Ectomycorrhizal community composition of Pinus tabulaeformis assessed by ITS-RFLP and ITS sequences

Botany ◽  
2010 ◽  
Vol 88 (6) ◽  
pp. 590-595 ◽  
Author(s):  
Qin Wang ◽  
Liang-Dong Guo
Keyword(s):  
Community Composition ◽  
Dominant Species ◽  
Morphological Characters ◽  
Its Sequences ◽  
Pinus Tabulaeformis ◽  
Ectomycorrhizal Community ◽  
Lactarius Deliciosus ◽  
Ecm Fungi ◽  
Pinus Tabulaeformis Carr ◽  
Sampling Times

Ectomycorrhizal (ECM) fungal composition was examined in a Pinus tabulaeformis Carr. forest. A total of 28 root samples of P. tabulaeformis were collected in June and September. Thirty-five ECM morphotypes were identified according to ECM morphological characters, and 26 ECM fungi were identified based on the analyses of ITS-RFLP and ITS sequences. Tomentella , Sebacina , and Tuber were common genera, and Atheliaceae sp., Lactarius deliciosus , Tomentella ferruginea , and Tomentella sp. 3 were dominant species. Of these ECM fungi, 13 were found in June, 19 in September, and 6 during both sampling times. Atheliaceae sp. and T. ferruginea were the dominant fungi both in June and September. Lactarius deliciosus was dominant in June, but rare in September. Tomentella sp. 3 was dominant in September but rare in June.

scholarly journals Addressing widespread misidentifications of traditional medicinal mushrooms in Sanghuangporus (Basidiomycota) through ITS barcoding and designation of reference sequences

IMA Fungus ◽  
2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Shan Shen ◽  
Shi-Liang Liu ◽  
Ji-Hang Jiang ◽  
Li-Wei Zhou
Keyword(s):  
Species Identification ◽  
Rolling Circle Amplification ◽  
Practical Method ◽  
Morphological Characters ◽  
Its Sequences ◽  
Commercial Development ◽  
Medicinal Mushrooms ◽  
Rolling Circle ◽  
Reference Sequences ◽  
Its Barcoding

Abstract“Sanghuang” refers to a group of important traditionally-used medicinal mushrooms belonging to the genus Sanghuangporus. In practice, species of Sanghuangporus referred to in medicinal studies and industry are now differentiated mainly by a BLAST search of GenBank with the ITS barcoding region as a query. However, inappropriately labeled ITS sequences of “Sanghuang” in GenBank restrict accurate species identification and, to some extent, the utilization of these species as medicinal resources. We examined all available 271 ITS sequences related to “Sanghuang” in GenBank including 31 newly submitted sequences from this study. Of these sequences, more than half were mislabeled so we have now corrected the corresponding species names. The mislabeled sequences mainly came from strains utilized by non-taxonomists. Based on the analyses of ITS sequences submitted by taxonomists as well as morphological characters, we separate the newly described Sanghuangporus subbaumii from S. baumii and treat S. toxicodendri as a later synonym of S. quercicola. Fourteen species of Sanghuangporus are accepted, with intraspecific distances up to 1.30% (except in S. vaninii, S. weirianus and S. zonatus) and interspecific distances above 1.30% (except between S. alpinus and S. lonicerinus, and S. baumii and S. subbaumii). To stabilize the concept of these 14 species of Sanghuangporus, their taxonomic information and reliable ITS reference sequences are provided. Moreover, ten potential diagnostic sequences are provided for Hyperbranched Rolling Circle Amplification to rapidly confirm three common commercial species, viz. S. baumii, S. sanghuang, and S. vaninii. Our results provide a practical method for ITS barcoding-based species identification of Sanghuangporus and will promote medicinal studies and commercial development from taxonomically correct material.

scholarly journals Location, but not defensive genotype, determines ectomycorrhizal community composition in Scots pine ( Pinus sylvestris L.) seedlings

2021 ◽  
Author(s):  
Jim Downie ◽  
Andy F. S. Taylor ◽  
Glenn Iason ◽  
Ben Moore ◽  
Jonathan Silvertown ◽  
...  
Keyword(s):  
Pinus Sylvestris ◽  
Community Composition ◽  
Scots Pine ◽  
Ectomycorrhizal Community

scholarly journals Response Characteristics of Chinese Pine (Pinus tabulaeformis Carr.) Radial Growth to Climate and Drought Variability Reconstruction in Western Liaoning, Northeast China

