scholarly journals No lab is an island: universal coding of laboratory test names

2021 ◽  
pp. 104063872199482
Author(s):  
Michael K. Martin

The local laboratory with a local client-base, that never needs to exchange information with any outside entity, is a dying breed. As marketing channels, animal movement, and reporting requirements become increasingly national and international, the need to communicate about laboratory tests and results grows. Local and proprietary names of laboratory tests often fail to communicate enough detail to distinguish between similar tests. To avoid a lengthy description of each test, laboratories need the ability to assign codes that, although not sufficiently user-friendly for day-to-day use, contain enough information to translate between laboratories and even languages. The Logical Observation Identifiers Names and Codes (LOINC) standard provides such a universal coding system. Each test—each atomic observation—is evaluated on 6 attributes that establish its uniqueness at the level of clinical—or epidemiologic—significance. The analyte detected, analyte property, specimen, and result scale combine with the method of analysis and timing (for challenge and metabolic type tests) to define a unique LOINC code. Equipping laboratory results with such universal identifiers creates a world of opportunity for cross-institutional data exchange, aggregation, and analysis, and presents possibilities for data mining and artificial intelligence on a national and international scale. A few challenges, relatively unique to regulatory veterinary test protocols, require special handling.

2018 ◽  
Vol 13 ◽  
pp. 3281-3287
Author(s):  
Ahmed Zamzam ◽  
Alaa A. Qaffas

Without a common format, the financial community has been constantly penalized by the data exchange process. Currently, when financial data are dematerialized, they are exchanged in a multitude of formats: Excel files, free text, PDF, etc. Often not much more suitable for processing than photocopying and limited to certain platforms, these formats prove unsuitable for the exchange of information between programs, for analysis, comparison and presentation of reports to users. So far, despite a strong tendency to use XML syntax, attempts at convergence have struggled to generalize and apply to many sectors and contexts.In recent years, reporting requirements have led to a significant increase in the cost of using financial systems. The use of XBRL technology, using XML syntax, supported by many players in the world of finance, the software industry and adapted to reporting, can constitute the solution. Many governments, regulators, financial institutions are already using XBRL or have pilot projects in place.This document specifically targets XBRL. This technology, which is now recognized by the entire software industry, provides tremendous benefits for data exchange, storage, research and processing.


2000 ◽  
Vol 6 (1_suppl) ◽  
pp. 160-161 ◽  
Author(s):  
Peter Sögner ◽  
Klaus Goidinger ◽  
Dietmar Reiter ◽  
Alfons Stoeger ◽  
Dieter Zur Nedden

We assessed a data security system using biometric fingerprint techniques and smartcards to control access to a teleradiology system. Clinical cases were initially discussed between the referring physician and radiologist in Tyrol using a video-phone. Subsequent correspondence, including the transmission of images between the referring physician and the radiologist, was carried out by email using the security system to prevent unauthorized access to patient information. Seventy-eight teleradiology sessions were conducted using this data security system. Speed and stability of data exchange were unaffected by the additional security feature. The average log-on time to the system was 7.8 s. The average training time on how to use the system was 15 min. The radiologist was able to issue a final patient report using the system within 1.5 of the initial contact. The data security feature was user-friendly and did not hinder the normal teleradiology consultation.


Author(s):  
Mariana Haeberer ◽  
Svetla Tsolova ◽  
Paul Riley ◽  
Rosa Cano-Portero ◽  
Ute Rexroth ◽  
...  

ABSTRACT Recent international communicable disease crises have highlighted the need for countries to assure their preparedness to respond effectively to public health emergencies. The objective of this study was to critically review existing tools to support a country’s assessment of its health emergency preparedness. We developed a framework to analyze the expected effectiveness and utility of these tools. Through mixed search strategies, we identified 12 tools with relevance to public health emergencies. There was considerable consensus concerning the critical preparedness system elements to be assessed, although their relative emphasis and means of assessment and measurement varied considerably. Several tools identified appeared to have reporting requirements as their primary aim, rather than primary utility for system self-assessment of the countries and states using the tool. Few tools attempted to give an account of their underlying evidence base. Only some tools were available in a user-friendly electronic modality or included quantitative measures to support the monitoring of system preparedness over time. We conclude there is still a need for improvement in tools available for assessment of country preparedness for public health emergencies, and for applied research to increase identification of system measures that are valid indicators of system response capability.


