Range-wide patterns of allozyme variation in Douglas-fir (Pseudotsugamenziesii)

1989 ◽  
Vol 19 (2) ◽  
pp. 149-161 ◽  
Author(s):  
Peng Li ◽  
W. T. Adams
Keyword(s):  
Genetic Variation ◽  
Sierra Nevada ◽  
Allozyme Variation ◽  
Douglas Fir ◽  
Transition Zones ◽  
Seed Sources ◽  
Expected Heterozygosity ◽  
Major Exception ◽  
History Of ◽  
Geographical Locations

Seeds from 104 geographical locations throughout the range of Douglas-fir (Pseudotsugamenziesii (Mirb.) Franco) were analyzed at 20 enzyme loci to determine patterns of genetic variation and to make phylogenetic inferences. On average, the populations were polymorphic at 37% of the loci (range 5.0–65.0). Mean expected heterozygosity was 0.137 (range 0.021–0.239). Of the total genie diversity (HT = 0.182) observed, 24% was due to differentiation among populations. One Mexican population was genetically distinct from the rest of the species, which suggests the possibility of additional Pseudotsuga species in Mexico. The rest of the populations clustered into two groups corresponding to the recognized coastal and interior varieties. In addition, the interior variety separated into northern and southern subgroups near 44° latitude. Transition zones between the varieties were found to be narrower and more abrupt than has been suggested previously. Populations within the coastal variety and the northern interior subgroup averaged higher expected heterozygosity than the southern interior subgroup, but in the southern interior subgroup, populations were much more highly differentiated. Allozyme variation followed a latitudinal cline in the interior variety, but only weak geographical patterning was observed in the coastal variety. In general, genetic diversity decreased towards the periphery of the species range. Range-wide patterns of allozyme variation were similar to those in terpene studies, with the major exception that the Sierra Nevada seed sources in this study were closely aligned with the coastal variety rather than with the interior variety. Range-wide patterns of genetic variation in Douglas-fir largely reflect the evolutionary history of the species as revealed by paleobotanical studies.

Genetic variation in allozymes of western larch

1986 ◽  
Vol 16 (5) ◽  
pp. 1013-1018 ◽  
Author(s):  
Lauren Fins ◽  
Lisa W. Seeb
Keyword(s):  
Genetic Variation ◽  
Genetic Drift ◽  
Fire History ◽  
Glacial History ◽  
Geographic Proximity ◽  
Electrophoretic Variation ◽  
Inland Empire ◽  
Genetic History ◽  
Expected Heterozygosity ◽  
History Of

Seed samples from 19 stands of Larixoccidentalis Nutt. were analyzed for electrophoretic variation at 23 loci. Because sample sizes consisted of only 9 or 10 trees per stand (18–20 alleles per locus per stand), samples were grouped by geographic proximity into four larger samples. For all measures of variation, this species scored lower than most, but within the range observed for other western conifers. Most of the variation was found within rather than between the population groups. The single southern sample appeared to be genetically distinct from the others. Although some variation was observed between individual stand samples in expected heterozygosity, the consistently low values for all samples suggest that genetic drift has played a major role in the genetic history of the species in the Inland Empire, both through its glacial history in postulated refugia and through fire history in recent times.

Patterns of allozyme variation within and among Douglas-fir breeding zones in southwest Oregon

1987 ◽  
Vol 17 (5) ◽  
pp. 402-407 ◽  
Author(s):  
S. A. Merkle ◽  
W. T. Adams
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Gene Frequency ◽  
Quantitative Traits ◽  
Allozyme Variation ◽  
Douglas Fir ◽  
Expected Heterozygosity ◽  
Breeding Zone ◽  
Southwest Oregon ◽  
Environmental Distance

Gametophytes from wind-pollinated seeds of Douglas-fir (Pseudotsugamenziesii (Mirb.) Franco var. menziesii) parent trees (mean 56) in each of 22 breeding zones in southwest Oregon were analyzed electrophoretically for gene frequency patterns at 27 loci. Allozyme variability levels were high, as shown by breeding-zone averages for the percentage of polymorphic loci (71.7%, 0.99 criterion), mean number of alleles per locus (2.46), and expected heterozygosity (0.178). Differences among zones in allele frequency were significant (p < 0.05) for only 2 of the 27 loci surveyed, and analysis of hierarchical population structure showed that less than 1% of genetic diversity was attributable to differences among breeding zones. Genetic distance between zones was small [Formula: see text] and, in general, bore no relation to geographical or environmental distance. The limited allozyme differentiation among zones contrasts strikingly with the environment-related variation in seedling quantitative traits previously reported for southwest Oregon Douglas-fir. Allozymes do not appear to be useful for mapping patterns of adaptive variation or for certifying Douglas-fir seed in this region.