Forests ◽  
2019 ◽  
Vol 10 (9) ◽  
pp. 752
Author(s):  
Liu ◽  
Bao ◽  
Bao
Keyword(s):  
Northeast China ◽  
Radial Growth ◽  
Pinus Tabulaeformis ◽  
Western Liaoning ◽  
Chinese Pine ◽  
The Past ◽  
The North ◽  
Pinus Tabulaeformis Carr ◽  
The North Pacific

Chinese pine (Pinus tabulaeformis Carr.) plays an important role in maintaining ecosystem health and stability in western Liaoning Province and the southern Horqin sand land, Northeast China, with benefits including sand fixation and soil erosion. In the context of climate change, developing a better understanding of the relationship between climate factors and growth rates of this species will be extremely valuable in guiding management activities and meeting regional conservation objectives. Here, the results based on two groups of tree-ring samples show that the radial growth of Chinese pine is controlled primarily by water conditions. The longer chronology had the highest correlation coefficient with the January–September mean self-calibrating Palmer Drought Severity Index (scPDSI); therefore, drought variability was reconstructed for the period 1859–2014. Statistical analysis showed that our model explained 41.9% of the variance in radial growth during the 1951–2014 calibration period. Extreme dry and wet events, defined as the criteria of one standard deviation less or greater than the mean value, accounted for 19.9% and 18.6% of the 156-year climate record, respectively. During the past century, the regional hydroclimate experienced significant long-term fluctuations. The dry periods occurred from the early-1900s–1930s and 1980s–2000s, and the wet periods occurred from the 1940s–1970s. The drought reconstruction was consistent with the decreasing trend of the East Asian summer monsoon since the late 1970s. The reconstructed temporal patterns in hydroclimate in western Liaoning were closely related to the large-scale climate drivers in the North Pacific and the tropical equatorial Pacific. The teleconnections were confirmed by spatial correlations between the reconstructed sequence and sea surface temperature (SST) in the North Pacific, as well as the correlations with the Pacific Decadal Oscillation (PDO) and El Niño Southern Oscillation (ENSO) indices. Aerosols played an important role in affecting drought variations over the past several decades. Moisture stress caused by global warming and interdecadal changes in the PDO will have long-term effects on the growth of pines in the study area in the future.

scholarly journals Erysiphe trifolii Causing Powdery Mildew of Lentil (Lens culinaris)

Plant Disease ◽  
2009 ◽  
Vol 93 (8) ◽  
pp. 797-803 ◽  
Author(s):  
Renuka N. Attanayake ◽  
Dean A. Glawe ◽  
Frank M. Dugan ◽  
Weidong Chen
Keyword(s):  
Powdery Mildew ◽  
Pacific Northwest ◽  
The United States ◽  
Morphological Characters ◽  
Grain Legumes ◽  
Its Sequences ◽  
Powdery Mildew Fungus ◽  
The Pacific ◽  
Soybean Genotypes ◽  
Erysiphe Trifolii

The taxonomy of the powdery mildew fungus infecting lentil in the Pacific Northwest (PNW) of the United States was investigated on the basis of morphology and rDNA internal transcribed spacer (ITS) sequences. Anamorphic characters were in close agreement with descriptions of Erysiphe trifolii. However, teleomorphs formed chasmothecial appendages with highly branched apices, whereas E. trifolii has been described as producing flexuous or sometimes loosely branched appendages. Branched appendages have been described in Erysiphe diffusa, a fungus reported from species of Lens, Glycine, and Sophora, raising the possibility that the PNW fungus could be E. diffusa. Examination of morphological characters of an authentic specimen of E. trifolii from Austria determined that it included chasmothecial appendages resembling those seen in PNW specimens. Furthermore, ITS sequences from five powdery mildew samples collected from lentils in PNW greenhouses and fields from 2006 to 2008 were identical to one another, and exhibited higher similarity to sequences of E. trifolii (99%) than to those of any other Erysiphe spp. available in GenBank. Parsimony analysis grouped the lentil powdery mildew into a clade with Erysiphe baeumleri, E. trifolii, and E. trifolii–like Oidium sp., but indicated a more distant relationship to E. diffusa. In greenhouse inoculation studies, the lentil powdery mildew fungus did not infect soybean genotypes known to be susceptible to E. diffusa. The pathogenicity of E. trifolii on lentil was confirmed using modified Koch's postulates. This is the first report of E. trifolii infecting lentil. E. diffusa and E. trifolii have different host ranges, so the discovery of E. trifolii on lentil has implications both for determining species of powdery mildews on cool-season grain legumes, and in disease management.

