Occurrence and abundance of nematodes on onion in Turkey and their relationship with soil physicochemical properties

Nematology ◽  
2019 ◽  
Vol 21 (10) ◽  
pp. 1063-1079
Author(s):  
Elif Yavuzaslanoglu ◽  
Ozlem Ates Sonmezoglu ◽  
Nimet Genc ◽  
Z. Mutlu Akar ◽  
Atilla Ocal ◽  
...  
Keyword(s):  
Large Scale ◽  
Calcium Content ◽  
Nematode Species ◽  
Free Living ◽  
Plant Feeding ◽  
Pratylenchus Thornei ◽  
Geographical Regions ◽  
Ditylenchus Dipsaci ◽  
Lesion Nematode ◽  
Production Areas

Summary The distribution of plant-feeding and free-living nematodes in large scale onion production areas in five geographical regions in Turkey was investigated in 2016 and 2017. Ditylenchus spp. and Tylenchus spp. were widely distributed. The stem and bulb nematode, Ditylenchus dipsaci, was found in 48 locations from 13 provinces. Other plant-feeding nematode genera were Pratylenchus, Paratylenchus and Pratylenchoides. Pratylenchus thornei was the most widely distributed root-lesion nematode species in onion fields in 11 locations from seven provinces. Pratylenchus neglectus was present in three locations and P. vulnus was in four locations. Aphelenchus spp. and Aphelenchoides spp. were the principal fungal-feeding nematodes in onion-growing areas. The most abundant bacterial-feeding nematode genera were Acrobeloides, Cephalobus, Eucephalobus and Rhabditis. Acrobeles and Wilsonema genera were low in occurrence and abundance. Nematodes from Dorylaimida and predator nematodes, Mononchus spp., were also found. The numbers of Ditylenchus from plant samples were significantly correlated positively to silt content, and significantly correlated negatively to organic matter and calcium content.

scholarly journals Transcriptome analysis reveals key genes associated with root-lesion nematode Pratylenchus thornei resistance in chickpea

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sonal Channale ◽  
Danamma Kalavikatte ◽  
John P. Thompson ◽  
Himabindu Kudapa ◽  
Prasad Bajaj ◽  
...  
Keyword(s):  
Nematode Species ◽  
Post Inoculation ◽  
Root Lesion Nematode ◽  
Resistant Genotype ◽  
Functional Roles ◽  
Pratylenchus Thornei ◽  
Significant Yield ◽  
Lesion Nematode ◽  
Underlying Mechanisms ◽  
Moderately Resistant

AbstractThe root-lesion nematode, Pratylenchus thornei, is one of the major plant-parasitic nematode species causing significant yield losses in chickpea (Cicer arietinum). In order to identify the underlying mechanisms of resistance to P. thornei, the transcriptomes of control and inoculated roots of three chickpea genotypes viz. D05253 > F3TMWR2AB001 (resistant advanced breeding line), PBA HatTrick (moderately resistant cultivar), and Kyabra (susceptible cultivar) were studied at 20 and 50 days post inoculation using the RNA-seq approach. On analyzing the 633.3 million reads generated, 962 differentially expressed genes (DEGs) were identified. Comparative analysis revealed that the majority of DEGs upregulated in the resistant genotype were downregulated in the moderately resistant and susceptible genotypes. Transcription factor families WRKY and bZIP were uniquely expressed in the resistant genotype. The genes Cysteine-rich receptor-like protein kinase 10, Protein lifeguard-like, Protein detoxification, Bidirectional sugar transporter Sugars Will Eventually be Exported Transporters1 (SWEET1), and Subtilisin-like protease were found to play cross-functional roles in the resistant chickpea genotype against P. thornei. The identified candidate genes for resistance to P. thornei in chickpea can be explored further to develop markers and accelerate the introgression of P. thornei resistance into elite chickpea cultivars.

