Opal-A and associated microbes from Wairakei, New Zealand: the first 300 days

2003 ◽  
Vol 67 (3) ◽  
pp. 563-579 ◽  
Author(s):  
B. Y. Smith ◽  
S. J. Turner ◽  
K. A. Rodgers

AbstractAll samples of silica sinter, <2 y old taken from the discharge drain of the Wairakei geothermal power station and the Rainbow Terrace of Orakei Korako, consist of non-crystalline opal-A. This silica phase deposits directly upon the concrete drain wall and filamentous templets, extending from this wall, afforded by the microbial community present in the drain, whose nature was determined by a culture- independent strategy that entailed construction, fingerprinting and sequencing of a 16S clone library. The bacterial community is dominated by five major groups of organisms, present in approximately equal proportions, and which account for ∼50% of the community. None of the 16S sequences from these dominant groups yielded a perfect match with 16S sequences for named organisms in the international databases. However one dominant group clusters withHydrogenophilus thermoluteus,a thermophilic filamentous bacterium, and two cluster with putatively thermophilic members of theCyanobacteriaand green non-sulphur bacteria respectively. Initial opal-A deposits rapidly as agglomerations of silica nanospheres that, in turn, form chains of coalesced, oblate, microspheres <0.4 x 0.2 mm about the barbicel-like filaments, to produce a mat of fine woven strands. The majority of individual filaments are <8 μm long and 0.8 mm wide but may be up to 55 mm long by 1 mm wide. Where laminar flow dominates, most strands develop parallel to the drain current but some strands crisscross while others protrude above the mat surface. Where flow is turbulent, strands lack preferred orientation and some adopt a helical form. In general, following deposition, the values of the scattering broadband at half (FWHM) and three quarters (FWTM) of the maximum intensity decrease with increasing sample age. The behaviour of the band at one quarter maximum intensity (FWQM) is less consistent, but, in general, the youngest sinters possess the highest FWQM, FWHM and FWTM values that prove independent of fabric type. Opal-A silica matures following its removal from the parent fluid, especially where the sinter surface is filmed by water. A continual movement of silica is shown by a second generation of microspheres formed on the silica mat surface, by an increase in size of the initial microspheres, and by an increase in maximum intensity of the X-ray scattering broadbands. Similar silica aging behaviour occurs among young sinters developed upon microbial mats at Orakei Korako. The deposition and aging processes accord with the known behaviour of juvenile opaline silica in both natural and artificial systems whose pH, temperature and dissolved salt content are similar to Wairakei and Rainbow terrace: gelling of silica is favoured by the high pH (∼8.3) and temperature (∼60°C) of the Wairakei discharge fluid but the high dissolved salt content of the water (Na+= 930 μg/g, Ca2+= 12 μg/g, Cl = 1500 μg/g) and abundant microbial community facilitate rapid and copious flocculation of solid silica within the drain, in contrast to the slower accumulation on the natural sinter terrace at lower temperature (30—45°C) from less saline dilute bicarbonate-chloride waters (Na+= 180 μg/g, Ca2+= 0.2 μg/g, Cl = 400 μg/g, pH = 8.1).

Agronomy ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 928
Author(s):  
Vladimir Mironov ◽  
Anna Vanteeva ◽  
Alexander Merkel

This study aims to establish the relationship between ambient parameters and the diversity, composition, and function of microbial communities that predominate at each stage of the co-composting of food and agricultural waste. Culture-based and culture-independent methods were used to investigate the changes in the microbiota. The favorable conditions of high initial humidity and C/N ratio caused a decrease in the richness and biodiversity of the microbiota when such conditions existed. During the thermophilic stage, the total microbial number increased, and active mineralization of organic matter was carried out by members of the genera Bacillus, Caldibacillus, Aspergillus, and Penicillium. The fungal community was sensitive to drastic temperature changes. Byssochlamys dominated among fungi during the transition from the mesophilic to the thermophilic stage and during cooling. The biodiversity increased with time and was associated with the dynamics of germination and nitrification indices, so that the more diverse the microbial community, the higher the properties of compost that stimulate plant growth and development. The microbial community of the mature compost, together with mineral plant nutrients ready for consumption and humic compounds, make this compost a good soil additive.


