scholarly journals Secondary Structure of Bovine Albumin as Studied by Polarization-Sensitive Multiplex CARS Spectroscopy

1996 ◽  
Vol 50 (1) ◽  
pp. 78-85 ◽  
Author(s):  
Artemy Voroshilov ◽  
Cees Otto ◽  
Jan Greve

The first application of polarization-sensitive multiplex coherent anti-Stokes Raman spectroscopy (MCARS) in the absence of resonance enhancement to the resolution of the secondary structure of a protein in solution is reported. Polarization MCARS spectra of bovine albumin in D2O were obtained in the range 1370 to 1730 cm−1 with the aid of the background suppression technique. The spectra were fitted simultaneously with a single set of parameters (band positions, bandwidths, amplitudes, and depolarization ratios). Polarized Raman spectra simulated with these parameters revealed a good correspondence with the spontaneous Raman spectra measured. The broad amide I′ band was decomposed assuming the three major secondary conformations of protein, of which the contribution of β-sheet structure was found to be negligible. Relative weights of α-helix and random coil conformations agree well with the estimates obtained with Raman and circular dichroism (CD) spectroscopies.

2021 ◽  
Vol 3 (3) ◽  
Author(s):  
Yue Ma ◽  
Tiantian Guo ◽  
Yihe Wang ◽  
Xinna Li ◽  
Jingyu Zhang

In order to adapt to the low temperature environment, organisms transmitexcitement to the central system through the thermal sensing system, whichis a classic reflex reaction. The cold receptor GLR-3 perceives cold and produces cold avoidance behavior through peripheral sensory neurons ASER.In order to further understand the gene encoding of the cold sensing glr-3gene and the evolution of its homologous gene group function and proteinfunction, the nucleotide sequence and amino acid sequence of the glr-3gene and its homologous gene in 24 species were obtained and compared.By clustering with the GRIK2 gene sequence of Rana chensinensis, the bioinformatics method was used to predict and sequence analyze the change ofgene, evolution rate, physical and chemical properties of protein, glycosylation sites, phosphorylation sites, secondary structure and tertiary structureof protein. The analysis results show that the glr-3 gene and its homologousgene have obvious positive selection effect. The protein prediction analysisshowed that the glr-3 gene and its homologous genes encoded proteinsin these 25 species were hydrophilic proteins, and the proportion of sidechains of aliphatic amino acids was high. The transmembrane helix waswidespread and there were more N-glycosylation sites and O-glycosylationsites. The protein phosphorylation sites encoded were serine, threonine andtyrosine phosphorylation sites. Secondary structure prediction showed thatthe secondary structure units of the encoded protein were α-helix, β-turn,random coil and extended chain, and the proportion of α-helix was the largest. This study provides useful information on the evolution and function ofthe cold sensing gene glr-3 and its homologous genes.


Author(s):  
Yoshihiro Taniguchi ◽  
Naohiro Takeda

Infrared spectra of five globular proteins (bovine pancreas ribonuclease A, horse skeletal muscle myoglobin, bovine pancreas insulin, horse heart cytochrome c, egg white lysozyme) in 5% D2O solutions (pD 7.0) were measured as a function of pressure up to 1470 MPa at 30 °C. According to the second-derivative spectral changes in the observed amide I band of the proteins, which indicate that the α-helix and β-sheet substructures of the secondary structures break dramatically into the random coil conformation, ribonuclease A and myoglobin are denatured reversibly at 850 MPa and 350 MPa, respectively. Lysozyme denatures partially and reversibly at 670 MPa, as shown by decrease in the α-helix and β-turn substructures, but no change occurs in the random coil and β-sheet substructures. The secondary structure of cytochrome c is not disrupted at pressures up to 1470 MPa, and partial transformation of the α-helix of insulin to random coil starts at 960 MPa. Hydrogen-deuterium exchange of protons on the amide groups in the protein interior is increased by external pressure and is associated with the pressure-induced protein conformational changes. A number of studies on the effects of pressure on protein denaturation have been carried out using various high-pressure detection methods: ultraviolet absorbance spectroscopy (Brandts et al., 1970; Hawley, 1971), visible absorbance spectroscopy (Zipp & Kauzmann, 1973), fluorescence intensity spectroscopy (Li et al., 1976), polarization fluorescence spectroscopy (Chryssomallis et al., 1981), and enzyme activity assays (Taniguchi & Suzuki, 1983; Makimoto et al., 1989). These techniques have the great advantage of being applicable to pressure-induced reversible denaturation of proteins to identify the thermodynamic parameters, especially the volume change and compressibility of a protein in solution, because the experiments can be run under dilute conditions at a protein concentration of less than 0.05% w/v. Therefore, these data reflect the intramolecular phenomena of reversible pressure changes and provide the volume changes accompanying the denaturation of proteins, which are due to the difference in partial molal (specific) volume between the native and denatured proteins in solution.


