Surrogate Population Models for Large-Scale Neural Simulations

2015 ◽  
Vol 27 (6) ◽  
pp. 1186-1222 ◽  
Author(s):  
Bryan P. Tripp

Because different parts of the brain have rich interconnections, it is not possible to model small parts realistically in isolation. However, it is also impractical to simulate large neural systems in detail. This article outlines a new approach to multiscale modeling of neural systems that involves constructing efficient surrogate models of populations. Given a population of neuron models with correlated activity and with specific, nonrandom connections, a surrogate model is constructed in order to approximate the aggregate outputs of the population. The surrogate model requires less computation than the neural model, but it has a clear and specific relationship with the neural model. For example, approximate spike rasters for specific neurons can be derived from a simulation of the surrogate model. This article deals specifically with neural engineering framework (NEF) circuits of leaky-integrate-and-fire point neurons. Weighted sums of spikes are modeled by interpolating over latent variables in the population activity, and linear filters operate on gaussian random variables to approximate spike-related fluctuations. It is found that the surrogate models can often closely approximate network behavior with orders-of-magnitude reduction in computational demands, although there are certain systematic differences between the spiking and surrogate models. Since individual spikes are not modeled, some simulations can be performed with much longer steps sizes (e.g., 20 ms). Possible extensions to non-NEF networks and to more complex neuron models are discussed.

2021 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Nikolaos Papanikolaou ◽  
Konstantinos Anyfantis

PurposeExperimental mid/large scale testing of ship-like stiffened panels in compression is a quite expensive exercise that is not standard. Numerical simulations are preferred instead. Because of being relatively inexpensive (cost and time wise), most authors perform an exhaustive design space exploration arriving at a significant number of runs. This work demonstrates that the buckling response with respect to the nondimensional slenderness ratios may well be fitted with nine runs per stiffener geometry.Design/methodology/approachEfficient derivation of buckling strength formulas for stiffened panels through the employment of design of experiments (DoE) and response surface methodology (RSM) combined with numerical nonlinear experimentation over the entire range of practical geometries.FindingsThe surrogate model developed for T-bar stiffeners predicts accurately enough the ultimate stress in the practical design area, while the surrogate models for angle bars and flat bars demonstrate difference between 10 and 30% from common structural rules (CSR).Originality/valueTo the authors' best knowledge, the statistical-based formal and rigorous approach of DoE and RSM to obtaining buckling surfaces for stiffened panels is performed for the first time. The number of required observations per stiffener type has not been addressed yet as each work selects its own sampling scheme without formal reasoning. This work comes to frame the number of observations for efficient surrogate model building.


2013 ◽  
Vol 444-445 ◽  
pp. 820-824
Author(s):  
Jun Qiang Bai ◽  
Ya Song Qiu ◽  
Lei Qiao

Applying common surrogate models to problems have numerous output variables is computational expensive, since the number of surrogate models should be constructed equals to the number of output variables. This paper presents an efficient strategy to solve this problem. For that, snapshot Proper Orthogonal Decomposition (POD) is used to extract a few main basis modes from certain number of samples. The predicted result of a large-scale output problem comes from the linear superposition of these basis modes. Common surrogate models just need to predict the coefficients for these basis modes. Through this strategy, The Mach numbers at 36864 points around an airfoil are predicted by just constructing 12 kriging surrogate models. The predicted Mach number distributions fit with the CFD results very well, that proves the efficiency of this strategy.


Author(s):  
Kevin Cremanns ◽  
Dirk Roos ◽  
Simon Hecker ◽  
Peter Dumstorff ◽  
Henning Almstedt ◽  
...  

The demand for energy is increasingly covered through renewable energy sources. As a consequence, conventional power plants need to respond to power fluctuations in the grid much more frequently than in the past. Additionally, steam turbine components are expected to deal with high loads due to this new kind of energy management. Changes in steam temperature caused by rapid load changes or fast starts lead to high levels of thermal stress in the turbine components. Therefore, todays energy market requires highly efficient power plants which can be operated under flexible conditions. In order to meet the current and future market requirements, turbine components are optimized with respect to multi-dimensional target functions. The development of steam turbine components is a complex process involving different engineering disciplines and time-consuming calculations. Currently, optimization is used most frequently for subtasks within the individual discipline. For a holistic approach, highly efficient calculation methods, which are able to deal with high dimensional and multidisciplinary systems, are needed. One approach to solve this problem is the usage of surrogate models using mathematical methods e.g. polynomial regression or the more sophisticated Kriging. With proper training, these methods can deliver results which are nearly as accurate as the full model calculations themselves in a fraction of time. Surrogate models have to face different requirements: the underlying outputs can be, for example, highly non-linear, noisy or discontinuous. In addition, the surrogate models need to be constructed out of a large number of variables, where often only a few parameters are important. In order to achieve good prognosis quality only the most important parameters should be used to create the surrogate models. Unimportant parameters do not improve the prognosis quality but generate additional noise to the approximation result. Another challenge is to achieve good results with as little design information as possible. This is important because in practice the necessary information is usually only obtained by very time-consuming simulations. This paper presents an efficient optimization procedure using a self-developed hybrid surrogate model consisting of moving least squares and anisotropic Kriging. With its maximized prognosis quality, it is capable of handling the challenges mentioned above. This enables time-efficient optimization. Additionally, a preceding sensitivity analysis identifies the most important parameters regarding the objectives. This leads to a fast convergence of the optimization and a more accurate surrogate model. An example of this method is shown for the optimization of a labyrinth shaft seal used in steam turbines. Within the optimization the opposed objectives of minimizing leakage mass flow and decreasing total enthalpy increase due to friction are considered.


