scholarly journals Comparison of staircase and asymmetrical before-after control impact (aBACI) experimental designs to test the effectiveness of stream restoration at increasing juvenile steelhead density

Author(s):  
Thomas M. Loughin ◽  
Stephen N. Bennett ◽  
Nicolaas Bouwes

Before-after-control-impact (BACI) experimental designs are commonly used in large-scale environmental experiments but these designs can be confounded by location and time interactions. Staircase designs, where replicate treatments are staggered temporally, have been suggested as an alternative to BACI designs. We performed a simulation study based on data from an ongoing watershed-scale restoration experiment within three streams to test the effectiveness of adding large wood to increase habitat complexity and abundance and productivity of juvenile steelhead (Oncorhynchus mykiss). We compared the power of two asymmetric BACI (aBACI) designs to two staircase designs for detecting changes in the density of steelhead (fish/m2). A staircase design where treatments were temporally staggered in one treatment section in each stream had the highest power and best precision, especially when the innate spatial and temporal variances of steelhead density were large. A traditional BACI performed the worst, and a variation on another BACI and staircase design had intermediate performance. Multi-stream staircase designs are also more logistically and economically feasible and can maximize learning by replicating experiments across different stream types.

2018 ◽  
Author(s):  
Tom M. Loughin ◽  
Stephen N. Bennett ◽  
Nicolaas W. Bouwes

AbstractBefore-after-control-impact (BACI) experimental designs are commonly used in large-scale experiments to test for environmental impacts. However, high natural variability of environmental conditions and populations, and low replication in both treatment and control areas in time and space hampers detection of responses. We compare the power of two asymmetric BACI (aBACI) designs to two staircase designs for detecting changes in juvenile steelhead (Oncorhynchus mykiss) abundance associated with a watershed-scale stream restoration experiment. We performed a simulation study to estimate the effect of a 25% increase in steelhead abundance using spatial and temporal estimates of variance from an ongoing study, and determined the power of each design. Experimental designs were then applied to three streams and each stream was composed of three 4 km long sections. We compared the power of a single treatment section in one stream (BACI-1), three simultaneous treatments of all sections in one stream (BACI-3), three sequential treatments in one stream (STAIRCASE-1), and three sequential treatments in one section in each stream (STAIRCASE-3). All designs had ≥ 94% power to detect a 25% increase in abundance assuming average variance. Under worst-case variance (i.e., upper 95% confidence limits of historical variance estimates), the STAIRCASE-3 design outperformed the BACI-1, BACI-3, and STAIRCASE-1 designs (i.e., 77%, 41%, 8%, and 33% power respectively). All the designs estimated the effect of the simulated 25% abundance increase, but the length of the confidence interval was much shorter for the STAIRCASE-3 design compared to the other designs, which had confidence intervals 58-596% longer. The STAIRCASE-3 design continued to have high power (88%) to detect a 10% change in abundance, but the power of the other designs was much lower (range 34-56%). Our study demonstrates that staircase designs can have significant advantages over BACI designs and therefore should be more widely used for testing environmental impacts.


2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Nicolaas Bouwes ◽  
Nicholas Weber ◽  
Chris E. Jordan ◽  
W. Carl Saunders ◽  
Ian A. Tattam ◽  
...  

Abstract Beaver have been referred to as ecosystem engineers because of the large impacts their dam building activities have on the landscape; however, the benefits they may provide to fluvial fish species has been debated. We conducted a watershed-scale experiment to test how increasing beaver dam and colony persistence in a highly degraded incised stream affects the freshwater production of steelhead (Oncorhynchus mykiss). Following the installation of beaver dam analogs (BDAs), we observed significant increases in the density, survival and production of juvenile steelhead without impacting upstream and downstream migrations. The steelhead response occurred as the quantity and complexity of their habitat increased. This study is the first large-scale experiment to quantify the benefits of beavers and BDAs to a fish population and its habitat. Beaver mediated restoration may be a viable and efficient strategy to recover ecosystem function of previously incised streams and to increase the production of imperiled fish populations.


2010 ◽  
Vol 162 (1) ◽  
pp. 208-216 ◽  
Author(s):  
K. Samaras ◽  
A. Zouboulis ◽  
T. Karapantsios ◽  
M. Kostoglou

2014 ◽  
Vol 60 ◽  
pp. 324-326 ◽  
Author(s):  
Y. Seki ◽  
T. Hashiguchi ◽  
H. Ota ◽  
S. Wang ◽  
A. Taketani ◽  
...  

2018 ◽  
Vol 35 (14) ◽  
pp. 2512-2514 ◽  
Author(s):  
Bongsong Kim ◽  
Xinbin Dai ◽  
Wenchao Zhang ◽  
Zhaohong Zhuang ◽  
Darlene L Sanchez ◽  
...  

Abstract Summary We present GWASpro, a high-performance web server for the analyses of large-scale genome-wide association studies (GWAS). GWASpro was developed to provide data analyses for large-scale molecular genetic data, coupled with complex replicated experimental designs such as found in plant science investigations and to overcome the steep learning curves of existing GWAS software tools. GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted for in the linear mixed model. GWASpro is optimized to handle GWAS data that may consist of up to 10 million markers and 10 000 samples from replicable lines or hybrids. GWASpro provides an interface that significantly reduces the learning curve for new GWAS investigators. Availability and implementation GWASpro is freely available at https://bioinfo.noble.org/GWASPRO. Supplementary information Supplementary data are available at Bioinformatics online.


2016 ◽  
Vol 79 ◽  
pp. 132-146
Author(s):  
A. Sarkar ◽  
R. Reiger ◽  
D. Chatterjee ◽  
S. Patranabis ◽  
H. Singh ◽  
...  

2016 ◽  
Vol 18 (26) ◽  
pp. 17461-17469 ◽  
Author(s):  
Z. Y. Hou ◽  
K. J. Dong ◽  
Z. A. Tian ◽  
R. S. Liu ◽  
Z. Wang ◽  
...  

The effect of the cooling rate on the solidification process of liquid aluminium is studied using a large-scale molecular dynamics method.


2011 ◽  
Vol 47 (9) ◽  
pp. 1197-1208 ◽  
Author(s):  
G. H. Yeoh ◽  
S. C. P. Cheung ◽  
J. Y. Tu ◽  
T. J. Barber

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