2000 ◽  
Vol 72 (6) ◽  
pp. 1067-1205 ◽  
Author(s):  
Ivan Bruunshuus ◽  
L. K. Poulsen ◽  
H. Olesen

The subject field of clinical allergology deals with many hundred different allergens from all parts of the human environment and the number steadily increases. Not all of the allergens are strictly defined in chemical terms and procedures for detection of antibodies against the allergens in the human vary. This document deals with the presentation of request and report on such properties according to some international rules and the allocation of code values representing the concept delineated. The coding scheme thus prepared is imperfect and needs further elaboration as allergens become more well defined. It is a step toward harmonization, in particular as concerns the coding system applied. The net outcome is a coding scheme for use in electronic transmission. PrefaceThe present document is part sixteen (XVI) of a series on properties and units in the clinical laboratory sciences initiated in 1987. > View series titles (view corresponding project) The NCCLS code values are reproduced with permission from NCCLS publication I/LA20-P.Foreword and ScopeBasic research in biology and medicine and innovations in laboratory methodology have greatly increased the range of properties available to medical practitioners to help them in decisions on diagnosis, treatment and prevention of disease. The plethora is now such that the individual doctor has insight in or understanding of only a limited number of properties offered to him or her from the various clinical laboratory specialities. In the laboratory, local terms (jargon) may be well understood among colleagues, but they are not appropriate for communication with the outside world. Likewise, a laboratory and its local community of users, such as hospital or community physicians, may use a "local dialect" of the language of clinical laboratory sciences which is well understood by all concerned, but when the communication possibilities are wider, even transnational, risks of serious misunderstanding arise. In addition, the terminology used by one laboratory speciality may vary even within the speciality, and may be incomprehensible to another speciality. This inconsistency is a minor inconvenience to the laboratory specialities, each one essentially operating within its own area of activity. However, for the user this inconsistency is highly unsatisfactory and may hinder treatment of the patient. It is therefore essential to promote clear, unambiguous, meaningful and fully informative communication. Also coherence of statements made within and between medical specialities, and uniformity in structure of presentation is to be strived for. This coherence will facilitate transfer of information over cultural, alphabetic and language areas. The purpose of this document is to apply the syntax structures for request and report recommended by the European standards ENV 1614:1995 and ENV 12435:1996 and by IUPAC-IFCC, providing formats and names of properties observed in the domain of clinical allergology, in order to facilitate unequivocal written or electronic communication between health care professionals. The systematic names recommended here are primarily for the purpose of unambiguous data exchange. Their use in routine language by clinicians or laboratory practitioners is optional but encouraged.


2002 ◽  
Vol 23 (2) ◽  
pp. 304-306
Author(s):  
Diane E. Beals

Since the late 1980s, the Child Language Data Exchange System (CHILDES) has defined the state of the art of collection, analysis, archiving, and data sharing of transcriptions of children's language. Starting from scratch in 1987, Brian MacWhinney, along with many other leaders in child language, developed highly useful tools for the computerization of transcripts and their analysis. I have used the transcription conventions and analysis programs since 1989 and have seen the system evolve from a simple DOS-based program to one that handles much broader and more complex analyses within more user-friendly Windows and Macintosh platforms. This latest (third) edition of the manual that accompanies the CHILDES system reflects a more stable version of the Conventions for Human Analysis of Transcripts (CHAT) and Child Language Analysis (CLAN) programs than prior editions, which felt like works in progress. This version is written as a finished product with procedures and programs that have settled down into stable patterns of operation.


2019 ◽  
Author(s):  
Birgit Möller ◽  
Hongmei Chen ◽  
Tino Schmidt ◽  
Axel Zieschank ◽  
Roman Patzak ◽  
...  

AbstractBackground and aimsMinirhizotrons are commonly used to study root turnover which is essential for understanding ecosystem carbon and nutrient cycling. Yet, extracting data from minirhizotron images requires intensive annotation effort. Existing annotation tools often lack flexibility and provide only a subset of the required functionality. To facilitate efficient root annotation in minirhizotrons, we present the user-friendly open source tool rhizoTrak.Methods and resultsrhizoTrak builds on TrakEM2 and is publically available as Fiji plugin. It uses treelines to represent branching structures in roots and assigns customizable status labels per root segment. rhizoTrak offers configuration options for visualization and various functions for root annotation mostly accessible via keyboard shortcuts. rhizoTrak allows time-series data import and particularly supports easy handling and annotation of time series images. This is facilitated via explicit temporal links (connectors) between roots which are automatically generated when copying annotations from one image to the next. rhizoTrak includes automatic consistency checks and guided procedures for resolving conflicts. It facilitates easy data exchange with other software by supporting open data formats.ConclusionsrhizoTrak covers the full range of functions required for user-friendly and efficient annotation of time-series images. Its flexibility and open source nature will foster efficient data acquisition procedures in root studies using minirhizotrons.


