STUDIES ON THE PARASITISM AND VARIATION OF ALTERNARIA RAPHANI

1950 ◽  
Vol 28c (3) ◽  
pp. 288-317 ◽  
Author(s):  
R. G. Atkinson
Keyword(s):  
Soil Moisture ◽  
Natural Infection ◽  
The United States ◽  
Nutritional Requirements ◽  
Diseased Plant ◽  
Cultural Variation ◽  
Wild Type ◽  
Rate Of Growth ◽  
Type Strains ◽  
Radish Seed

The natural infection of radish seed with A. Raphani may result in a lack of germination, a pre- or postemergence blight, a distinctive lesioning of cotyledons and hypocotyls, the presence of scablike lesions on table radish, and in the spotting and blighting of leaves, stalks, and siliques. The fungus was isolated from the internal tissues of all parts of dormant radish seed. Although the pathogen has been reported only on radish in Canada and the United States, the present investigation shows that Canadian isolates are capable of causing a severe leaf blight of stocks and wallflowers. Under field conditions at St. Catharines, Ont., most rapid progress of the disease occurred at temperatures within the optimum range for the fungus, i.e., 22° to 26 °C. Experimental evidence suggests that A. Raphani does not establish an overwintering inoculum in the soil by means of diseased plant debris. Increased soil moisture was associated with increased seedling disease. At a high soil moisture content, infection was lowest at 18 °C.; at medium soil moisture, it was lowest at 18 °C. and also at 23 °C., the next highest experimental temperature.Monosporous isolations showed the presence of numerous wild type strains of A. Raphani which were closely related culturally. Five of these studied intensively differed widely in virulence and sporulation, but had similar growth rates and nutritional requirements for maximum growth. Although most isolates of A. Raphani produced only a few spores in ordinary agar cultures, abundant sporulation was obtained by wounding plate cultures and removing the lids of the culture plates. In agar culture, the wild types readily produced mostly appressed variant strains also showing close cultural relations. These variants exhibited wide differences in pathogenicity, rate of growth, and nutritional requirements, but all showed practically complete loss of sporulation either in normal or wounded cultures. The effects of cultural variation of wild type strains on cultural habit, pathogenicity, rate of growth, sporulating capacity, and nutritional requirements were random and unrelated. These data, as well as the spontaneous origin and irreversibility of the variants, favored the view that they arose in culture by mutation in the naturally occurring strains.A. Raphani was shown to be capable of surviving at least 18 months in dry soil cultures with no loss of cultural habit, virulence, or sporulation.Appreciable increase in emergence and decrease in seedling infection was obtained by seed treatments with some of the common fungicidal dusts.

scholarly journals Genetic Tools for Select-Agent-Compliant Manipulation of Burkholderia pseudomallei

2007 ◽  
Vol 74 (4) ◽  
pp. 1064-1075 ◽  
Author(s):  
Kyoung-Hee Choi ◽  
Takehiko Mima ◽  
Yveth Casart ◽  
Drew Rholl ◽  
Ayush Kumar ◽  
...  
Keyword(s):  
Burkholderia Pseudomallei ◽  
Natural Transformation ◽  
The United States ◽  
Broad Host Range ◽  
Wild Type ◽  
Chromosomal Dna ◽  
Site Specific ◽  
Genetic Manipulations ◽  
Type Strains ◽  
Selection Markers

ABSTRACT Because of Burkholderia pseudomallei's classification as a select agent in the United States, genetic manipulation of this bacterium is strictly regulated. Only a few antibiotic selection markers, including gentamicin, kanamycin, and zeocin, are currently approved for use with this bacterium, but wild-type strains are highly resistant to these antibiotics. To facilitate routine genetic manipulations of wild-type strains, several new tools were developed. A temperature-sensitive pRO1600 broad-host-range replicon was isolated and used to construct curable plasmids where the Flp and Cre recombinase genes are expressed from the rhamnose-regulated Escherichia coli PBAD promoter and kanamycin (nptI) and zeocin (ble) selection markers from the constitutive Burkholderia thailandensis ribosomal P S12 or synthetic bacterial P EM7 promoter. Flp and Cre site-specific recombination systems allow in vivo excision and recycling of nptII and ble selection markers contained on FRT or loxP cassettes. Finally, expression of Tn7 site-specific transposase from the constitutive P1 integron promoter allowed development of an efficient site-specific chromosomal integration system for B. pseudomallei. In conjunction with a natural transformation method, the utility of these new tools was demonstrated by isolating an unmarked Δ(amrRAB-oprA) efflux pump mutant. Exploiting natural transformation, chromosomal DNA fragments carrying this mutation marked with zeocin resistance were transferred between the genomes of two different B. pseudomallei strains. Lastly, the deletion mutation was complemented by a chromosomally integrated mini-Tn7 element carrying the amrAB-oprA operon. The new tools allow routine select-agent-compliant genetic manipulations of B. pseudomallei and other Burkholderia species.