Population Genetics ofCaenorhabditis elegans: The Paradox of Low Polymorphism in a Widespread Species

Genetics ◽  
2003 ◽  
Vol 163 (1) ◽  
pp. 147-157 ◽  
Author(s):  
Arjun Sivasundar ◽  
Jody Hey
Keyword(s):  
Genetic Variation ◽  
Microsatellite Loci ◽  
Population Expansion ◽  
Widespread Species ◽  
C Elegans ◽  
Model Research ◽  
The World ◽  
Natural Isolates ◽  
History Of ◽  
Low Levels

AbstractCaenorhabditis elegans has become one of the most widely used model research organisms, yet we have little information on evolutionary processes and recent evolutionary history of this widespread species. We examined patterns of variation at 20 microsatellite loci in a sample of 23 natural isolates of C. elegans from various parts of the world. One-half of the loci were monomorphic among all strains, and overall genetic variation at microsatellite loci was low, relative to most other species. Some population structure was detected, but there was no association between the genetic and geographic distances among different natural isolates. Thus, despite the nearly worldwide occurrence of C. elegans, little evidence was found for local adaptation in strains derived from different parts of the world. The low levels of genetic variation within and among populations suggest that recent colonization and population expansion might have occurred. However, the patterns of variation are not consistent with population expansion. A possible explanation for the observed patterns is the action of background selection to reduce polymorphism, coupled with ongoing gene flow among populations worldwide.

scholarly journals POPULATION GENETICS OF ALLOZYME VARIATION IN NEUROSPORA INTERMEDIA

Genetics ◽  
1975 ◽  
Vol 80 (4) ◽  
pp. 785-805
Author(s):  
P T Spieth
Keyword(s):  
Genetic Variation ◽  
Vegetative Reproduction ◽  
Vascular Plant ◽  
Natural Populations ◽  
Allozyme Variation ◽  
Regular Feature ◽  
Local Populations ◽  
Neurospora Intermedia ◽  
Pattern Of Variation ◽  
High Level

ABSTRACT Electrophoretically detectable variation in the fungus Neurospora intermedia has been surveyed among isolates from natural populations in Malaya, Papua, Australia and Florida. The principal result is a pattern of genetic variation within and between populations that is qualitatively no different than the well documented patterns for Drosophila and humans. In particular, there is a high level of genetic variation, the majority of which occurs at the level of local populations. Evidence is presented which argues that N. intermedia has a population structure analogous to that of an annual vascular plant with a high level of vegetative reproduction. Sexual reproduction appears to be a regular feature in the biology of the species. Substantial heterokaryon function seems unlikely in natural populations of N. intermedia. Theoretical considerations concerning the mechanisms underlying the observed pattern of variation most likely should be consistent with haploid selection theory. The implications of this constraint upon the theory are discussed in detail, leading to the presentation of a model based upon the concept of environmental heterogeneity. The essence of the model, which is equally applicable to haploid and diploid situations, is a shifting distribution of multiple adaptive niches among local populations such that a given population has a small net selective pressure in favor of one allele or another, depending upon its particular distribution of niches. Gene flow among neighboring populations with differing net selective pressures is postulated as the principal factor underlying intrapopulational allozyme variation.

scholarly journals Genomic variation in the American pika: signatures of geographic isolation and implications for conservation

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Kelly B. Klingler ◽  
Joshua P. Jahner ◽  
Thomas L. Parchman ◽  
Chris Ray ◽  
Mary M. Peacock
Keyword(s):  
Genetic Variation ◽  
Genetic Structure ◽  
Sierra Nevada ◽  
Spatial Genetic Structure ◽  
Spatial Scales ◽  
Thermal Sensitivity ◽  
Genomic Variation ◽  
Genome Wide ◽  
A Genome ◽  
American Pika

Abstract Background Distributional responses by alpine taxa to repeated, glacial-interglacial cycles throughout the last two million years have significantly influenced the spatial genetic structure of populations. These effects have been exacerbated for the American pika (Ochotona princeps), a small alpine lagomorph constrained by thermal sensitivity and a limited dispersal capacity. As a species of conservation concern, long-term lack of gene flow has important consequences for landscape genetic structure and levels of diversity within populations. Here, we use reduced representation sequencing (ddRADseq) to provide a genome-wide perspective on patterns of genetic variation across pika populations representing distinct subspecies. To investigate how landscape and environmental features shape genetic variation, we collected genetic samples from distinct geographic regions as well as across finer spatial scales in two geographically proximate mountain ranges of eastern Nevada. Results Our genome-wide analyses corroborate range-wide, mitochondrial subspecific designations and reveal pronounced fine-scale population structure between the Ruby Mountains and East Humboldt Range of eastern Nevada. Populations in Nevada were characterized by low genetic diversity (π = 0.0006–0.0009; θW = 0.0005–0.0007) relative to populations in California (π = 0.0014–0.0019; θW = 0.0011–0.0017) and the Rocky Mountains (π = 0.0025–0.0027; θW = 0.0021–0.0024), indicating substantial genetic drift in these isolated populations. Tajima’s D was positive for all sites (D = 0.240–0.811), consistent with recent contraction in population sizes range-wide. Conclusions Substantial influences of geography, elevation and climate variables on genetic differentiation were also detected and may interact with the regional effects of anthropogenic climate change to force the loss of unique genetic lineages through continued population extirpations in the Great Basin and Sierra Nevada.

