scholarly journals Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation

2021 ◽  
Vol 16 (1) ◽  
Author(s):  
Kaicheng Pan ◽  
Lei Zhao ◽  
Song Gu ◽  
Yi Tang ◽  
Jiahao Wang ◽  
...  
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Positive Impact ◽  
Three Dimensional ◽  
Whole Brain Radiotherapy ◽  
Work Load ◽  
Dice Similarity Coefficient ◽  
Target Area ◽  
Slice Thickness ◽  
Significant Difference

Abstract Background Whole brain radiotherapy (WBRT) can impair patients’ cognitive function. Hippocampal avoidance during WBRT can potentially prevent this side effect. However, manually delineating the target area is time-consuming and difficult. Here, we proposed a credible approach of automatic hippocampal delineation based on convolutional neural networks. Methods Referring to the hippocampus contouring atlas proposed by RTOG 0933, we manually delineated (MD) the hippocampus on the MRI data sets (3-dimensional T1-weighted with slice thickness of 1 mm, n = 175), which were used to construct a three-dimensional convolutional neural network aiming for the hippocampus automatic delineation (AD). The performance of this AD tool was tested on three cohorts: (a) 3D T1 MRI with 1-mm slice thickness (n = 30); (b) non-3D T1-weighted MRI with 3-mm slice thickness (n = 19); (c) non-3D T1-weighted MRI with 1-mm slice thickness (n = 11). All MRIs confirmed with normal hippocampus has not been violated by any disease. Virtual radiation plans were created for AD and MD hippocampi in cohort c to evaluate the clinical feasibility of the artificial intelligence approach. Statistical analyses were performed using SPSS version 23. P < 0.05 was considered significant. Results The Dice similarity coefficient (DSC) and Average Hausdorff Distance (AVD) between the AD and MD hippocampi are 0.86 ± 0.028 and 0.18 ± 0.050 cm in cohort a, 0.76 ± 0.035 and 0.31 ± 0.064 cm in cohort b, 0.80 ± 0.015 and 0.24 ± 0.021 cm in cohort c, respectively. The DSC and AVD in cohort a were better than those in cohorts b and c (P < 0.01). There is no significant difference between the radiotherapy plans generated using the AD and MD hippocampi. Conclusion The AD of the hippocampus based on a deep learning algorithm showed satisfying results, which could have a positive impact on improving delineation accuracy and reducing work load.

scholarly journals Automated Segmentation of Infarct Lesions in T1-Weighted MRI Scans Using Variational Mode Decomposition and Deep Learning

Sensors ◽  
2021 ◽  
Vol 21 (6) ◽  
pp. 1952
Author(s):  
May Phu Paing ◽  
Supan Tungjitkusolmun ◽  
Toan Huy Bui ◽  
Sarinporn Visitsattapongse ◽  
Chuchart Pintavirooj
Keyword(s):  
Deep Learning ◽  
Brain Infarction ◽  
Three Dimensional ◽  
Dice Similarity Coefficient ◽  
Automated Segmentation ◽  
Variational Mode Decomposition ◽  
Brain Scans ◽  
Automated Method ◽  
Mode Decomposition ◽  
Segmentation Task

Automated segmentation methods are critical for early detection, prompt actions, and immediate treatments in reducing disability and death risks of brain infarction. This paper aims to develop a fully automated method to segment the infarct lesions from T1-weighted brain scans. As a key novelty, the proposed method combines variational mode decomposition and deep learning-based segmentation to take advantages of both methods and provide better results. There are three main technical contributions in this paper. First, variational mode decomposition is applied as a pre-processing to discriminate the infarct lesions from unwanted non-infarct tissues. Second, overlapped patches strategy is proposed to reduce the workload of the deep-learning-based segmentation task. Finally, a three-dimensional U-Net model is developed to perform patch-wise segmentation of infarct lesions. A total of 239 brain scans from a public dataset is utilized to develop and evaluate the proposed method. Empirical results reveal that the proposed automated segmentation can provide promising performances with an average dice similarity coefficient (DSC) of 0.6684, intersection over union (IoU) of 0.5022, and average symmetric surface distance (ASSD) of 0.3932, respectively.

scholarly journals Segmentation of Affected Crops using Deep Learning

2019 ◽  
Vol 8 (5S3) ◽  
pp. 232-234
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Monitoring System ◽  
Learning Algorithm ◽  
Target Area ◽  
Learning Technology ◽  
Machine Learning Algorithm ◽  
Normal Human ◽  
Human Monitoring ◽  
Disease Attack