Molecules ◽  
2018 ◽  
Vol 23 (10) ◽  
pp. 2618 ◽  
Author(s):  
Xiaotong Sun ◽  
Hua Jin ◽  
Yangyang Li ◽  
Haiying Feng ◽  
Chunhong Liu ◽  
...  

This study aimed to investigate the variation of molecular functional properties of peanut protein isolate (PPI) over the storage process and reveal the correlation between the PPI secondary structure and properties in the storage procedure. After storage, the molecular properties of PPI changed significantly (p < 0.05). Extending storage time resulted in a decrease in free sulfhydryl content, fluorescence intensity, surface hydrophobicity and emulsifying properties, which was accompanied by an increase in protein particle size. The results of infrared spectroscopy suggested the content decline of α-helix and β-sheet, and the content rise of β-turn and random coil. Based on bivariate correlation analysis, it was revealed that surface hydrophobicity and emulsifying activity of PPI was significantly affected by α-helix and by β-turn (p < 0.05), respectively. This research supplied more information for the relationship between the peanut protein’s secondary structure and functional properties over the stored process.


2013 ◽  
Vol 781-784 ◽  
pp. 770-773
Author(s):  
Zhao Xi Fang ◽  
Nai Jun Yan ◽  
Guo Qin Liu

Far-UV circular dichroism (CD) spectroscopy was used to study the conformation of wheat gluten protein treatmented by dynamic high pressure microfluidization (DHPM), acid treatment and its comprehensive treatment in two solvents. The results showed, the secondary structure of control sample are mainly consist of α-helix and random-coil in phosphate-buffered saline (PBS) and phosphate buffered solution with SDS(SDS), the secondary structure of control sample are mainly consist of β-Sheet and random-coil. The CD data also showed that SDS interacts with the gluten protein and modifies the protein conformation, which switched the conformation from α-helix and β-Turn to β-sheet and random-coil. However, the CD analysis also indicated that some of the ordered structures of α-helix, β-Turn and β-sheet were destroyed and converted random-coil coped with acid in two solvents, in other words, the acid treatment can directed change the secondary structure. Furthermore, the effect of comprehensive treatment (DHPM plus acid) is not equal to the simple sum of the individual treatment effect.


2013 ◽  
Vol 634-638 ◽  
pp. 1165-1169 ◽  
Author(s):  
Gui Yang Liu ◽  
Si Yong Xiong ◽  
Ren Chuan You ◽  
Ling Shuang Wang ◽  
Ming Zhong Li

Silk fibroin (SF) hydrogels of the wild silkworm species Antheraea pernyi and Antheraea yamamai were obtained from aqueous SF solutions at room temperature. Both A. pernyi and A. yamamai solutions were slow to gelate. Hydrogels of the two species of wild silkworm were obtained rapidly following ultrasonicaton at 400–500 W. The secondary structure of the freeze-dried SF hydrogels was measured by X-ray diffraction and Fourier transform infrared spectroscopy. Ultrasonication did not change the main secondary structure of the hydrogels, but it accelerated the structural transformation of silk fibroin molecules from random coil or α helix to β sheet and reduced the gelation time.


1996 ◽  
Vol 317 (2) ◽  
pp. 549-555 ◽  
Author(s):  
Simon J. BIRVE ◽  
Eva SELSTAM ◽  
Lennart B.-Å. JOHANSSON

To study the secondary structure of the enzyme NADPH: protochlorophyllide oxidoreductase (PCOR), a novel method of enzyme isolation was developed. The detergent isotridecyl poly(ethylene glycol) ether (Genapol X-080) selectively solubilizes the enzyme from a prolamellar-body fraction isolated from wheat (Triticum aestivumL.). The solubilized fraction was further purified by ion-exchange chromatography. The isolated enzyme was studied by fluorescence spectroscopy at 77 K, and by CD spectroscopy. The fluorescence-emission spectra revealed that the binding properties of the substrate and co-substrate were preserved and that photo-reduction occurred. The CD spectra of PCOR were analysed for the relative amounts of the secondary structures, α-helix, β-sheet, turn and random coil. The secondary-structure composition was estimated to be 33% α-helix, 19% β-sheet, 20% turn and 28% random coil. These values are in agreement with those predicted by the Predict Heidelberg Deutschland and self-optimized prediction method from alignments methods. The enzyme has some amino acid identity with other NADPH-binding enzymes containing the Rossmann fold. The Rossmann-fold fingerprint motif is localized in the N-terminal region and at the expected positions in the predicted secondary structure. It is suggested that PCOR is anchored to the interfacial region of the membrane by either a β-sheet or an α-helical region containing tryptophan residues. A hydrophobic loop-region could also be involved in membrane anchoring.


