Abstract 5374: Development of a method to measure acetylated histone H4 in the nuclei of circulating myeloid cells as a surrogate tissue for the pharmacodynamics of HDAC inhibitors in the treatment of solid tumors

Author(s):  
Jamieson David ◽  
Wai Wong ◽  
Gareth Veal
1999 ◽  
Vol 112 (7) ◽  
pp. 1045-1054 ◽  
Author(s):  
P. Collas ◽  
M.R. Liang ◽  
M. Vincent ◽  
P. Alestrom

We have investigated the functional organization of active and silent integrated luciferase transgenes in zebrafish, with the aim of accounting for the variegation of transgene expression in this species. We demonstrate the enrichment of transcriptionally active transgenes in acetylated histone H4 and the dynamic association of the transgenes with splicing factor SC35 and RNA Pol II. Analysis of interphase nuclei and extended chromatin fibers by immunofluorescence and in situ hybridization reveals a co-localization of transgenes with acetylated H4 in luciferase-expressing animals only. Enrichment of expressed transgenes in acetylated H4 is further demonstrated by their co-precipitation from chromatin using anti-acetylated H4 antibodies. Little correlation exists, however, between the level of histone acetylation and the degree of transgene expression. In transgene-expressing zebrafish, most transgenes co-localize with Pol II and SC35, whereas no such association occurs in non-expressing individuals. Inhibition of Pol II abolishes transgene expression and disrupts association of transgenes with SC35, although inactivated transgenes remains enriched in acetylated histones. Exposure of embryos to the histone deacetylation inhibitor TSA induces expression of most silent transgenes. Chromatin containing activated transgenes becomes enriched in acetylated histones and the transgenes recruit SC35 and Pol II. The results demonstrate a correlation between H4 acetylation and transgene activity, and argue that active transgenes dynamically recruit splicing factors and Pol II. The data also suggest that dissociation of splicing factors from transgenes upon Pol II inhibition is not a consequence of changes in H4 acetylation.


2006 ◽  
Vol 26 (7) ◽  
pp. 2791-2802 ◽  
Author(s):  
Melissa Durant ◽  
B. Franklin Pugh

ABSTRACT Histone acetylation regulates gene expression, yet the functional contributions of the numerous histone acetyltransferases (HATs) to gene expression and their relationships with each other remain largely unexplored. The central role of the putative HAT-containing TAF1 subunit of TFIID in gene expression raises the fundamental question as to what extent, if any, TAF1 contributes to acetylation in vivo and to what extent it is redundant with other HATs. Our findings herein do not support the basic tenet that TAF1 is a major HAT in Saccharomyces cerevisiae, nor do we find that TAF1 is functionally redundant with other HATs, including Gcn5, Elp3, Hat1, Hpa2, Sas3, and Esa1, which is in contrast to previous conclusions regarding Gcn5. Our findings do reveal that of these HATs, only Gcn5 and Esa1 contribute substantially to gene expression genome wide. Interestingly, histone acetylation at promoter regions throughout the genome does not require TAF1 or RNA polymerase II, indicating that most acetylation is likely to precede transcription and not depend upon it. TAF1 function has been linked to Bdf1, which binds TFIID and acetylated histone H4 tails, but no linkage between TAF1 and the H4 HAT Esa1 has been established. Here, we present evidence for such a linkage through Bdf1.


2006 ◽  
Vol 290 (2) ◽  
pp. F496-F502 ◽  
Author(s):  
Zhiyuan Yu ◽  
Bruce C. Kone

The inducible nitric oxide synthase (iNOS) gene plays an important role in the response to and propagation of injury in glomerular mesangial cells. Although several cis and trans regulatory factors have been characterized, epigenetic regulation of the iNOS gene has not been considered extensively. In this report, we explored the role of histone acetylation in interleukin (IL)-1β-mediated iNOS induction in cultured murine mesangial cells. Treatment of cells with the histone deacetylase inhibitor trichostatin A (TSA, 200 nM) resulted in a time-dependent, selective increase in histone H4 acetylation. TSA treatment of cells stably transfected with an iNOS promoter-luciferase construct inhibited IL-1β induction of endogenous nitric oxide and iNOS protein production and iNOS promoter-luciferase activity. Chromatin immunoprecipitation assays revealed that, under basal conditions, acetylated histone H4 associated with the region −978 to −710 of the iNOS promoter, a region rich in gene control elements and that IL-1β significantly increased this binding, which was further accentuated by cotreatment with TSA. Blockade of the phosphoinositide 3-kinase pathway with LY-294002 or the p70s6-kinase pathway with rapamycin in the presence of TSA and IL-1β inhibited 389Thr phosphorylation of p70s6 kinase, promoted binding of acetylated histone H4 to the iNOS promoter, and further suppressed iNOS protein expression and iNOS promoter activity. Thus TSA diminishes IL-1β-induced iNOS transcription through phosphoinositide 3-kinase- and p70s6 kinase-dependent pathways that increase site-specific histone H4 acetylation at the −978 to −710 region of the iNOS promoter. This novel epigenetic control mechanism extends the network of regulatory controls governing NO production in mesangial cells.