2018 ◽  
Vol 85 (1) ◽  
Author(s):  
J. De Roos ◽  
D. Van der Veken ◽  
L. De Vuyst

ABSTRACTTraditional lambic beer production takes place through wort inoculation with environmental air and fermentation and maturation in wooden barrels. These wooden casks or foeders are possible additional inoculation sources of microorganisms for lambic worts. To date, however, these lambic barrels have been examined only with culture-dependent techniques, thereby missing a portion of the microorganisms present. Moreover, the effects of the cleaning procedures (involving high-pressure water and/or fumigation) and the barrel type on the microbial community structures of the interior surfaces of wooden lambic barrels were unclear. The culture-dependent plating and culture-independent amplicon sequencing of swab samples obtained from the interior surfaces of different wooden casks and foeders used for traditional lambic beer production in Belgium revealed that the microbial compositions of these surfaces differed statistically throughout the barrel-cleaning procedures applied. At the end of the cleaning procedures, amplicon sequencing still detected fermentation- and maturation-related microorganisms, although only a few colonies were still detectable using culture-dependent methods. It is possible that some of the surviving microorganisms were missed due to the presence of many of these cells in a viable but not culturable state and/or engrained deeper in the wood. These surviving microorganisms could act as an additional inoculation source, besides brewery air and brewery equipment, thereby helping to establish a stable microbial community in the wort to diminish batch-to-batch variations in fermentation profiles. Furthermore, the microbial compositions of the interior barrel surfaces differed statistically based on the barrel type, possibly reflecting different characteristics of the lambic barrels in terms of age, wood thickness, and wood porosity.IMPORTANCEAlthough the coolship step is generally regarded as the main contributor to the spontaneous inoculation by environmental air of fresh worts for lambic beer production, it is known that microorganisms often associate with specific surfaces present in a brewery. However, knowledge about the association of microorganisms with the interior surfaces of wooden lambic barrels is limited. To clarify the role of casks and foeders as additional microbial inoculation sources, it was important to determine the influence of the barrel characteristics and the cleaning procedures on the microbial communities of the interior barrel surfaces. Moreover, this helped to elucidate the complex spontaneous lambic beer fermentation and maturation process. It will allow further optimization of the lambic beer production process, as well as the wooden-barrel-cleaning procedures applied.


2021 ◽  
Author(s):  
Júlia Ronzella Ottoni ◽  
Suzan Prado Fernandes Bernal ◽  
Tiago Joelzer Marteres ◽  
Franciele Natividade Luiz ◽  
Viviane Piccin dos Santos ◽  
...  

Abstract The search for sustainable development has led countries around the world to seek the improvement of technologies that use renewable energy sources. One of the alternatives in the production of renewable energy comes from the use of waste including urban solids, animal excrement from livestock and biomass residues from agro-industrial plants. These materials may be used in the production of biogas, making its production highly sustainable and environmentally friendly, in addition to reducing public expenses for the treatment of those wastes. The present study evaluated the cultivated and uncultivated microbial community from a substrate (starter) used as an adapter for biogas production in anaerobic digestion processes. 16S rDNA metabarcoding revealed domain of bacteria belonging to the phyla Firmicutes, Bacteroidota, Chloroflexi and Synergistota. The methanogenic group was represented by the phyla Halobacterota and Euryarchaeota. Through 16S rRNA sequencing analysis of isolates recovered from the starter culture, the genera Rhodococcus, Vagococcus, Lysinibacillus, Niallia, Priestia, Robertmurraya, Luteimonas and Proteiniclasticum were recovered, groups that were not observed in the metabarcoding data. The groups mentioned are involved in the metabolism pathways of sugars and other compounds derived from lignocellulosic material, as well as in anaerobic methane production processes. The results demonstrate that culture-dependent approaches, such as isolation and sequencing of isolates, as well as culture-independent studies, such as the Metabarcoding approach, are complementary methodologies that, when integrated, provide robust and comprehensive information about the microbial communities involved in various processes, including the production of biogas in anaerobic digestion processes.


2020 ◽  
Vol 8 (7) ◽  
pp. 982
Author(s):  
Lucas von Gastrow ◽  
Marie-Noëlle Madec ◽  
Victoria Chuat ◽  
Stanislas Lubac ◽  
Clémence Morinière ◽  
...  