In vitro and in vivo activities of AM-1155, a new fluoroquinolone, against Chlamydia spp.

1997 ◽  
Vol 41 (6) ◽  
pp. 1331-1334 ◽  
Author(s):  
N Miyashita ◽  
Y Niki ◽  
T Kishimoto ◽  
M Nakajima ◽  
T Matsushima
Keyword(s):  
United States ◽  
Body Weight ◽  
Survival Rate ◽  
Chlamydia Pneumoniae ◽  
The United States ◽  
Chlamydia Psittaci ◽  
Wild Type ◽  
Type Strains

The in vitro and in vivo activities of AM-1155, a new quinolone, against Chlamydia spp. were investigated. The MIC of AM-1155 for 10 standard strains of different Chlamydia spp. and 25 wild-type strains of Chlamydia pneumoniae isolated in Japan, which were morphologically different from clinical isolates from the United States, ranged from 0.063 to 0.125 microg/ml. Its activity was almost the same as those of sparfloxacin and tosufloxacin and was 4 and 16 times superior to those of levofloxacin and ciprofloxacin, respectively, but lower than those of clarithromycin and minocycline (range for each, 0.016 to 0.031 microg/ml). The minimal chlamydiacidal concentration of AM-1155 ranged from 0.063 to 0.125 microg/ml, while those of clarithromycin and minocycline ranged from 0.016 to 0.031 microg/ml and 0.016 to 0.063 microg/ml, respectively. The therapeutic effect of a 7-day course of AM-1155 at doses of 5 and 10 mg/kg of body weight administered orally twice daily to mice with experimental Chlamydia psittaci pneumonia was excellent, with a 100% survival rate at 21 days after infection. The efficacy was equal to those of clarithromycin and minocycline and higher than those of ciprofloxacin and ofloxacin.

scholarly journals Oxidative ornithine metabolism supports non-inflammatory C. difficile colonization

2022 ◽  
Author(s):  
Kali M. Pruss ◽  
Fatima Enam ◽  
Eric Battaglioli ◽  
Mary DeFeo ◽  
Oscar R. Diaz ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
The United States ◽  
Wild Type ◽  
Targeted Metabolomics ◽  
Disease Symptoms ◽  
Increased Risk ◽  
Infection And Inflammation ◽  
Gnotobiotic Mice ◽  
Single Operon ◽  
Type Strains

AbstractThe enteric pathogen Clostridioides difficile (Cd) is responsible for a toxin-mediated infection that causes more than 200,000 recorded hospitalizations and 13,000 deaths in the United States every year1. However, Cd can colonize the gut in the absence of disease symptoms. Prevalence of asymptomatic colonization by toxigenic Cd in healthy populations is high; asymptomatic carriers are at increased risk of infection compared to noncolonized individuals and may be a reservoir for transmission of Cd infection2,3. Elucidating the molecular mechanisms by which Cd persists in the absence of disease is necessary for understanding pathogenesis and developing refined therapeutic strategies. Here, we show with gut microbiome metatranscriptomic analysis that mice recalcitrant to Cd infection and inflammation exhibit increased community-wide expression of arginine and ornithine metabolic pathways. To query Cd metabolism specifically, we leverage RNA sequencing in gnotobiotic mice infected with two wild-type strains (630 and R20291) and isogenic toxin-deficient mutants of these strains to differentiate inflammation-dependent versus -independent transcriptional states. A single operon encoding oxidative ornithine degradation is consistently upregulated across non-toxigenic Cd strains. Combining untargeted and targeted metabolomics with bacterial and host genetics, we demonstrate that both diet- and host-derived sources of ornithine provide a competitive advantage to Cd, suggesting a mechanism for Cd persistence within a non-inflammatory, healthy gut.

scholarly journals Evidence that Chlamydia abortus vaccine strain 1B produces indistinguishable placental lesions to wild type strains

