scholarly journals Microsatellite evolution in sunfish (Centrarchidae)

1999 ◽  
Vol 56 (7) ◽  
pp. 1198-1205 ◽  
Author(s):  
Bryan D Neff ◽  
Peng Fu ◽  
Mart R Gross

We describe 10 microsatellite loci from bluegill (Lepomis macrochirus) and discuss their evolution within the Centrarchidae. All of the loci exhibit Mendelian inheritance and are unlinked. While six loci are conserved within the Centrarchidae (found also in pumpkinseed (Lepomis gibbosus) and largemouth bass (Micropterus salmoides)), four have origins outside the family and two predate it by 65-150 million years. The persistence of these loci in fish may be due to a slow rate of sequence divergence within their flanking sequences, estimated at 0.14-0.83% per million years. We examine the number of alleles, heterozygosity, range, modes, and the frequency of the most common allele and find that a two-phased model (TPM) or an infinite alleles-model (IAM) best describes the results, while a stepwise mutation model (SMM) is rejected. Therefore, population differentiation analyses utilizing these microsatellite loci should consider parameters based on the IAM (e.g., FST) and not the SMM.

Genetics ◽  
2003 ◽  
Vol 165 (3) ◽  
pp. 1475-1488
Author(s):  
V Vaughan Symonds ◽  
Alan M Lloyd

Abstract Microsatellite loci are among the most commonly used molecular markers. These loci typically exhibit variation for allele frequency distribution within a species. However, the factors contributing to this variation are not well understood. To expand on the current knowledge of microsatellite evolution, 20 microsatellite loci were examined for 126 accessions of the flowering plant, Arabidopsis thaliana. Substantial variability in mutation pattern among loci was found, most of which cannot be explained by the assumptions of the traditional stepwise mutation model or infinite alleles model. Here it is shown that the degree of locus diversity is strongly correlated with the number of contiguous repeats, more so than with the total number of repeats. These findings support a strong role for repeat disruptions in stabilizing microsatellite loci by reducing the substrate for polymerase slippage and recombination. Results of cluster analyses are also presented, demonstrating the potential of microsatellite loci for resolving relationships among accessions of A. thaliana.


Genetics ◽  
1995 ◽  
Vol 139 (1) ◽  
pp. 463-471 ◽  
Author(s):  
D B Goldstein ◽  
A Ruiz Linares ◽  
L L Cavalli-Sforza ◽  
M W Feldman

Abstract Mutations of alleles at microsatellite loci tend to result in alleles with repeat scores similar to those of the alleles from which they were derived. Therefore the difference in repeat score between alleles carries information about the amount of time that has passed since they shared a common ancestral allele. This information is ignored by genetic distances based on the infinite alleles model. Here we develop a genetic distance based on the stepwise mutation model that includes allelic repeat score. We adapt earlier treatments of the stepwise mutation model to show analytically that the expectation of this distance is a linear function of time. We then use computer simulations to evaluate the overall reliability of this distance and to compare it with allele sharing and Nei's distance. We find that no distance is uniformly superior for all purposes, but that for phylogenetic reconstruction of taxa that are sufficiently diverged, our new distance is preferable.


2021 ◽  
Vol 13 (5) ◽  
pp. 2486
Author(s):  
Jong-Yun Choi ◽  
Seong-Ki Kim

Empirical studies suggest that changes in the density of top predators, such as carnivorous fish, in freshwater food webs, strongly affect not only fish communities but also various primary and secondary consumers. Based on these findings, we explored how differences in the utilization of carnivorous fish (i.e., Northern Snakehead, Channa argus) by humans affected the fish and cladoceran community structure as well as the settlement of exotic fish species (i.e., Lepomis macrochirus and Micropterus salmoides) in 30 wetlands located in the upper and lower reaches of the Nakdong River. Our results show that in the mid–lower reaches of the Nakdong River, the density of C. argus was low, while high densities of L. macrochirus and M. salmoides were observed. Exotic fish species are frequently consumed by C. argus, leading to a low density of L. macrochirus and M. salmoides in the upper reaches, which supported a high density of C. argus. However, in the mid–lower reaches, the density of L. macrochirus was high because of the frequent collection of C. argus by fishing activities. The dominance of L. macrochirus significantly changed the structure of cladoceran communities. L. macrochirus mainly feeds on pelagic species, increasing the density of epiphytic species in the mid–lower reaches. The continued utilization of C. argus by humans induced a stable settlement of exotic fish species and strongly affected the community structures of primary consumers in the 30 wetlands. The frequency of C. argus collection has to be reduced to secure biodiversity in the mid–lower reaches of the Nakdong River, which will reduce the proportion of exotic fish species and increase the conservation of native fish.


