scholarly journals Metabolome Analysis of Arabidopsis thaliana Roots Identifies a Key Metabolic Pathway for Iron Acquisition

PLoS ONE ◽  
2014 ◽  
Vol 9 (7) ◽  
pp. e102444 ◽  
Author(s):  
Holger Schmidt ◽  
Carmen Günther ◽  
Michael Weber ◽  
Cornelia Spörlein ◽  
Sebastian Loscher ◽  
...  
2007 ◽  
Vol 20 (4) ◽  
pp. 441-447 ◽  
Author(s):  
Gérard Vansuyt ◽  
Agnès Robin ◽  
Jean-François Briat ◽  
Catherine Curie ◽  
Philippe Lemanceau

Taking into account the strong iron competition in the rhizosphere and the high affinity of pyoverdines for Fe(III), these molecules are expected to interfere with the iron nutrition of plants, as they do with rhizospheric microbes. The impact of Fe-pyoverdine on iron content of Arabidopsis thaliana was compared with that of Fe-EDTA. Iron chelated to pyoverdine was incorporated in a more efficient way than when chelated to EDTA, leading to increased plant growth of the wild type. A transgenic line of A. thaliana overexpressing ferritin showed a higher iron content than the wild type when supplemented with Fe-EDTA but a lower iron content when supplemented with Fe-pyoverdine despite its increased reductase activity, suggesting that this activity was not involved in the iron uptake from pyoverdine. A mutant knockout iron transporter IRT1 showed lower iron and chlorophyll contents when supplemented with Fe-EDTA than the wild type but not when supplemented with Fe-pyoverdine, indicating that, in contrast to iron from EDTA, iron from pyoverdine was not incorporated through the IRT1 transporter. Altogether these data suggest that iron from Fe-pyoverdine was not incorporated in planta through the strategy I, which is based on reductase activity and IRT1 transporter. This is supported by the presence of pyoverdine in planta as shown by enzyme-linked immunosorbent assay and by tracing 15N of 15N-pyoverdine.


Botany ◽  
2011 ◽  
Vol 89 (10) ◽  
pp. 731-735 ◽  
Author(s):  
Matt Shirley ◽  
Laure Avoscan ◽  
Eric Bernaud ◽  
Gérard Vansuyt ◽  
Philippe Lemanceau

Iron is an essential micronutrient for plants and associated microorganisms. However, the bioavailability of iron in cultivated soils is low. Plants and microorganisms have thus evolved active strategies of iron uptake. Two different iron uptake strategies have been described in dicotyledonous and monocotyledonous graminaceous species. In bacteria, this strategy relies on the synthesis of siderophores. Pyoverdines, a major class of siderophores produced by fluorescent pseudomonads, were previously shown to promote iron nutrition of the dicotyledonous species Arabidopsis thaliana L. (Heynh.), whereas contradictory reports were made on the contribution of those siderophores to the nutrition of graminaceous annuals. Furthermore, no information has so far been available on graminaceous perennials. Here, the contribution of purified pyoverdine of Pseudomonas fluorescens C7R12 to the iron nutrition of two annual and perennial graminaceous plants was assessed and compared with that of two dicotyledonous plant species. Fe–Pyoverdine promoted the iron status of all plant species tested. With the exception of wheat, this promotion was more dramatic in graminaceous species than in dicotyledonous species and was the highest in fescue, a perennial species. The incorporation of 15N-labeled pyoverdine was consistent with the effect on the iron status of the plants tested.


2011 ◽  
Vol 108 ◽  
pp. 251-256
Author(s):  
Yan Zhai Song ◽  
Shuang Liu ◽  
Mei Wen ◽  
Wei Huang ◽  
Xiang Li Song ◽  
...  

Trehalose (α-D-glucopyranosyl-1,1-α-D-glucopyranoside) is a non-reducing disaccharide. It is currently thought that just trace level of trehalose was detected in plants, and that trehalose metabolic pathway was significantly related to stress tolerance. In this study, we report that expression levels of three genes with regard to trehalose metabolic pathway were measured in Arabidopsis thaliana, including AtTPS1, AtTPPA and AtTRE1. As a result, transcriptional levels of these genes are the highest in floral organ, and the expression of AtTRE1 is much more than AtTPS1 and AtTPPA. Additionally, we present transcriptional response analyses in drought and heat stresses, which have shown the changes of these genes expression from tolerance in early stress to senescence in later stress.