2021 ◽  
Author(s):  
Ye Li ◽  
William Bosking ◽  
Michael S Beauchamp ◽  
Sameer A Sheth ◽  
Daniel Yoshor ◽  
...  

Narrowband gamma oscillations (NBG: ~20-60Hz) in visual cortex reflect rhythmic fluctuations in population activity generated by underlying circuits tuned for stimulus location, orientation, and color. Consequently, the amplitude and frequency of induced NBG activity is highly sensitive to these stimulus features. For example, in the non-human primate, NBG displays biases in orientation and color tuning at the population level. Such biases may relate to recent reports describing the large-scale organization of single-cell orientation and color tuning in visual cortex, thus providing a potential bridge between measurements made at different scales. Similar biases in NBG population tuning have been predicted to exist in the human visual cortex, but this has yet to be fully examined. Using intracranial recordings from human visual cortex, we investigated the tuning of NBG to orientation and color, both independently and in conjunction. NBG was shown to display a cardinal orientation bias (horizontal) and also an end- and mid-spectral color bias (red/blue and green). When jointly probed, the cardinal bias for orientation was attenuated and an end-spectral preference for red and blue predominated. These data both elaborate on the close, yet complex, link between the population dynamics driving NBG oscillations and known feature selectivity biases in visual cortex, adding to a growing set of stimulus dependencies associated with the genesis of NBG. Together, these two factors may provide a fruitful testing ground for examining multi-scale models of brain activity, and impose new constraints on the functional significance of the visual gamma rhythm.


2021 ◽  
Author(s):  
Brett W. Larsen ◽  
Shaul Druckmann

AbstractLateral and recurrent connections are ubiquitous in biological neural circuits. The strong computational abilities of feedforward networks have been extensively studied; on the other hand, while certain roles for lateral and recurrent connections in specific computations have been described, a more complete understanding of the role and advantages of recurrent computations that might explain their prevalence remains an important open challenge. Previous key studies by Minsky and later by Roelfsema argued that the sequential, parallel computations for which recurrent networks are well suited can be highly effective approaches to complex computational problems. Such “tag propagation” algorithms perform repeated, local propagation of information and were introduced in the context of detecting connectedness, a task that is challenging for feedforward networks. Here, we advance the understanding of the utility of lateral and recurrent computation by first performing a large-scale empirical study of neural architectures for the computation of connectedness to explore feedforward solutions more fully and establish robustly the importance of recurrent architectures. In addition, we highlight a tradeoff between computation time and performance and demonstrate hybrid feedforward/recurrent models that perform well even in the presence of varying computational time limitations. We then generalize tag propagation architectures to multiple, interacting propagating tags and demonstrate that these are efficient computational substrates for more general computations by introducing and solving an abstracted biologically inspired decision-making task. More generally, our work clarifies and expands the set of computational tasks that can be solved efficiently by recurrent computation, yielding hypotheses for structure in population activity that may be present in such tasks.Author SummaryLateral and recurrent connections are ubiquitous in biological neural circuits; intriguingly, this stands in contrast to the majority of current-day artificial neural network research which primarily uses feedforward architectures except in the context of temporal sequences. This raises the possibility that part of the difference in computational capabilities between real neural circuits and artificial neural networks is accounted for by the role of recurrent connections, and as a result a more detailed understanding of the computational role played by such connections is of great importance. Making effective comparisons between architectures is a subtle challenge, however, and in this paper we leverage the computational capabilities of large-scale machine learning to robustly explore how differences in architectures affect a network’s ability to learn a task. We first focus on the task of determining whether two pixels are connected in an image which has an elegant and efficient recurrent solution: propagate a connected label or tag along paths. Inspired by this solution, we show that it can be generalized in many ways, including propagating multiple tags at once and changing the computation performed on the result of the propagation. To illustrate these generalizations, we introduce an abstracted decision-making task related to foraging in which an animal must determine whether it can avoid predators in a random environment. Our results shed light on the set of computational tasks that can be solved efficiently by recurrent computation and how these solutions may appear in neural activity.