1995 ◽  
Vol 73 (10) ◽  
pp. 1951-1959 ◽  
Author(s):  
Charles H. Jagoe ◽  
Dave A. Welter

Chromosome number and genomic DNA content vary widely among fish species, and ploidy can vary within species. This suggests that the size, shape, and morphological features of cell nuclei may also vary. Nucleated erythrocytes of fish are an easily sampled homogeneous population of differentiated cells ideal for inter- and intra-species comparisons. We collected blood samples from largemouth bass (Micropterus salmoides), bluegill (Lepomis macrochirus), chain pickerel (Esox niger), yellow perch (Perca flavescens), mosquitofish (Gambusia holbrooki), redeye bass (Micropterus coosae), and rainbow trout (Oncorhynchus mykiss) and removed cytoplasm and nuclear membranes from blood cells. Individual nuclei were examined and measured using scanning electron microscopy and a computerized image analysis system, and inter- and intra-species differences evaluated by nested analysis of variance. Nuclear size and shape varied significantly among species. Isolated nuclei had conspicuous apertures or holes, and the number and size of these holes also varied significantly among species. Variations in nuclear size and structure within species were small compared with interspecies differences. Little is known of the ultrastructure of erythrocyte nuclei in lower vertebrates, but their structure differs considerably from that of other vertebrate non-erythroid cells, suggesting that the organization of their DNA and associated proteins may be different.


Koedoe ◽  
2001 ◽  
Vol 44 (2) ◽  
Author(s):  
I.A. Russell

Fish assemblages were sampled at six sites in the Breede River in the Bontebok National Park during 1999 and 2000. A total of 380 fish from 12 species was recorded. Indigenous fish collected included one freshwater species (Barbus andrewi), two catodromous species (Anguilla mossambica, Myxus capensis). and three estuarine species (Gilchris- tella aestuaria, Monodactylusfalciformis, Mugil cephalus). Four of the species recorded were aliens (Tinea tinea, Lepomis macrochirus, Micropterus salmoides, Micropterus dolomieu) and two species translocated from other South African rivers (Tilapia sparrmanii, Clarias gariepinus). A further two indigenous species (Sandelia capensis, Pseudobarbus biirchelli) could potentially occur within the park, though the high abundance of alien predators means that there is little chance for recolonisation from tributaries higher in the Breede River system. There is little opportunity to meaningfully conserve most indigenous freshwater fish in Bontebok National Park.


2004 ◽  
Vol 61 (11) ◽  
pp. 2135-2143 ◽  
Author(s):  
Nathan J Dorn ◽  
Gary G Mittelbach

While crayfish are traditionally considered fish prey, they are capable of feeding on substrate-bound fish eggs and their introductions have been blamed for the decline in fish populations in Europe and North America. To investigate their potential effects on fish reproductive success we measured the effects of a native crayfish (Orconectes virilis) on the reproductive success of two substrate-nesting sunfish, pumpkinseed (Lepomis gibbosus) and bluegill (Lepomis macrochirus), in replicated pond experiments. Crayfish were observed feeding on eggs in both experiments. Crayfish presence delayed successful reproduction by pumpkinseeds in densely vegetated ponds, resulting in lower young-of-the-year biomass in ponds with crayfish. In the second experiment, with bluegills in less-vegetated ponds, crayfish prevented successful reproduction entirely. However, when we added crayfish-proof exclosures to the crayfish ponds late in the summer, bluegills located the crayfish-free habitat and successfully reproduced inside the exclosures (1 month after first successful reproduction in control ponds). The results of these experiments demonstrate the potential strong negative effects of crayfish on sunfish reproduction and suggest that the spatial distribution of crayfish and other egg predators may influence fish nesting behaviors and habitat choices. Further studies are needed to determine the magnitude of crayfish effects in natural lakes and ponds where sunfish and crayfish co-occur.


<em>Abstract.</em>—An investigation of historical fisheries information for pools 4–13 of the upper Mississippi River (UMR) was conducted to 1) determine the pre-1938 relative abundance and distribution of bluegill <em>Lepomis macrochirus </em>and largemouth bass <em>Micropterus salmoides, </em>2) determine the composition and relative abundance of the preimpoundment fish assemblage, and 3) determine if a shift in frequency of occurrence and relative abundance has occurred due to impoundment.


2020 ◽  
Vol 2 (1) ◽  
Author(s):  
J J Lomax ◽  
T F Martinson ◽  
Y E Jimenez ◽  
E L Brainerd