Gwell is a traditional mesophilic fermented milk from the Brittany region of France. The fermentation process is based on a back-slopping method. The starter is made from a portion of the previous Gwell production, so that Gwell is both the starter and final product for consumption. In a participatory research framework involving 13 producers, Gwell was characterized from both the sensory and microbial points of view and was defined by its tangy taste and smooth and dense texture. The microbial community of typical Gwell samples was studied using both culture-dependent and culture-independent approaches. Lactococcus lactis was systematically identified in Gwell, being represented by both subspecies cremoris and lactis biovar diacetylactis which were always associated. Geotrichum candidum was also found in all the samples. The microbial composition was confirmed by 16S and ITS2 metabarcoding analysis. We were able to reconstruct the history of Gwell exchanges between producers, and thus obtained the genealogy of the samples we analyzed. The samples clustered in two groups which were also differentiated by their microbial composition, and notably by the presence or absence of yeasts identified as Kazachstania servazii and Streptococcus species.


2020 ◽  
Vol 8 (6) ◽  
pp. 808 ◽  
Author(s):  
André C. Pereira ◽  
Victor Bandeira ◽  
Carlos Fonseca ◽  
Mónica V. Cunha

Recently, we unveiled taxonomical and functional differences in Egyptian mongoose (Herpestes ichneumon) gut microbiota across sex and age classes by microbial profiling. In this study, we generate, through culturomics, extended baseline information on the culturable bacterial and fungal microbiome of the species using the same specimens as models. Firstly, this strategy enabled us to explore cultivable microbial community differences across sexes and to ascertain the influence exerted by biological and environmental contexts of each host in its microbiota signature. Secondly, it permitted us to compare the culturomics and microbial profiling approaches and their ability to provide information on mongoose gut microbiota. In agreement with microbial profiling, culturomics showed that the core gut cultivable microbiota of the mongoose is dominated by Firmicutes and, as previously found, is able to distinguish sex- and age class-specific genera. Additional information could be obtained by culturomics, with six new genera unveiled. Richness indices and the Shannon index were concordant between culture-dependent and culture-independent approaches, highlighting significantly higher values when using microbial profiling. However, the Simpson index underlined higher values for the culturomics-generated data. These contrasting results were due to a differential influence of dominant and rare taxa on those indices. Beta diversity analyses of culturable microbiota showed similarities between adults and juveniles, but not in the data series originated from microbial profiling. Additionally, whereas the microbial profiling indicated that there were several bioenvironmental features related to the bacterial gut microbiota of the Egyptian mongoose, a clear association between microbiota and bioenvironmental features could not be established through culturomics. The discrepancies found between the data generated by the two methodologies and the underlying inferences, both in terms of β-diversity and role of bioenvironmental features, confirm that culture-independent, sequence-based methods have a higher ability to assess, at a fine scale, the influence of abiotic and biotic factors on the microbial community composition of mongoose’ gut. However, when used in a complementary perspective, this knowledge can be expanded by culturomics.


2013 ◽  
Vol 726-731 ◽  
pp. 463-469
Author(s):  
Guang Ming Zhao ◽  
Si Yuan Ye ◽  
Yuan Zheng Xin ◽  
Xi Gui Ding ◽  
Hong Ming Yuan ◽  
...  

Yellow River Delta has a special status of coastal wetland research in China. The microbial community characteristics such as community structure, activity and size in the wetland were investigated in the modern Yellow River Delta of Shandong Province. The aim was to find the effect of salinity on the microbial community. There was a significant negative linear relationship between soluble salt content and the total number of microbes, overall microbial activity, and diversity of culturally viable microbes. Differences of the soil bacterial community in different depths were monitored using the terminal restriction fragment length polymorphism (T-RFLP) and clone library analyses. In a word, these results indicate that higher salinity and deeper depth resulted in a smaller, more stressed microbial community which was less active and diverse .


1981 ◽  
Vol 18 (8) ◽  
pp. 1303-1309 ◽  
Author(s):  
L. P. Pluysnina ◽  
I. P. Ivanov

The stability fields of laumontite, prehnite, pumpellyite, zoisite, and tremolite-bearing assemblages were experimentally examined in the CaO–MgO–Al2O3–SiO2–H2O–CO2 system. The influence of the Fe content on the shift of the upper stability boundary towards both lower temperature and [Formula: see text] equilibrium values is shown for pumpellyite. The runs for some dehydration–carbonatization reactions in the complex H2O–CO2–NaCl fluid have revealed a decrease in the [Formula: see text] equilibrium values for even low salt content. The zeolite, prehnite–pumpellyite, and greenschist facies limits are plotted in the schematic [Formula: see text] diagram, and their possible Pfl limits are discussed. For examined P–T conditions of greenschist to amphibolite facies transition the absence of the compositional gap between tremolite and Ca-hornblende is found.


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