2020 ◽  
Vol 2 (7A) ◽  
Author(s):  
Sergio Gaston Caspe ◽  
David Frew ◽  
Elspeth Milne ◽  
Francesca Chianini ◽  
Tom McNeilly ◽  
...  
Keyword(s):  
Vaccine Strain ◽  
Natural Infection ◽  
Bacterial Load ◽  
Small Ruminants ◽  
Rflp Analysis ◽  
Molecular Evidence ◽  
Wild Type ◽  
Chlamydia Abortus ◽  
Vaccine Type ◽  
Type Strains

Chlamydia abortus is the most commonly diagnosed cause of abortion in small ruminants around the world [1]. Control of chlamydial abortion is achieved in several European countries using an attenuated live 1B C. abortus vaccine strain, which can be distinguished from virulent wild-type strains by PCR-RFLP analysis [2]. Application of this method has provided molecular evidence that the 1B strain can cause abortion in ewes [3, 4]. The objective of this study was to define the distribution of lesions and bacterial load in cotyledons from ewes vaccinated with the 1B strain compared to normal wild-type infections. A Chlamydia-free flock of 75 multiparous adult ewes were vaccinated twice, two years apart, each prior to mating, with the commercial 1B vaccine. In the second lambing season following the last vaccination, placentae (n=116) were collected and analysed by C. abortus real-time qPCR [3]. Only two of the placentae, both from the same ewe, were found to be positive. Viable organisms were isolated from these placentae and confirmed by RFLP-PCR [3] to be vaccine-type. All cotyledons from these placentae were analysed by histopathology and immunohistochemistry [5], and compared with those from wild-type infected placentae. The lesions in the vaccine-type infected placentae were indistinguishable from the wild-type infected placentae in terms of their severity, load and distribution. These results suggest that the 1B vaccine strain of C. abortus can cause chlamydial abortion in ewes producing typical placental lesions to wild-type infected animals, and could be circulating with the potential to cause natural infection and disease.

scholarly journals Field-Scale Soil Moisture Retrieval Using PALSAR-2 Polarimetric Decomposition and Machine Learning

Agronomy ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 35
Author(s):  
Xiaodong Huang ◽  
Beth Ziniti ◽  
Michael H. Cosh ◽  
Michele Reba ◽  
Jinfei Wang ◽  
...  
Keyword(s):  
Machine Learning ◽  
Soil Moisture ◽  
Canopy Cover ◽  
The United States ◽  
Optical Data ◽  
Study Region ◽  
Model Based ◽  
Key Indicator ◽  
Ground Measurement ◽  
L Band

Soil moisture is a key indicator to assess cropland drought and irrigation status as well as forecast production. Compared with the optical data which are obscured by the crop canopy cover, the Synthetic Aperture Radar (SAR) is an efficient tool to detect the surface soil moisture under the vegetation cover due to its strong penetration capability. This paper studies the soil moisture retrieval using the L-band polarimetric Phased Array-type L-band SAR 2 (PALSAR-2) data acquired over the study region in Arkansas in the United States. Both two-component model-based decomposition (SAR data alone) and machine learning (SAR + optical indices) methods are tested and compared in this paper. Validation using independent ground measurement shows that the both methods achieved a Root Mean Square Error (RMSE) of less than 10 (vol.%), while the machine learning methods outperform the model-based decomposition, achieving an RMSE of 7.70 (vol.%) and R2 of 0.60.

scholarly journals Identification ofvib-1, a Locus Involved in Vegetative Incompatibility Mediated byhet-cinNeurospora crassa

Genetics ◽  
2002 ◽  
Vol 162 (1) ◽  
pp. 89-101 ◽  
Author(s):  
Qijun Xiang ◽  
N Louise Glass
Keyword(s):  
Acid Phosphatase ◽  
Recognition System ◽  
Deletion Mutants ◽  
Wild Type ◽  
Vegetative Incompatibility ◽  
Death Rates ◽  
Self Recognition ◽  
Allelic Differences ◽  
Native Gel ◽  
Type Strains

AbstractA non-self-recognition system called vegetative incompatibility is ubiquitous in filamentous fungi and is genetically regulated by het loci. Different fungal individuals are unable to form viable heterokaryons if they differ in allelic specificity at a het locus. To identify components of vegetative incompatibility mediated by allelic differences at the het-c locus of Neurospora crassa, we isolated mutants that suppressed phenotypic aspects of het-c vegetative incompatibility. Three deletion mutants were identified; the deletions overlapped each other in an ORF named vib-1 (vegetative incompatibility blocked). Mutations in vib-1 fully relieved growth inhibition and repression of conidiation conferred by het-c vegetative incompatibility and significantly reduced hyphal compartmentation and death rates. The vib-1 mutants displayed a profuse conidiation pattern, suggesting that VIB-1 is a regulator of conidiation. VIB-1 shares a region of similarity to PHOG, a possible phosphate nonrepressible acid phosphatase in Aspergillus nidulans. Native gel analysis of wild-type strains and vib-1 mutants indicated that vib-1 is not the structural gene for nonrepressible acid phosphatase, but rather may regulate nonrepressible acid phosphatase activity.