Synopsis In ray-finned fishes, the sternohyoideus (SH) is among the largest muscles in the head region and, based on its size, can potentially contribute to the overall power required for suction feeding. However, the function of the SH varies interspecifically. In largemouth bass (Micropterus salmoides) and several clariid catfishes, the SH functions similarly to a stiff ligament. In these species, the SH remains isometric and transmitts power from the hypaxial musculature to the hyoid apparatus during suction feeding. Alternatively, the SH can shorten and contribute muscle power during suction feeding, a condition observed in the bluegill sunfish (Lepomis macrochirus) and one clariid catfish. An emerging hypothesis centers on SH muscle size as a predictor of function: in fishes with a large SH, the SH shortens during suction feeding, whereas in fish with a smaller SH, the muscle may remain isometric. Here, we studied striped surfperch (Embiotoca lateralis), a species in which the SH is relatively large at 8.8% of axial muscle mass compared with 4.0% for L. macrochirus and 1.7% for M. salmoides, to determine whether the SH shortens during suction feeding and is, therefore, bifunctional—both transmitting and generating power—or remains isometric and only transmits power. We measured skeletal kinematics of the neurocranium, urohyal, and cleithrum with Video Reconstruction of Moving Morphology, along with muscle strain and shortening velocity in the SH and epaxial muscles, using a new method of 3D external marker tracking. We found mean SH shortening during suction feeding strikes (n = 22 strikes from four individual E. lateralis) was 7.2 ± 0.55% (±SEM) of initial muscle length. Mean peak speed of shortening was 4.9 ± 0.65 lengths s−1, and maximum shortening speed occurred right around peak gape when peak power is generated in suction feeding. The cleithrum of E. lateralis retracts and depresses but the urohyal retracts and depresses even more, a strong indicator of a bifunctional SH capable of not only generating its own power but also transmitting hypaxial power to the hyoid. While power production in E. lateralis is still likely dominated by the axial musculature, since even the relatively large SH of E. lateralis is only 8.8% of axial muscle mass, the SH may contribute a meaningful amount of power given its continual shortening just prior to peak gape across all strikes. These results support the finding from other groups of fishes that a large SH muscle, relative to axial muscle mass, is likely to both generate and transmit power during suction feeding.


The Condor ◽  
2007 ◽  
Vol 109 (4) ◽  
pp. 954-962
Author(s):  
Robert C. Fleischer ◽  
Beth Slikas ◽  
Jon Beadell ◽  
Colm Atkins ◽  
Carl E. McINTOSH ◽  
...  

Abstract The Millerbird (Acrocephalus familiaris) is an endemic Northwestern Hawaiian Islands reed warbler that existed until about 1923 on Laysan Island (A. f. familiaris) and currently occurs in a small population on Nihoa Island (A. f. kingi). The two populations are described as separate subspecies or species on the basis of size and plumage differences. We assessed genetic variation in blood samples from 15 individuals in the modern Nihoa population using approximately 3000 base pairs (bp) of mitochondrial DNA (mtDNA) sequence and 14 microsatellite loci. We also obtained up to 1028 bp of mtDNA sequence from the fragmented DNA of museum specimens of three birds collected on Nihoa in 1923 and five birds collected on Laysan in 1902 and 1911 (ancient samples). Genetic variation in both marker types was extremely low in the modern Nihoa population (nucleotide diversity [π]  =  0.00005 for mtDNA sequences; observed heterozygosity was 7.2% for the microsatellite loci). In contrast, we found three mtDNA haplotypes among the five Laysan individuals (π  =  0.0023), indicating substantially greater genetic variation. The Nihoa and Laysan taxa differed by 1.7% uncorrected mtDNA sequence divergence, a magnitude that would support designation at the subspecies, and perhaps species, level relative to other closely related Acrocephalus species pairs. However, in light of strong ecological similarity between the two taxa, and a need to have additional populations to prevent extinction from stochastic effects and catastrophes, we believe these genetic differences should not deter a potential translocation of individuals from Nihoa to Laysan.


Author(s):  
Vasco Menconi ◽  
Maria Vittoria Riina ◽  
Paolo Pastorino ◽  
Davide Mugetti ◽  
Serena Canola ◽  
...  

The genus Eustrongylides includes nematodes that infect fish species and fish-eating birds inhabiting freshwater ecosystems. Nematodes belonging to the genus Eustrongylides are potentially pathogenic for humans; infection occurs after the consumption of raw or undercooked fish. In the two-year period 2019–2020, a total of 292 fish belonging to eight species were examined for the occurrence of Eustrongylides spp. from Lake San Michele, a small subalpine lake in northwest Italy. The prevalence of infestation was 18.3% in Lepomis gibbosus, 16.7% in Micropterus salmoides, and 10% in Perca fluviatilis. The other five fish species (Ameiurus melas, Ictalurus punctatus, Squalius cephalus, Carassius carassius, and Scardinius erythrophthalmus) were all negative for parasite presence. There were no significant differences in prevalence between the three fish species (Fisher’s exact test; p = 0.744). The mean intensity of infestation ranged from 1 (M. salmoides and P. fluviatilis) to 1.15 (L. gibbosus), and the mean abundance ranged from 0.1 (P. fluviatilis) to 0.28 (L. gibbosus). There were significant differences in the infestation site between the four muscle quadrants (anterior ventral, anterior dorsal, posterior ventral, and posterior dorsal) and the visceral cavity (Kruskal–Wallis test; p = 0.0008). The study findings advance our knowledge about the distribution and host range of this parasite in Italy.


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