Perspiria boucheri sp. nov. (Nematoda, Desmodorida) from the East China Sea

Zootaxa ◽  
2019 ◽  
Vol 4695 (2) ◽  
pp. 195-200
Author(s):  
JING SUN ◽  
HONGXIU ZHAI ◽  
YONG HUANG
Keyword(s):  
New Species ◽  
East China Sea ◽  
Buccal Cavity ◽  
Nematode Species ◽  
East China ◽  
Similar Species ◽  
Marine Nematode ◽  
The East China Sea ◽  
Free Living ◽  
China Sea

A new free-living marine nematode species from marine sediments in the East China Sea, is described here as Perspiria boucheri sp. nov. The new species is characterized by amphideal fovea surrounded partially by body annulations; four cephalic setae stout; conical buccal cavity with a minute dorsal tooth and two ventrosublateral teeth; pharynx with a pyriform terminal bulb; tail elongated, conical with 3/4 posterior cylindrical portion which having distinct coarse annulations; spicules strongly curved with narrow ventral velum, handle-shaped proximally; gubernaculum canoe-shaped, without apophysis. The new species differs from the most similar species Perspiria striaticaudata (Timm, 1962) by strongly curved spicules with handle-shaped proximal end, gubernaculum without dorsal apophysis and relatively shorter tail. Updated key to all species of Perspiria is provided. 

scholarly journals Biogeography of acoustic biodiversity of NW Mediterranean coralligenous reefs

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Lucia Di Iorio ◽  
Manon Audax ◽  
Julie Deter ◽  
Florian Holon ◽  
Julie Lossent ◽  
...  
Keyword(s):  
Large Scale ◽  
Spatial Scales ◽  
Western Mediterranean ◽  
Ecosystem Functions ◽  
Marine Biodiversity ◽  
Predator Species ◽  
The North ◽  
Mediterranean Habitats ◽  
Geographical Regions ◽  
Nw Mediterranean

AbstractMonitoring the biodiversity of key habitats and understanding the drivers across spatial scales is essential for preserving ecosystem functions and associated services. Coralligenous reefs are threatened marine biodiversity hotspots that are challenging to monitor. As fish sounds reflect biodiversity in other habitats, we unveiled the biogeography of coralligenous reef sounds across the north-western Mediterranean using data from 27 sites covering 2000 km and 3 regions over a 3-year period. We assessed how acoustic biodiversity is related to habitat parameters and environmental status. We identified 28 putative fish sound types, which is up to four times as many as recorded in other Mediterranean habitats. 40% of these sounds are not found in other coastal habitats, thus strongly related to coralligenous reefs. Acoustic diversity differed between geographical regions. Ubiquitous sound types were identified, including sounds from top-predator species and others that were more specifically related to the presence of ecosystem engineers (red coral, gorgonians), which are key players in maintaining habitat function. The main determinants of acoustic community composition were depth and percentage coverage of coralligenous outcrops, suggesting that fish-related acoustic communities exhibit bathymetric stratification and are related to benthic reef assemblages. Multivariate analysis also revealed that acoustic communities can reflect different environmental states. This study presents the first large-scale map of acoustic fish biodiversity providing insights into the ichthyofauna that is otherwise difficult to assess because of reduced diving times. It also highlights the potential of passive acoustics in providing new aspects of the correlates of biogeographical patterns of this emblematic habitat relevant for monitoring and conservation.

Metabolomic profiling of wheat genotypes resistant and susceptible to root-lesion nematode Pratylenchus thornei

2021 ◽  
Author(s):  
Md Motiur Rahaman ◽  
Rebecca S. Zwart ◽  
Thusitha W. T. Rupasinghe ◽  
Helen L. Hayden ◽  
John P. Thompson
Keyword(s):  
Root Lesion Nematode ◽  
Wheat Genotypes ◽  
Metabolomic Profiling ◽  
Pratylenchus Thornei ◽  
Lesion Nematode