Deep Learning technology can accurately predict the presence of diseases and pests in the agricultural farms. Upon this Machine learning algorithm, we can even predict accurately the chance of any disease and pest attacks in future For spraying the correct amount of fertilizer/pesticide to elimate host, the normal human monitoring system unable to predict accurately the total amount and ardent of pest and disease attack in farm. At the specified target area the artificial percepton tells the value accurately and give corrective measure and amount of fertilizers/ pesticides to be sprayed.

scholarly journals A computationally efficient approach to segmentation of the aorta and coronary arteries using deep learning

2021 ◽  
Author(s):  
Wing Keung Cheung ◽  
Robert Bell ◽  
Arjun Nair ◽  
Leon Menezies ◽  
Riyaz Patel ◽  
...  
Keyword(s):  
Deep Learning ◽  
Coronary Arteries ◽  
Automatic Segmentation ◽  
Three Dimensional ◽  
Regions Of Interest ◽  
Dice Similarity Coefficient ◽  
Processing Unit ◽  
Two Dimensional ◽  
Computed Tomography Images ◽  
Graphical Processing

AbstractA fully automatic two-dimensional Unet model is proposed to segment aorta and coronary arteries in computed tomography images. Two models are trained to segment two regions of interest, (1) the aorta and the coronary arteries or (2) the coronary arteries alone. Our method achieves 91.20% and 88.80% dice similarity coefficient accuracy on regions of interest 1 and 2 respectively. Compared with a semi-automatic segmentation method, our model performs better when segmenting the coronary arteries alone. The performance of the proposed method is comparable to existing published two-dimensional or three-dimensional deep learning models. Furthermore, the algorithmic and graphical processing unit memory efficiencies are maintained such that the model can be deployed within hospital computer networks where graphical processing units are typically not available.

scholarly journals Deep learning segmentation of gadolinium-enhancing lesions in multiple sclerosis

2020 ◽  
pp. 135245852092136 ◽  
Author(s):  
Ivan Coronado ◽  
Refaat E Gabr ◽  
Ponnada A Narayana
Keyword(s):  
Multiple Sclerosis ◽  
Deep Learning ◽  
Network Performance ◽  
Three Dimensional ◽  
Proton Density ◽  
Dice Similarity Coefficient ◽  
Lesion Volume ◽  
Imaging Data ◽  
Post Contrast ◽  
Fluid Attenuated Inversion Recovery

Objective: The aim of this study is to assess the performance of deep learning convolutional neural networks (CNNs) in segmenting gadolinium-enhancing lesions using a large cohort of multiple sclerosis (MS) patients. Methods: A three-dimensional (3D) CNN model was trained for segmentation of gadolinium-enhancing lesions using multispectral magnetic resonance imaging data (MRI) from 1006 relapsing–remitting MS patients. The network performance was evaluated for three combinations of multispectral MRI used as input: (U5) fluid-attenuated inversion recovery (FLAIR), T2-weighted, proton density-weighted, and pre- and post-contrast T1-weighted images; (U2) pre- and post-contrast T1-weighted images; and (U1) only post-contrast T1-weighted images. Segmentation performance was evaluated using the Dice similarity coefficient (DSC) and lesion-wise true-positive (TPR) and false-positive (FPR) rates. Performance was also evaluated as a function of enhancing lesion volume. Results: The DSC/TPR/FPR values averaged over all the enhancing lesion sizes were 0.77/0.90/0.23 using the U5 model. These values for the largest enhancement volumes (>500 mm3) were 0.81/0.97/0.04. For U2, the average DSC/TPR/FPR values were 0.72/0.86/0.31. Comparable performance was observed with U1. For all types of input, the network performance degraded with decreased enhancement size. Conclusion: Excellent segmentation of enhancing lesions was observed for enhancement volume ⩾70 mm3. The best performance was achieved when the input included all five multispectral image sets.

scholarly journals Detection and Identification of Organic Pollutants in Drinking Water from Fluorescence Spectra Based on Deep Learning Using Convolutional Autoencoder