scholarly journals How geographic and climatic factors affect the adaptation of Douglas-fir provenances to the temperate continental climate zone in Europe

2021 ◽  
Author(s):  
Marzena Niemczyk ◽  
Daniel J. Chmura ◽  
Jarosław Socha ◽  
Tomasz Wojda ◽  
Piotr Mroczek ◽  
...  
Keyword(s):  
North America ◽  
Climatic Factors ◽  
Genetic Material ◽  
Test Site ◽  
Douglas Fir ◽  
Additional Advantage ◽  
Seed Sources ◽  
Precipitation Seasonality ◽  
Seed Origin ◽  
Continental Climate

AbstractThe contribution of Douglas-fir (Df) to European forests is likely to increase as the species is a potential adaptation option to climate change. In this study, we investigated growth and survival of Df seed sources to fill a knowledge gap regarding recommendations for the future use of Df provenances in Poland. Our experimental test site represents the most continental climate among all Df trials installed in the IUFRO 1966–67 test series in Europe. At this unique single site, we evaluated the performance of 46 Df provenances from North America, and nine local landraces of unknown origin. Repeated measurements of tree diameter, height, and volume were analysed, to age 48, representing integrated responses to geographic and climatic conditions. Significant variation in survival and productivity-related traits were found, with the interior Df provenances performing best, in contrast to previous European reports. The higher survivability and volume of the interior provenances resulted from their superior frost resistance. The low precipitation seasonality at the location of seed origin provided an additional advantage to the trees at the test site. Geographic and climatic factors of seed origin explained most of the variation in productivity (77 and 64%, respectively). The tested landraces exhibited diverse performance, implying that naturalized local seed sources in Poland need improvement and perhaps enrichment with new genetic material from North America, while considering geography and climate. Assisted migration programs should consider the limitations imposed by both frost and drought events in guiding future Df selections for continental climates. Further field testing, early greenhouse screening and DNA testing are also recommended.

3-Methylcyclohex-2-en-1-one and the Douglas-fir beetle (Coleoptera: Curculionidae): history of successful bark beetle pheromone treatments

2020 ◽  
Vol 153 (1) ◽  
pp. 62-78
Author(s):  
Darrell W. Ross
Keyword(s):  
Bark Beetle ◽  
Douglas Fir ◽  
Future Research ◽  
Beetle Species ◽  
Successful Management ◽  
Dendroctonus Pseudotsugae ◽  
Successful Development ◽  
History Of ◽  
Antiaggregation Pheromone

AbstractThis paper reviews the literature on the identification of 3-methylcyclohex-2-en-1-one (MCH) as the antiaggregation pheromone of the Douglas-fir beetle (Dendroctonus pseudotsugae Hopkins) (Coleoptera: Curculionidae) and the development of successful management applications using the pheromone. Previously unpublished data from two studies on novel uses of MCH are included. The successful development of antiaggregation pheromone-based treatments for the Douglas-fir beetle is discussed in relation to efforts to develop similar treatments for other bark beetle species, and opportunities for future research on MCH and the Douglas-fir beetle are suggested.

scholarly journals Genetic variation in native and farmed populations of Tambaqui (Colossoma macropomum) in the Brazilian Amazon: regional discrepancies in farming systems

2013 ◽  
Vol 85 (4) ◽  
pp. 1439-1447 ◽  
Author(s):  
Jonas Aguiar ◽  
Horacio Schneider ◽  
Fatima Gomes ◽  
Jeferson Carneiro ◽  
Simoni Santos ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Dna Sequences ◽  
Amazon Basin ◽  
Farming Systems ◽  
Wild Populations ◽  
The West ◽  
Colossoma Macropomum ◽  
Breeding Stock ◽  
History Of

The tambaqui, Colossoma macropomum, is the most popular fish species used for aquaculture in Brazil but there is no study comparing genetic variation among native and farmed populations of this species. In the present study, we analyzed DNA sequences of the mitochondrial DNA to evaluate the genetic diversity among two wild populations, a fry-producing breeding stock, and a sample of fish farm stocks, all from the region of Santarém, in the west of the Brazilian state of Pará. Similar levels of genetic diversity were found in all the samples and surprisingly the breeding stock showed expressive representation of the genetic diversity registered on wild populations. These results contrast considerably with those of the previous study of farmed stocks in the states of Amapá, Pará, Piauí, and Rondônia, which recorded only two haplotypes, indicating a long history of endogamy in the breeding stocks used to produce fry. The results of the two studies show two distinct scenarios of tambaqui farming in the Amazon basin, which must be better evaluated in order to guarantee the successful expansion of this activity in the region, and the rest of Brazil, given that the tambaqui and its hybrids are now farmed throughout the country.

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