Ten New Records of Free-living Nematodes from Uttarakhand, India

2018 ◽  
Vol 41 (1) ◽  
pp. 39-42
Author(s):  
Vinita Sharma ◽  
Keyword(s):  
Medicinal Plants ◽  
New Records ◽  
Nematode Species ◽  
Forest Trees ◽  
Wildlife Sanctuary ◽  
Free Living ◽  
First Time

Ten nematode species of order Dorylaimida were recorded for the first time from Uttarakhand during survey of terrestrial nematodes associated with forest trees and medicinal plants in Govind Wildlife Sanctuary, Uttarkashi, Uttarakhand, India.

scholarly journals Development and validation of prediction models to estimate risk of primary total hip and knee replacements using data from the UK: two prospective open cohorts using the UK Clinical Practice Research Datalink

2018 ◽  
Vol 78 (1) ◽  
pp. 91-99 ◽  
Author(s):  
Dahai Yu ◽  
Kelvin P Jordan ◽  
Kym I E Snell ◽  
Richard D Riley ◽  
John Bedson ◽  
...  
Keyword(s):  
Clinical Practice ◽  
Large Scale ◽  
Prediction Models ◽  
Cox Proportional Hazards ◽  
Practice Research ◽  
Clinical Practice Research Datalink ◽  
Total Hip ◽  
Risk Of Death ◽  
Geographical Regions ◽  
The Uk

ObjectivesThe ability to efficiently and accurately predict future risk of primary total hip and knee replacement (THR/TKR) in earlier stages of osteoarthritis (OA) has potentially important applications. We aimed to develop and validate two models to estimate an individual’s risk of primary THR and TKR in patients newly presenting to primary care.MethodsWe identified two cohorts of patients aged ≥40 years newly consulting hip pain/OA and knee pain/OA in the Clinical Practice Research Datalink. Candidate predictors were identified by systematic review, novel hypothesis-free ‘Record-Wide Association Study’ with replication, and panel consensus. Cox proportional hazards models accounting for competing risk of death were applied to derive risk algorithms for THR and TKR. Internal–external cross-validation (IECV) was then applied over geographical regions to validate two models.Results45 predictors for THR and 53 for TKR were identified, reviewed and selected by the panel. 301 052 and 416 030 patients newly consulting between 1992 and 2015 were identified in the hip and knee cohorts, respectively (median follow-up 6 years). The resultant model C-statistics is 0.73 (0.72, 0.73) and 0.79 (0.78, 0.79) for THR (with 20 predictors) and TKR model (with 24 predictors), respectively. The IECV C-statistics ranged between 0.70–0.74 (THR model) and 0.76–0.82 (TKR model); the IECV calibration slope ranged between 0.93–1.07 (THR model) and 0.92–1.12 (TKR model).ConclusionsTwo prediction models with good discrimination and calibration that estimate individuals’ risk of THR and TKR have been developed and validated in large-scale, nationally representative data, and are readily automated in electronic patient records.

The soil-inhabiting nematodes for Macquarie Island.

1954 ◽  
Vol 2 (2) ◽  
pp. 264 ◽  
Author(s):  
JS Bunt
Keyword(s):  
Nematode Species ◽  
Relative Importance ◽  
Free Living ◽  
Macquarie Island ◽  
Algae And Bacteria

The numbers of free-living nematodes in more than 40 Macquarie I. soils were recorded at three different times during the year. The principal conditions affecting the populations have been discussed and it is concluded that the numbers and types of algae and bacteria in the soil are of major importance since most of the nematode species identified are believed to feed on these groups of microorganisms. An attempt has been made to assess the relative importance of nematodes in processes of decomposition in Macquarie I. soils.

scholarly journals A Molecular Survey on Neglected Gurltia paralysans and Aelurostrongylus abstrusus Infections in Domestic Cats (Felis catus) from Southern Chile

