scholarly journals Dipteran diversity and succession pattern on carcass of rabbits treated with opium dross: Implication in forensic medicine

2020 ◽  
Vol 21 (7) ◽  
Author(s):  
Davood Keshavarz ◽  
Yavar Rassi ◽  
Mohamadali Oshaghi ◽  
KOUROSH AZIZI ◽  
SAYENA RAFIZADEH ◽  
...  
Keyword(s):  
Forensic Medicine ◽  
Larval Growth ◽  
Shannon Index ◽  
Larval Growth Rate ◽  
Significant Difference ◽  
Sampling Intervals ◽  
High Species Richness ◽  
Dipteran Species ◽  
Permutation Analysis ◽  
Pmi Estimation

Abstract. Keshavarz D, Rassi Y, Oshaghi MA, Azizi K, Rafizadeh S, Shahriarinamadi M. 2020. Dipteran diversity and succession pattern on carcass of rabbits treated with opium: Implication in forensic medicine. Biodiversitas 21: 3135-3141. The present study aimed to investigate the effect of opium on the succession pattern and diversity of Diptera on rabbit carcasses. In the present experimental study, dipteran species were collected from rabbit carcasses during the decay process. During this study, two replicates were performed, and four rabbits were used in each. Rabbits divided equally into two groups. In the first group, animals were received 25 mg opium dross orally via a gastric tube and then gradually increased the dose to 100 mg/case/day, while the second group were used as controls and received distilled water. The most frequent species on both carcass types were Chrysomya albiceps (26.2%), Lucilia sericata (15.9%), and Musca domestica (13.9%). Diversity analysis indicates high species richness on untreated carcasses (Shannon: 2.1; Margalef: 1.7). However, a significant difference was not detected for the Shannon index between the treated and untreated carcasses (P: 0.56). The taxa similarity values for sampling intervals ranged from 0.20-0.46 for both untreated and treated carcasses. Permutation analysis showed that successional patterns of dipteran species were similar between opium dross-treated and untreated carcasses. Therefore, in the case of opioid (opium) abused cadaver, this substance could not have an effect on the PMI estimation based on the pattern of succession. But it seems that the PMI should be corrected when the estimate is based on larval growth rate.

scholarly journals Diversity of Public Health and Forensic Important Flies Using Three Measures of Hill Numbers in Iran

2020 ◽  
Vol 13 (1) ◽  
pp. 497-502
Author(s):  
Davoud Keshavarzi ◽  
Yavar Rassi
Keyword(s):  
Public Health ◽  
Diversity Index ◽  
R Package ◽  
Shannon Index ◽  
The Public ◽  
Control Programs ◽  
Significant Difference ◽  
Hill Numbers ◽  
Index Value ◽  
Dipteran Species

Introduction: Dipteran species (flies) are one of the most important insects within the public health and forensic fields. Previous studies have shown that flies play an important role in transmitting the diseases and also estimating the time of death, but their diversity by new methods has been less studied. Methods: Dipteran specimens were collected from rabbit carcasses during spring and summer 2019 and then identified. We used the three measures of Hill numbers (q=0,1,2) to compare the species diversity between the seasons. The analysis was performed with an R package (iNEXT) that provided in 2014. Results: During the present study, 12 dipteran species were collected on rabbit carcasses. L. cuprina and M. stabulans were recorded only from the remains of rabbits in summer. The analysis with iNEXT software showed that species richness (q = 0) in spring is lower than summer and this difference was significant. While, the value of Shannon and Simpson diversity index (q = 1, 2) in summer was lower than in spring. Shannon index value was not significantly different between the seasons, as its confidence intervals almost completely overlapped, but a significant difference in Simpson index was detected between the seasons. Conclusion: We conclude that Ch. albiceps, L. sericata and C.vicina are more frequent flies in the study area and dipteran species are more diverse in spring. The current study provided a database in the field of public health and forensic entomology that could be useful for estimating minimum postmortem intervals and also in vector control programs.

Periphyton diversity in two different Antarctic lakes assessed using metabarcoding

2021 ◽  
pp. 1-9
Author(s):  
Paulo E.A.S. Câmara ◽  
Láuren M.D. De Souza ◽  
Otávio Henrique Bezerra Pinto ◽  
Peter Convey ◽  
Eduardo T. Amorim ◽  
...  
Keyword(s):  
Dna Sequences ◽  
High Throughput Sequencing ◽  
Shannon Index ◽  
South Shetland Islands ◽  
King George Island ◽  
Deception Island ◽  
Maritime Antarctic ◽  
Shetland Islands ◽  
Antarctic Lakes ◽  
Significant Difference