2021 ◽  
Vol 11 (18) ◽  
pp. 8358
Author(s):  
Maria Połomska ◽  
Leszek Kubisz ◽  
Jacek Wolak ◽  
Dorota Hojan-Jezierska

The development of regenerative medicine turns attention toward native collagen as a biocompatible material. Particularly interesting is fish skin collagen, which is relatively easy to extract comparing mammalian tissues and free of some pathogens that are dangerous to humans. The paper presents results of IR Raman spectroscopy studies of silver carp (Hypophthalmichthys molitrix) skin collagen. As collagen properties result from its structure and conformation, both sensitive to temperature, FT NIR Raman spectroscopy is an excellent tool to characterize the molecular structure of fish skin collagen, particularly in temperature range typical for the manufacturing processes of biomedical products. Therefore, the Raman spectra were recorded in a temperature range of 300 to 403 K. The analysis of Raman spectra of prepared collagen films, particularly in the range of the bands related to amide I and amide III entities, showed a high content of α-helix and α-helix type molecular organization in fish skin collagen. Additionally, the secondary structure of the studied fish skin collagen is stable up to ~358 K. Heating to 403 K leads to irreversible changes in the molecular structure of fish skin collagen. It was found that the Raman spectrum of fish skin collagen preheated in this manner becomes similar to the spectrum of the collagen obtained from bovine Achilles tendon, whose secondary structure does not change up to 403 K.


2021 ◽  
Author(s):  
Joanna Depciuch ◽  
Wojciech Czarny ◽  
Wojciech Szuszkiewicz ◽  
Adam Reich ◽  
Bartosz Klebowski ◽  
...  

Abstract Cortisol is a stress hormone plays a crucial role in the balance between phospholipids and lipids level. In consequence, it affects the secondary structure of proteins. Currently cortisol concentration in plasma is determined by biochemical analysis. A new, optical method to estimate stress level is proposed in this work. Infrared and Raman spectroscopies were used to determine quantitative and qualitative changes in the lipids and proteins fraction in function of cortisol concentration in 49 samples of plasma collected from volleyball players at various stages of preparation for the competition. With the cortisol level increase, a decrease of structures related to PO2- phospholipids groups and amides III, II and I bonds was noticed in the transmission spectra. Changes in the secondary structure of protein were indicated as a frequency shift of α-helix and β-sheet vibrations observed in Raman spectra and second derivative of transmission spectra. Pearson correlation test presented positive correlations between phospholipids and proteins level and between cortisol concentration and phospholipids in transmittance spectra. Negative correlations between cortisol concentration and proteins and phospholipids level was observed in the Raman spectra. Both optical techniques are considered to become effective tools for estimating the concentration of cortisol in the plasma.


2016 ◽  
Vol 7 (1) ◽  
pp. 153-163 ◽  
Author(s):  
Li-Yang Lin ◽  
Po-Chiao Huang ◽  
Deng-Jie Yang ◽  
Jhen-Yan Gao ◽  
Jin-Long Hong

AIE-related emission of polypeptide containing an AIE-active terminal is correlated with secondary structures (α-helix, β-sheet and random coil) of the peptide chains.


2016 ◽  
Vol 3 (1) ◽  
Author(s):  
Gombojav O. Ariunbold ◽  
Narangerel Altangerel

AbstractThis paper is a brief overview to coherent anti- Stokes Raman spectroscopic technique and introduces the strengths and barriers to its use all based on the interpretation of simple theoretical formulae. The use of the Gaussian ultrashort pulses is highlighted as a practical elucidatory reconstruction tool of coherent Raman spectra. The paper presents the integral formulae for coherent anti-Stokes and Stokes Raman scattering, and discusses the closed-form solutions, its complex error function, and the delay time formula for enhancement of the inferred pure coherent Raman spectra. As an example, the timeresolved coherent Stokes Raman scattering experimental observations are quantitatively elucidated.Understanding the essentials of coherent Raman spectroscopy, therefore, promotes the importance of a number of experiments including the ones utilizing a broadband excitation with a narrowband delayed probing for successful background suppression.


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