Phylogeny of Isatis (Brassicaceae) and allied genera based on ITS sequences of nuclear ribosomal DNA and morphological characters

Flora ◽  
2010 ◽  
Vol 205 (5) ◽  
pp. 337-343 ◽  
Author(s):  
Hamid Moazzeni ◽  
Shahin Zarre ◽  
Ihsan A. Al-Shehbaz ◽  
Klaus Mummenhoff
Keyword(s):  
Ribosomal Dna ◽  
Morphological Characters ◽  
Its Sequences ◽  
Nuclear Ribosomal Dna

Ectomycorrhizal community composition of organic and mineral soil horizons in silver fir (Abies alba Mill.) stands

Mycorrhiza ◽  
2020 ◽  
Vol 30 (5) ◽  
pp. 541-553
Author(s):  
Tanja Mrak ◽  
Emira Hukić ◽  
Ines Štraus ◽  
Tina Unuk Nahberger ◽  
Hojka Kraigher
Keyword(s):  
Community Composition ◽  
Mineral Soil ◽  
Abies Alba ◽  
Silver Fir ◽  
Ectomycorrhizal Community ◽  
Soil Horizons

scholarly journals The Dark Septate Endophytes and Ectomycorrhizal Fungi Effect on Pinus tabulaeformis Carr. Seedling Growth and their Potential Effects to Pine Wilt Disease Resistance

Forests ◽  
2019 ◽  
Vol 10 (2) ◽  
pp. 140 ◽  
Author(s):  
Honglong Chu ◽  
Chuyan Wang ◽  
Zhumei Li ◽  
Haihua Wang ◽  
Yuguo Xiao ◽  
...  
Keyword(s):  
Ectomycorrhizal Fungi ◽  
Growth Traits ◽  
Pine Wilt Disease ◽  
Wilt Disease ◽  
Pinus Tabulaeformis ◽  
Conifer Forest ◽  
Cumulative Mortality ◽  
Pine Wilt ◽  
Pinus Tabulaeformis Carr ◽  
The Relationship

Pine wilt disease (PWD), a worldwide threat to pine forests, has caused tremendous damage to conifer forest in the world. However, little research has been conducted on the relationship between symbiosis functions of root associated fungi and pine wilt disease. In this study, we assessed the influence of seven ectomycorrhizal fungi (ECMF) and five dark septate endophytic fungi (DSE) on the growth traits and root morphology as well as the correlation of these parameters to the cumulative mortality and the morbidity rates in Pinus tabulaeformis Carr.showed the lowest cumulative mortality rates. We propose that the ECMF/DSE symbiosis enhanced the resistance of pine wilt disease via mitigation the dysfunction of water caused by PWN infection. Our research provided evidence that inoculation of ECMF/DSE could be a potential way for pine wilt disease prevention. To find highly efficient fungi for pine wilt disease management, more ECMF and DSE species should be tested.

Three novel species of Russula from southern China based on morphological and molecular evidence

Phytotaxa ◽  
2019 ◽  
Vol 392 (4) ◽  
pp. 264 ◽  
Author(s):  
JING-WEI LI ◽  
JIAN-FEI ZHENG ◽  
YU SONG ◽  
FA YUAN ◽  
LI-HONG QIU
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Internal Transcribed Spacer ◽  
Novel Species ◽  
Southern China ◽  
Morphological Characters ◽  
Its Sequences ◽  
Molecular Evidence ◽  
Three New Species

Three new species of Russula collected from southern China are proposed based on morphological characters and phylogenetic analysis of internal transcribed spacer (ITS) sequences. Russula bubalina sp. nov. is characterized by cinnamon buff to pink pileus with striate margin, interveined and forked lamellae, basidiospores with warty ornamentations not forming reticulum, hymenial cystidia becoming brown in sulphovanillin (SV) and slender terminal cells in suprapellis. R. pseudobubalina sp. nov. is closely related to Russula bubalina in macro-morphology, but it can be recognized by its unforked lamellae, shorter cheilocystidia, bigger basidia and basidiospores with lower ornamentations. Russula subatropurpurea sp. nov. can be recognized by the purplish brown pileus, mild-tasted and white context changing to light purplish red with FeSO4, white and forking lamellae without lamellulae, long hymenial cystidia becoming brown in SV. Both morphological and phylogenetic analysis consistently confirmed the distinct positions of three new species in subg. Heterophyllidia subsection Heterophyllinae.

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