Abstract Antarctic lakes have generally simple periphyton communities when compared with those of lower latitudes. To date, assessment of microbial diversity in Antarctica has relied heavily on traditional direct observation and cultivation methods. In this study, sterilized cotton baits were left submerged for two years in two lakes on King George Island and Deception Island, South Shetland Islands (Maritime Antarctic), followed by assessment of diversity by metabarcoding using high-throughput sequencing. DNA sequences of 44 taxa belonging to four kingdoms and seven phyla were found. Thirty-six taxa were detected in Hennequin Lake on King George Island and 20 taxa were detected in Soto Lake on Deception Island. However, no significant difference in species composition was detected between the two assemblages (Shannon index). Our data suggest that metabarcoding provides a suitable method for the assessment of periphyton biodiversity in oligotrophic Antarctic lakes.

scholarly journals Moderate-Intensity Physical Exercise Affects the Exercise Performance and Gut Microbiota of Mice

2021 ◽  
Vol 11 ◽  
Author(s):  
Wenqian Yang ◽  
Yuqian Liu ◽  
Guang Yang ◽  
Binglin Meng ◽  
Zhicheng Yi ◽  
...  
Keyword(s):  
Gut Microbiota ◽  
Exercise Performance ◽  
Exercise Intervention ◽  
Time Series Data ◽  
Shannon Index ◽  
Series Data ◽  
Moderate Intensity ◽  
Rrna Gene ◽  
Exercise Tests ◽  
Significant Difference

The gut microbiota is closely associated with the health of the host and is affected by many factors, including exercise. In this study, we compared the gut microbial changes and exercise performance over a 14-week period in mice that performed exercise (NE; n = 15) and mice that did not perform exercise (NC; n = 15). Mice were subjected to stool collection and exercise tests one week prior to adaptive training and after 2, 6, 10, and 14 weeks of exercise. Bacteria associated with the stool samples were assessed via Illumina-based 16S rRNA gene sequencing. While there was no significant difference in body weight between the groups (p > 0.05), the NE group had a significantly higher exercise performance from weeks 2–14 (p < 0.01) and lower fat coefficient (p < 0.01) compared with the NC group. The Shannon index of the gut microbiota in the NC group was higher than that in the NE group at weeks 6 and 10, and the Chao1 index was higher than that in the NE group at week 14. Exercise performance positively correlated with the relative abundance of Phascolarctobacterium. Grouped time series data analysis demonstrated that Bifidobacteria, Coprococcus, and one unnamed genus in the Clostridiales order were significantly increased in the NE group, which correlated with increased glucose, flavonoid, arginine, and proline metabolism. In conclusion, moderate-intensity treadmill exercise significantly increased the exercise performance of mice and changed the core bacteria and bacterial metabolic activity. These results provide a reference for studying the effects of exercise intervention and exercise performance on the gut microbiota of mice.

scholarly journals Environmental Temperatures Affect the Gastrointestinal Microbes of the Chinese Giant Salamander

2021 ◽  
Vol 12 ◽  
Author(s):  
Lifeng Zhu ◽  
Wei Zhu ◽  
Tian Zhao ◽  
Hua Chen ◽  
Chunlin Zhao ◽  
...  
Keyword(s):  
Potential Effect ◽  
Shannon Index ◽  
Effect Of Temperature ◽  
Sample Type ◽  
Gastrointestinal Microbiome ◽  
Unifrac Distance ◽  
Alpha And Beta Diversity ◽  
Significant Difference ◽  
Unweighted Unifrac ◽  
Sample Time

An increasing number of studies have shown that warming also influences the animal gut microbiome (altering the community structure and decreasing its diversity), which might further impact host fitness. Here, based on an analysis of the stomach and gut (the entire intestine: from the anterior intestine to the cloaca) microbiome in laboratory larva of giant salamanders (Andrias davidianus) under different living water temperatures (5, 15, and 25°C) at two sample time points (80 and 330 days after the acclimation), we investigated the potential effect of temperature on the gastrointestinal microbiome community. We found the significant Interaction between sampling time and temperature, or type (stomach and gut) on Shannon index in the gastrointestinal microbiome of the giant salamanders. We also found the significant difference in Shannon index among temperature groups within the same sample type (stomach or gut) at each sample time. 10% of variation in microbiome community could be explained by temperature alone in the total samples. Both the stomach and gut microbiomes displayed the highest similarity in the microbiome community (significantly lowest pairwise unweighted Unifrac distance) in the 25-degree group between the two sampling times compared to those in the 5-degree and 15-degree groups. Moreover, the salamanders in the 25°C treatment showed the highest food intake and body mess compared to that of other temperature treatments. A significant increase in the abundance of Firmicutes in the gastrointestinal microbiome on day 330 with increasing temperatures might be caused by increased host metabolism and food consumption. Therefore, we speculate that the high environmental temperature might indirectly affect both alpha and beta diversity of the gastrointestinal microbiome.