1998 ◽  
Vol 37 (04/05) ◽  
pp. 551-563 ◽  
Author(s):  
F. Consorti ◽  
E. Galeazzi ◽  
A. Rossi Mori

AbstractThe Technical Committee on “Medical Informatics” of the European Committee for Standardization (CEN{TC251) is supporting developers ofterminological systems in healthcare by a series of standards. The dream of “universal” coding system was abandoned in favor of a coherent family of terminologies, diversified according to tasks; two ideas were introduced: (1) the “categorical structure”, i.e. a model of semantic categories and their relations within a subject field and (2) the “cross-thesaurus”, i.e. a system of descriptors to build a systematic representation (called here “dissection") for each terminological phrase, coherent across diverse terminologies on a given subject field.The goal is to assure coexistence and interoperability (and reciprocal support for development and maintenance) to three generations of systems: (1) traditional paper-based systems (first generation); (2) compositional systems built according to a categorical structure and a cross-thesaurus (second generation) and (3) formal models (third generation).Various scenarios are presented, on the exploitation of computer-based terminological systems. The idea of “operational meaning” of terminological phrases within administrative and organizational contexts and the idea of “task-oriented details” are also introduced, to justify and exploit design constraints on terminological systems.


2014 ◽  
Vol 513-517 ◽  
pp. 1899-1902
Author(s):  
Cheng Peng ◽  
Hua Rui Wu ◽  
Xiao Xia Shi ◽  
Xiang Yang Qin

In China, there is a large amount of data about agricultural products price released by thousands of agricultural websites on the Internet. These records are basically displayed in the form of text, table, and statistics chart but location information cannot be displayed graphically. Rich client and WebGIS techniques can improve representation of agricultural products price and help to provide effective technological solutions for increasing data. First, we describe the methods of standardizing agricultural products price data, which is crawled from agricultural websites through vertical search engine. Forward maximum matching algorithm is then explained and applied for spatializing data. After that, technologies of WebGIS based on rich client (JavaScript/Ajax and Flex) are summarized and analyzed and the map visualization methods of agricultural products price are presented, taking Baidu Map API and ArcGIS API for Flex for example. The methods can provide visual, interactive, user-friendly representation of agricultural products price data in geography information system as well as share visualization services through Internet or Intranet to improve data exchange and utilization. Compared to traditional WebGIS, WebGIS based on RIA improves user satisfaction and increases response speed. The results demonstrate that WebGIS by using RIA technology is a feasible solution method for map visualization of agricultural products price.


2011 ◽  
Vol 50 (02) ◽  
pp. 105-114 ◽  
Author(s):  
M. C. Lin ◽  
D. J. Vreeman ◽  
C. J. McDonald ◽  
S. M. Huff

Summary Objectives: We characterized the use of laboratory LOINC® codes in three large institutions, focused on the following questions: 1) How many local codes had been voluntarily mapped to LOINC codes by each institution? 2) Could additional mappings be found by expert manual review for any local codes that were not initially mapped to LOINC codes by the local institution? and 3) Are there any common characteristics of unmapped local codes that might explain why some local codes were not mapped to LOINC codes by the local institution? Methods: With Institutional Review Board (IRB) approval, we obtained deidentified data from three large institutions. We calculated the percentage of local codes that have been mapped to LOINC by personnel at each of the institutions. We also analyzed a sample of un-mapped local codes to determine whether any additional LOINC mappings could be made and identify common characteristics that might explain why some local codes did not have mappings. Results: Concept type coverage and concept token coverage (volume of instance data covered) of local codes mapped to LOINC codes were 0.44/0.59, 0.78/0.78 and 0.79/ -0.88 for ARUP, Intermountain, and Regenstrief, respectively. After additional expert manual mapping, the results showed mapping rates of 0.63/0.72, 0.83/0.80 and 0.88/0.90, respectively. After excluding local codes which were not useful for inter-institutional data exchange, the mapping rates became 0.73/0.79, 0.90/0.99 and 0.93/0.997, respectively. Conclusions: Local codes for two institutions could be mapped to LOINC codes with 99% or better concept token coverage, but mapping for a third institution (a reference laboratory) only achieved 79% concept token coverage. Our research supports the conclusions of others that not all local codes should be assigned LOINC codes. There should also be public discussions to develop more precise rules for when LOINC codes should be assigned


2009 ◽  
Vol 137 (11-12) ◽  
pp. 664-669 ◽  
Author(s):  
Marko Kolsek

The author describes problems related to the implementation of electronic medical record in family medicine in Slovenia since 1992 when first personal computers have been delivered to family physicians' practices. The situation of health care informatization and implementation of electronic medical record in primary health care in new countries, other former Yugoslav republics, is described. There are rather big differences among countries and even among some regions of one country, but in the last year the situation improved, especially in Montenegro, Serbia and Slovenia. The main problem that is still unsolved is software offered by several companies which do not offer many functions, are non-standardized or user friendly enough and is not adapted to doctors' needs. Some important questions on medical records are discussed, e.g. what is in fact a medical record, what is its purpose, who uses it, which record is a good one, what should contain and confidentiality issue. The author describes what makes electronic medical record better than paper-based one (above all it is of better quality, efficiency and care-safe, easier in data retrieval and does it offer the possibility of data exchange with other health care professionals) and what are the barriers to its wider implementation.


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