Chromosoma ◽  
1996 ◽  
Vol 105 (5) ◽  
pp. 293-302
Author(s):  
Shinya Idei ◽  
Katsuhiko Kondo ◽  
Bryan M. Turner ◽  
Kiichi Fukui

Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 4681-4681
Author(s):  
Mazyar Shadman ◽  
Sarah Gibson ◽  
Claudiu Cotta ◽  
Eric D. Hsi ◽  
Edward Copelan ◽  
...  

Abstract Abstract 4681 Background Histone acetylation is a post-translational modification used by proteins to regulate specific chromatin functions. Histone deacetylases (HDACs) play a pivotal role in the pathogenesis of a subset of acute myeloid leukemias (AMLs). HDAC inhibitors are currently being evaluated in clinical trials. We have previously demonstrated an association between increased histone H4 acetylation and increased relapse-free survival (RFS) in patients with newly diagnosed acute lymphocytic leukemia (ALL) (Advani et al., ASH abstract #2798, 2007) and improved overall survival (OS) in ALL patients with first relapse (Advani et al., ASH abstract #1482, 2008). Here, we evaluated the association between histone H4 acetylation with achievement of complete remission (CR) and also with RFS and OS in patients with newly diagnosed AML. Methods In this retrospective cohort study, we assessed H4 acetylation status in bone marrow biopsies of newly diagnosed AML patients at the Cleveland Clinic between the years 2003-2005. Association with CR, RFS and OS was assessed using univariate and multivariate logistic regression and cox-proportional hazard regression models. Variables used in the models included: age and WBC at diagnosis, gender, cytogenetic (CG) risk group, and history of antecedent hematologic disorder (AHD). CG risk group was ascribed per Cancer and Leukemia Group B criteria. B5-fixed bone marrow core biopsies were reviewed for areas of highest blast concentration. Immunohistochemistry was performed for acetyl-H4 (1:200 dilution; polyclonal; Upstate Biotech, Lake Placid, NY) using automated stainers and heat induced epitope retrieval. In each case, five hundred blasts were counted and only strong nuclear staining was classified as positive. Based on the distribution of cell counts, cases were classified as strongly positive if nuclear staining occurred in > 80% of the blasts. Results Eighty-one patients had adequate tissue and clinical data available. We restricted the analysis to sixty patients who received standard induction chemotherapy with cytarabine and an anthracycline. The median age was 58 years (range 20-79) and median WBC was 8.85 × 109/ L (range 0.8-227.9). Seven patients (11.6%) had favorable CG, 41 (68.3%) had intermediate, and 12 (20%) had poor risk CG. Thirty two percent of patients had an AHD. Thirteen patients (21.6%) received an allogeneic bone marrow transplant in first remission. The median follow-up time was 25.5 months (range 2.1-70.6). Forty five patients (75%) achieved CR and the median OS was 12.7 months (range 0.4-70.6). Using the 80% cut-off, 19 patients (31.6%) were positive for H4-acetylation. Histone (H4) acetylation was not associated with achievement of CR (OR=4.1, 95% CI 0.7-24.5, p=0.1) or relapse-free survival (HR 0.62, 95% CI 0.18-2.08, p=0.44). However, in multivariate analysis, histone acetylation was associated with a significantly better OS (HR=0.51, 95% CI 0.29-0.88, p=0.01). Inclusion of allogeneic transplant in the multivariate models did not change these estimates. Conclusion Strongly positive histone (H4) acetylation is associated with better OS in multi-variate analysis. The results mimic our previous findings in ALL patients. Further studies will need to include FLT3 and NPM status in patients with normal cytogenetics in the multi-variate model. These results provide a rationale for AML regimens incorporating HDAC inhibitors, and use of this assay as a potentially relevant biomarker during HDAC inhibitor therapy. Disclosures: No relevant conflicts of interest to declare.


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