Water ◽  
2021 ◽  
Vol 13 (19) ◽  
pp. 2633
Author(s):  
Jie Yu ◽  
Yitong Cao ◽  
Fei Shi ◽  
Jiegen Shi ◽  
Dibo Hou ◽  
...  
Keyword(s):  
Drinking Water ◽  
Deep Learning ◽  
Fluorescence Spectroscopy ◽  
Organic Pollutants ◽  
Learning Algorithm ◽  
Three Dimensional ◽  
Gradient Boosting ◽  
Spectral Processing ◽  
Extreme Gradient Boosting ◽  
Convolutional Autoencoder

Three dimensional fluorescence spectroscopy has become increasingly useful in the detection of organic pollutants. However, this approach is limited by decreased accuracy in identifying low concentration pollutants. In this research, a new identification method for organic pollutants in drinking water is accordingly proposed using three-dimensional fluorescence spectroscopy data and a deep learning algorithm. A novel application of a convolutional autoencoder was designed to process high-dimensional fluorescence data and extract multi-scale features from the spectrum of drinking water samples containing organic pollutants. Extreme Gradient Boosting (XGBoost), an implementation of gradient-boosted decision trees, was used to identify the organic pollutants based on the obtained features. Method identification performance was validated on three typical organic pollutants in different concentrations for the scenario of accidental pollution. Results showed that the proposed method achieved increasing accuracy, in the case of both high-(>10 μg/L) and low-(≤10 μg/L) concentration pollutant samples. Compared to traditional spectrum processing techniques, the convolutional autoencoder-based approach enabled obtaining features of enhanced detail from fluorescence spectral data. Moreover, evidence indicated that the proposed method maintained the detection ability in conditions whereby the background water changes. It can effectively reduce the rate of misjudgments associated with the fluctuation of drinking water quality. This study demonstrates the possibility of using deep learning algorithms for spectral processing and contamination detection in drinking water.

scholarly journals Deep Learning Algorithm for Reducing CT Slice Thickness: Effect on Reproducibility of Radiomic Features in Lung Cancer

2019 ◽  
Vol 20 (10) ◽  
pp. 1431 ◽  
Author(s):  
Sohee Park ◽  
Sang Min Lee ◽  
Kyung-Hyun Do ◽  
June-Goo Lee ◽  
Woong Bae ◽  
...  
Keyword(s):  
Lung Cancer ◽  
Deep Learning ◽  
Learning Algorithm ◽  
Thickness Effect ◽  
Slice Thickness ◽  
Deep Learning Algorithm

Evaluation on Auto-segmentation of the Clinical Target Volume (CTV) for Graves' Ophthalmopathy (GO) with a Fully Convolutional Network (FCN) on CT Images

2020 ◽  
Vol 16 ◽  
Author(s):  
Jialiang Jiang ◽  
Yong Luo ◽  
Feng Wang ◽  
Yuchuan Fu ◽  
Hang Yu ◽  
...  
Keyword(s):  
Network Architecture ◽  
Treatment Plan ◽  
Automatic Segmentation ◽  
Evaluation Criteria ◽  
Target Volume ◽  
Ct Images ◽  
Dice Similarity Coefficient ◽  
Target Area ◽  
Convolutional Network ◽  
Significant Difference

: Purpose: To evaluate the accuracy and dosimetric effects for auto-segmentation of the CTV for GO in CT images based on FCN. Methods: An FCN-8s network architecture for auto-segmentation was built based on Caffe. CT images of 121 patients with GO who have received radiotherapy at the West China Hospital of Sichuan University were randomly selected for training and testing. Two methods were used to segment the CTV of GO: treating the two-part CTV as a whole anatomical region or considering the two parts of CTV as two independent regions. Dice Similarity Coefficient (DSC) and Hausdorff Distance (HD) were used as evaluation criteria. The auto-segmented contours were imported into the original treatment plan to analysis the dosimetric characteristics. Results: The similarity comparison between manual contours and auto-segmental contours showed an average DSC value up to 0.83. The max HD values for segmenting two parts of CTV separately was a little bit smaller than treating CTV with one label (8.23±2.80 vs. 9.03±2.78). The dosimetric comparison between manual contours and auto-segmental contours showed there was a significant difference (p<0.05) with the lack of dose for auto-segmental CTV. Conclusion: Based on deep learning architecture, the automatic segmentation model for small target area can carry out auto contouring task well. Treating separate parts of one target as different anatomic regions can help to improve the auto-contouring quality. The dosimetric evaluation can provide us with different perspectives for further exploration of automatic sketching tools.

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