Pathogens ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1195
Author(s):  
Natasha Barrios ◽  
Marcelo Gómez ◽  
Macarena Zanelli ◽  
Lisbeth Rojas-Barón ◽  
Paulina Sepúlveda-García ◽  
...  
Keyword(s):  
Risk Factors ◽  
Large Scale ◽  
Nematode Species ◽  
Epidemiological Studies ◽  
Felis Catus ◽  
Domestic Cat ◽  
Southern Chile ◽  
Domestic Cats ◽  
Aelurostrongylus Abstrusus ◽  
Factors Associated

Gurltia paralysans and Aelurostrongylus abstrusus are neglected metastrongyloid nematode species which infect domestic and wild cats in South American countries and in Chile, but no epidemiological studies on concomitant infections have been conducted in Chile so far. The aim of this study was not only to evaluate the occurrence of concomitant infections, but also to identify epidemiological risk factors associated with of G. paralysans and A. abstrusus infections in urban domestic cats (Felis catus) from Southern Chile. Blood samples from clinically healthy domestic cats from three cities of Southern Chile—Temuco, Valdivia, and Puerto Montt—were analyzed by an experimental semi-nested PCR protocol. A total of 171 apparently healthy domestic cats in Temuco (n = 68), Valdivia (n = 50), and Puerto Montt (n = 53) were sampled and analyzed. A total of 93 domestic cats (54.4%) were positive for G. paralysans, and 34 (19.9%) were positive for A. abstrusus infections. From those animals, 34 (19.9%) were co-infected. Cats positive with G. paralysans were found in all three cities; 47.2% in Puerto Montt, 48% in Valdivia, and 64.7% in Temuco. Levels of infection for A. abstrusus in the population under study were 4% (Valdivia), 10% (Puerto Montt), and 32.4% (Temuco). The present large-scale epidemiological study confirmed the presence of these neglected nematodes in domestic cat populations in Southern Chile, and described the possible risk factors associated with feline gurltiosis and aelurostrongylosis.

scholarly journals Inter-comparison of daily precipitation products for large-scale hydro-climatic applications over Canada

2017 ◽  
Vol 21 (4) ◽  
pp. 2163-2185 ◽  
Author(s):  
Jefferson S. Wong ◽  
Saman Razavi ◽  
Barrie R. Bonsal ◽  
Howard S. Wheater ◽  
Zilefac E. Asong
Keyword(s):  
Large Scale ◽  
Spatial And Temporal Variability ◽  
The North ◽  
Global Precipitation Climatology Centre ◽  
Multiple Data ◽  
Geographical Regions ◽  
Central Canada ◽  
Different Seasons ◽  
Spatio Temporal ◽  
Global Precipitation

Abstract. A number of global and regional gridded climate products based on multiple data sources are available that can potentially provide reliable estimates of precipitation for climate and hydrological studies. However, research into the consistency of these products for various regions has been limited and in many cases non-existent. This study inter-compares several gridded precipitation products over 15 terrestrial ecozones in Canada for different seasons. The spatial and temporal variability of the errors (relative to station observations) was quantified over the period of 1979 to 2012 at a 0.5° and daily spatio-temporal resolution. These datasets were assessed in their ability to represent the daily variability of precipitation amounts by four performance measures: percentage of bias, root mean square error, correlation coefficient, and standard deviation ratio. Results showed that most of the datasets were relatively skilful in central Canada. However, they tended to overestimate precipitation amounts in the west and underestimate in the north and east, with the underestimation being particularly dominant in northern Canada (above 60° N). The global product by WATCH Forcing Data ERA-Interim (WFDEI) augmented by Global Precipitation Climatology Centre (GPCC) data (WFDEI [GPCC]) performed best with respect to different metrics. The Canadian Precipitation Analysis (CaPA) product performed comparably with WFDEI [GPCC]; however, it only provides data starting in 2002. All the datasets performed best in summer, followed by autumn, spring, and winter in order of decreasing quality. Findings from this study can provide guidance to potential users regarding the performance of different precipitation products for a range of geographical regions and time periods.

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