Author(s):  
Fan Zhou ◽  
Qiang Gao ◽  
Goce Trajcevski ◽  
Kunpeng Zhang ◽  
Ting Zhong ◽  
...  

Trajectory-User Linking (TUL) is an essential task in Geo-tagged social media (GTSM) applications, enabling personalized Point of Interest (POI) recommendation and activity identification. Existing works on mining mobility patterns often model trajectories using Markov Chains (MC) or recurrent neural networks (RNN) -- either assuming independence between non-adjacent locations or following a shallow generation process. However, most of them ignore the fact that human trajectories are often sparse, high-dimensional and may contain embedded hierarchical structures. We tackle the TUL problem with a semi-supervised learning framework, called TULVAE (TUL via Variational AutoEncoder), which learns the human mobility in a neural generative architecture with stochastic latent variables that span hidden states in RNN. TULVAE alleviates the data sparsity problem by leveraging large-scale unlabeled data and represents the hierarchical and structural semantics of trajectories with high-dimensional latent variables. Our experiments demonstrate that TULVAE improves efficiency and linking performance in real GTSM datasets, in comparison to existing methods.


Author(s):  
Daniel Deitch ◽  
Alon Rubin ◽  
Yaniv Ziv

AbstractNeuronal representations in the hippocampus and related structures gradually change over time despite no changes in the environment or behavior. The extent to which such ‘representational drift’ occurs in sensory cortical areas and whether the hierarchy of information flow across areas affects neural-code stability have remained elusive. Here, we address these questions by analyzing large-scale optical and electrophysiological recordings from six visual cortical areas in behaving mice that were repeatedly presented with the same natural movies. We found representational drift over timescales spanning minutes to days across multiple visual areas. The drift was driven mostly by changes in individual cells’ activity rates, while their tuning changed to a lesser extent. Despite these changes, the structure of relationships between the population activity patterns remained stable and stereotypic, allowing robust maintenance of information over time. Such population-level organization may underlie stable visual perception in the face of continuous changes in neuronal responses.


2014 ◽  
Vol 26 (5) ◽  
pp. 1085-1099 ◽  
Author(s):  
Maureen Ritchey ◽  
Andrew P. Yonelinas ◽  
Charan Ranganath

Neural systems may be characterized by measuring functional interactions in the healthy brain, but it is unclear whether components of systems defined in this way share functional properties. For instance, within the medial temporal lobes (MTL), different subregions show different patterns of cortical connectivity. It is unknown, however, whether these intrinsic connections predict similarities in how these regions respond during memory encoding. Here, we defined brain networks using resting state functional connectivity (RSFC) then quantified the functional similarity of regions within each network during an associative memory encoding task. Results showed that anterior MTL regions affiliated with a network of anterior temporal cortical regions, whereas posterior MTL regions affiliated with a network of posterior medial cortical regions. Importantly, these connectivity relationships also predicted similarities among regions during the associative memory task. Both in terms of task-evoked activation and trial-specific information carried in multivoxel patterns, regions within each network were more similar to one another than were regions in different networks. These findings suggest that functional heterogeneity among MTL subregions may be related to their participation in distinct large-scale cortical systems involved in memory. At a more general level, the results suggest that components of neural systems defined on the basis of RSFC share similar functional properties in terms of recruitment during cognitive tasks and information carried in voxel patterns.


2017 ◽  
Vol 20 (1) ◽  
pp. 164-176 ◽  
Author(s):  
Vasileios Christelis ◽  
Rommel G. Regis ◽  
Aristotelis Mantoglou

Abstract The computationally expensive variable density and salt transport numerical models hinder the implementation of simulation-optimization routines for coastal aquifer management. To reduce the computational cost, surrogate models have been utilized in pumping optimization of coastal aquifers. However, it has not been previously addressed whether surrogate modelling is effective given a limited number of numerical simulations with the seawater intrusion model. To that end, two surrogate-based optimization (SBO) frameworks are employed and compared against the direct optimization approach, under restricted computational budgets. The first, a surrogate-assisted algorithm, employs a strategy which aims at a fast local improvement of the surrogate model around optimal values. The other, balances global and local improvement of the surrogate model and is applied for the first time in coastal aquifer management. The performance of the algorithms is investigated for optimization problems of moderate and large dimensionalities. The statistical analysis indicates that for the specified computational budgets, the sample means of the SBO methods are statistically significantly better than those of the direct optimization. Additionally, the selection of cubic radial basis functions as surrogate models, enables the construction of very fast approximations for problems with up to 40 decision variables and 40 constraint functions.


Sign in / Sign up

Export Citation Format

Share Document