closest strain to NB1 based on genomic relatedness is Acidovorax sp. strain GW101-3H11, with 91.5% average nucleotide identity.

scholarly journals Draft Genome Sequence of Anoxybacillus ayderensis Strain MT-Cab (Firmicutes)

2017 ◽  
Vol 5 (26) ◽  
Author(s):  
Vera Thiel ◽  
Marcus Tank ◽  
Lynn P. Tomsho ◽  
Richard Burhans ◽  
Scott E. Gay ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gram Positive ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT The draft genome of the Gram-positive spore-forming Anoxybacillus ayderensis strain MT-Cab (Firmicutes), isolated from an enrichment culture of Chloracidobacterium thermophilum, was sequenced and comprises 2,577,015 bp in 92 contigs. The draft genome is predicted to consist of 2,699 protein-coding genes, 73 tRNA-coding genes, and an estimated 8 rRNA operons.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of a Vibrio harveyi Strain Associated with Vibriosis in Pacific White Shrimp (Litopenaeus vannamei)

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Emille Moreno ◽  
Marci Parks ◽  
Lee J. Pinnell ◽  
James J. Tallman ◽  
Jeffrey W. Turner
Keyword(s):  
Genome Sequence ◽  
Litopenaeus Vannamei ◽  
Vibrio Harveyi ◽  
Draft Genome ◽  
Penaeid Shrimp ◽  
Pacific White Shrimp ◽  
Draft Genome Sequence ◽  
White Shrimp ◽  
Content Type ◽  
Future Studies

ABSTRACT Vibrio harveyi is a Gram-negative bacterium associated with vibriosis in penaeid shrimp. Here, we report the draft genome sequence of a V. harveyi strain isolated from Pacific white shrimp (Litopenaeus vannamei) during a vibriosis outbreak. The availability of this genome will aid future studies of vibriosis in shrimp aquaculture.

scholarly journals Draft Genome Sequence of Pantoea sp. Strain A4, a Rafflesia-Associated Bacterium That ProducesN-Acylhomoserine Lactones as Quorum-Sensing Molecules

2012 ◽  
Vol 194 (23) ◽  
pp. 6610-6610 ◽  
Author(s):  
Kar-Wai Hong ◽  
Han Ming Gan ◽  
Siew-Moon Low ◽  
Patrick Kok Yuen Lee ◽  
Yee-Meng Chong ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
First Time

ABSTRACTPantoeasp. strain A4 is a Gram-negative bacterium isolated from theRafflesiaflower. We present here, for the first time, the genome sequence ofRafflesia-associatedPantoeasp. strain A4, which exhibited quorum-sensing activity.

scholarly journals Draft Genome Sequence of the Iridescent Marine Bacterium Cellulophaga lytica CECT 8139

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Maylis Chapelais-Baron ◽  
Isabelle Goubet ◽  
Eric Duchaud ◽  
Eric Rosenfeld
Keyword(s):  
Genome Sequence ◽  
Marine Bacterium ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Physiological Properties

ABSTRACT Some species of the genus Cellulophaga have been reported as having biotechnological interests and noteworthy physiological properties. We report here the draft genome sequence of Cellulophaga lytica CECT 8139, a bacterium that produces an intensely iridescent colony biofilm on agar surfaces.

scholarly journals Draft Genome Sequence of a Clinical Isolate of Streptococcus mutans Strain HM

2017 ◽  
Vol 5 (33) ◽  
Author(s):  
Yoshio Kondo ◽  
Haruka Nishimata ◽  
Kiyoshi Hidaka ◽  
Tomoyuki Hasuwa ◽  
Hiroyuki Moriuchi ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Infective Endocarditis ◽  
Streptococcus Mutans ◽  
Clinical Isolate ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Virulence Potential

ABSTRACT We report the draft genome sequence of Streptococcus mutans strain HM isolated from a 4-year-old girl with infective endocarditis. The genomics information will provide information on the genetic diversity and virulence potential of S. mutans strain HM.

scholarly journals Draft Genome Sequence of Enterococcus faecalis DD14, a Bacteriocinogenic Lactic Acid Bacterium with Anti-Clostridium Activity

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Yanath Belguesmia ◽  
Valérie Leclère ◽  
Matthieu Duban ◽  
Eric Auclair ◽  
Djamel Drider
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Enterococcus Faecalis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Gram Positive Bacteria ◽  
Healthy Newborn

ABSTRACT We report the draft genome sequence of Enterococcus faecalis DD14, a strain isolated from meconium of a healthy newborn at Roubaix Hospital (France). The strain displayed antagonism against a set of Gram-positive bacteria through concomitant production of lactic acid and bacteriocin. The genome has a size of 2,893,365 bp and a 37.3% G+C ratio and is predicted to contain at least 2,755 coding sequences and 62 RNAs.

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