scholarly journals HET-E and HET-D Belong to a New Subfamily of WD40 Proteins Involved in Vegetative Incompatibility Specificity in the Fungus Podospora anserina

Genetics ◽  
2002 ◽  
Vol 161 (1) ◽  
pp. 71-81
Author(s):  
Eric Espagne ◽  
Pascale Balhadère ◽  
Marie-Louise Penin ◽  
Christian Barreau ◽  
Béatrice Turcq
Keyword(s):  
Genetic Difference ◽  
Podospora Anserina ◽  
Wild Type ◽  
Incompatible Interaction ◽  
Vegetative Incompatibility ◽  
Repeat Domain ◽  
Upper Face ◽  
E1a Gene ◽  
Type Strains ◽  
Wd40 Repeats

Abstract Vegetative incompatibility, which is very common in filamentous fungi, prevents a viable heterokaryotic cell from being formed by the fusion of filaments from two different wild-type strains. Such incompatibility is always the consequence of at least one genetic difference in specific genes (het genes). In Podospora anserina, alleles of the het-e and het-d loci control heterokaryon viability through genetic interactions with alleles of the unlinked het-c locus. The het-d2Y gene was isolated and shown to have strong similarity with the previously described het-e1A gene. Like the HET-E protein, the HET-D putative protein displayed a GTP-binding domain and seemed to require a minimal number of 11 WD40 repeats to be active in incompatibility. Apart from incompatibility specificity, no other function could be identified by disrupting the het-d gene. Sequence comparison of different het-e alleles suggested that het-e specificity is determined by the sequence of the WD40 repeat domain. In particular, the amino acids present on the upper face of the predicted β-propeller structure defined by this domain may confer the incompatible interaction specificity.

scholarly journals Effects of B.1.1.7 and B.1.351 on COVID-19 Dynamics: A Campus Reopening Study

2021 ◽  
Author(s):  
Kevin Linka ◽  
Mathias Peirlinck ◽  
Amelie Schäfer ◽  
Oguz Ziya Tikenogullari ◽  
Alain Goriely ◽  
...  
Keyword(s):  
Online Education ◽  
The United States ◽  
Wild Type ◽  
Seir Model ◽  
Population Mixing ◽  
Santa Clara County ◽  
Increased Risk ◽  
Controversial Topic ◽  
Almost All ◽  
Local Reproduction

AbstractThe timing and sequence of safe campus reopening has remained the most controversial topic in higher education since the outbreak of the COVID-19 pandemic. By the end of March 2020, almost all colleges and universities in the United States had transitioned to an all online education and many institutions have not yet fully reopened to date. For a residential campus like Stanford University, the major challenge of reopening is to estimate the number of incoming infectious students at the first day of class. Here we learn the number of incoming infectious students using Bayesian inference and perform a series of retrospective and projective simulations to quantify the risk of campus reopening. We create a physics-based probabilistic model to infer the local reproduction dynamics for each state and adopt a network SEIR model to simulate the return of all undergraduates, broken down by their year of enrollment and state of origin. From these returning student populations, we predict the outbreak dynamics throughout the spring, summer, fall, and winter quarters using the inferred reproduction dynamics of Santa Clara County. We compare three different scenarios: the true outbreak dynamics under the wild-type SARS-CoV-2, and the hypothetical outbreak dynamics under the new COVID-19 variants B.1.1.7 and B.1.351 with 56% and 50% increased transmissibility. Our study reveals that even small changes in transmissibility can have an enormous impact on the overall case numbers. With no additional countermeasures, during the most affected quarter, the fall of 2020, there would have been 203 cases under baseline reproduction, compared to 4727 and 4256 cases for the B.1.1.7 and B.1.351 variants. Our results suggest that population mixing presents an increased risk for local outbreaks, especially with new and more infectious variants emerging across the globe. Tight outbreak control through mandatory quarantine and test-trace-isolate strategies will be critical in successfully managing these local outbreak dynamics.

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