scholarly journals Contribution of larval growth rate vairability to the recruitment of the Bay of Málaga anchovy (SW Mediterranean) during 2000-2001 spawning seasons

2003 ◽  
Vol 67 (4) ◽  
pp. 477-490 ◽  
Author(s):  
Alberto García ◽  
Dolores Cortés ◽  
Teodoro Ramírez ◽  
Ana Giráldez ◽  
Ángel Carpena
Keyword(s):  
Growth Rate ◽  
Larval Growth ◽  
Larval Growth Rate

Structural changes in gut microbiome after Ramadan fasting: a pilot study

2020 ◽  
Vol 11 (3) ◽  
pp. 227-233
Author(s):  
C. Ozkul ◽  
M. Yalinay ◽  
T. Karakan
Keyword(s):  
Microbial Community ◽  
Pilot Study ◽  
Structural Changes ◽  
Bacterial Species ◽  
Shannon Index ◽  
Microbial Community Analysis ◽  
Intermittent Fasting ◽  
Microbial Composition ◽  
Ramadan Fasting ◽  
Significant Difference

It has been largely accepted that dietary changes have an effect on gut microbial composition. In this pilot study we hypothesised that Ramadan fasting, which can be considered as a type of time-restricted feeding may lead to changes in gut microbial composition and diversity. A total of 9 adult subjects were included in the study. Stool samples were collected before (baseline) and at the end of the Ramadan fasting (after 29 days). Following the construction of an 16S rRNA amplicon library, the V4 region was sequenced using the Illumina Miseq platform. Microbial community analysis was performed using the QIIME program. A total of 27,521 operational taxonomic units (OTUs) with a 97% similarity were determined in all of the samples. Microbial richness was significantly increased after Ramadan according to observed OTU results (P=0.016). No significant difference was found in terms of Shannon index or phylogenetic diversity metrics of alpha diversity. Microbial community structure was significantly different between baseline and after Ramadan samples according to unweighted UniFrac analysis (P=0.025). LEfSe analysis revealed that Butyricicoccus, Bacteroides, Faecalibacterium, Roseburia, Allobaculum, Eubacterium, Dialister and Erysipelotrichi were significantly enriched genera after the end of Ramadan fasting. According to random forest analysis, the bacterial species most affected by the Ramadan fasting was Butyricicoccus pullicaecorum. Despite this is a pilot study with a limited sample size; our results clearly revealed that Ramadan fasting, which represents an intermittent fasting regime, leads to compositional changes in the gut microbiota.

Snow-induced changes in dwarf birch chemistry increase moth larval growth rate and level of herbivory

Polar Biology ◽  
2009 ◽  
Vol 33 (5) ◽  
pp. 693-702 ◽  
Author(s):  
Mikaela Torp ◽  
Johan Olofsson ◽  
Johanna Witzell ◽  
Robert Baxter
Keyword(s):  
Growth Rate ◽  
Larval Growth ◽  
Larval Growth Rate ◽  
Dwarf Birch ◽  
Induced Changes

scholarly journals Evolution of reduced pre-adult viability and larval growth rate in laboratory populations of Drosophila melanogaster selected for shorter development time

2000 ◽  
Vol 76 (3) ◽  
pp. 249-259 ◽  
Author(s):  
N. G. PRASAD ◽  
MALLIKARJUN SHAKARAD ◽  
VISHAL M. GOHIL ◽  
V. SHEEBA ◽  
M. RAJAMANI ◽  
...  
Keyword(s):  
Growth Rate ◽  
Drosophila Melanogaster ◽  
Development Time ◽  
Larval Growth ◽  
Dry Weight ◽  
Relative Reduction ◽  
Larval Growth Rate ◽  
Laboratory Populations ◽  
The Difference ◽  
Faster Development

Four large (n > 1000) populations of Drosophila melanogaster, derived from control populations maintained on a 3 week discrete generation cycle, were subjected to selection for fast development and early reproduction. Egg to eclosion survivorship and development time and dry weight at eclosion were monitored every 10 generations. Over 70 generations of selection, development time in the selected populations decreased by approximately 36 h relative to controls, a 20% decline. The difference in male and female development time was also reduced in the selected populations. Flies from the selected populations were increasingly lighter at eclosion than controls, with the reduction in dry weight at eclosion over 70 generations of selection being approximately 45% in males and 39% in females. Larval growth rate (dry weight at eclosion/development time) was also reduced in the selected lines over 70 generations, relative to controls, by approximately 32% in males and 24% in females. However, part of this relative reduction was due to an increase in growth rate of the controls populations, presumably an expression of adaptation to conditions in our laboratory. After 50 generations of selection had elapsed, a considerable and increasing pre- adult viability cost to faster development became apparent, with viability in the selected populations being about 22% less than that of controls at generation 70 of selection.

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