2021 ◽  
Author(s):  
Kevin ROBE ◽  
max STASSEN ◽  
joseph CHAMIEH ◽  
philippe GONZALEZ ◽  
sonia HEM ◽  
...  

Iron (Fe) is a micronutrient essential for plant growth and development. Iron uptake in alkaline soil is a challenge for most plants. In this study, we investigated the role of the catechol coumarins fraxetin and esculetin in plant Fe acquisition and their Fe chelating properties. Mass spectrometry and capillary electrophoresis were used to characterize Fe-coumarin complexes. To understand the role of these complexes, genetic, molecular and biochemical approaches were deployed. We demonstrated that catechol coumarins are taken up by Arabidopsis thaliana root via an ATP dependent mechanism and that plants defective in IRT1 activity (the main high affinity Fe importer) or bHLH121 (a key regulator of Fe deficiency responses) can be complemented by exogenous supply of fraxetin and to a lesser extent of esculetin. We also showed that Fe and fraxetin can form stable complexes at neutral to alkaline pH that can be taken up by the plant. Overall, these results indicate that at high pH, fraxetin can improve Fe nutrition by directly transporting Fe(III) into the root, circumventing the FRO2/IRT1 system, in a similar way as phytosiderophores do in grasses. This strategy may explain how non-grass species can thrive in alkaline soils.


Cell Research ◽  
2005 ◽  
Vol 15 (8) ◽  
pp. 613-621 ◽  
Author(s):  
You Xi YUAN ◽  
Juan ZHANG ◽  
Dao Wen WANG ◽  
Hong Qing LING

2021 ◽  
Author(s):  
Yoshiaki Kato ◽  
Teruhide Hoshino ◽  
Yudai Ogawa ◽  
Keisuke Sugahara ◽  
Akira Katakura

Abstract Frailty is a vulnerable state that marks the transition to long-term care for the elders. Recently, the relationship between frailty and oral function has been attracting attention. By clarifying the specific metabolic changes in the masseter muscle, we aimed to contribute to maintenance of masticatory function. The purpose of this study is to clarify the changes in masseter muscle of senescence-accelerated mouse-prone 8 (SAMP8) mice metabolites and metabolic pathways due to aging. Capillary electrophoresis-mass spectrometry metabolome analysis was performed on the masseter muscle of 12-week-old, 40-week-old, and 55-week-old mice. Expression analysis was performed by reverse transcription polymerase chain reaction (RT-PCR) and immunofluorescence for the metabolome pathways extracted by metabolome analysis that considered to be related to aging. Nineteen metabolites had a significant difference in absolute quantitative values and were considered to affect the first principal component by factor loading. The extracted metabolic pathways were glycolysis, polyamine metabolome pathway, and purine metabolome pathway. RT-PCR was performed on the extracted metabolome pathways. Expression of the spermidine synthase and hypoxanthine phosphoribosyl transferase genes with significant differences by RT-PCR was confirmed by immunofluorescence. The metabolic pathways considered to be related to aging in masseter muscle were glycolysis, polyamine metabolic pathway, and purine metabolic pathway.


Metabolites ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 391
Author(s):  
Stefan Timm ◽  
Adriano Nunes-Nesi ◽  
Alexandra Florian ◽  
Marion Eisenhut ◽  
Katja Morgenthal ◽  
...  

Photorespiration is an integral component of plant primary metabolism. Accordingly, it has been often observed that impairing the photorespiratory flux negatively impacts other cellular processes. In this study, the metabolic acclimation of the Arabidopsis thaliana wild type was compared with the hydroxypyruvate reductase 1 (HPR1; hpr1) mutant, displaying only a moderately reduced photorespiratory flux. Plants were analyzed during development and under varying photoperiods with a combination of non-targeted and targeted metabolome analysis, as well as 13C- and 14C-labeling approaches. The results showed that HPR1 deficiency is more critical for photorespiration during the vegetative compared to the regenerative growth phase. A shorter photoperiod seems to slowdown the photorespiratory metabolite conversion mostly at the glycerate kinase and glycine decarboxylase steps compared to long days. It is demonstrated that even a moderate impairment of photorespiration severely reduces the leaf-carbohydrate status and impacts on sulfur metabolism. Isotope labeling approaches revealed an increased CO2 release from hpr1 leaves, most likely occurring from enhanced non-enzymatic 3-hydroxypyruvate decarboxylation and a higher flux from serine towards ethanolamine through serine decarboxylase. Collectively, the study provides evidence that the moderate hpr1 mutant is an excellent tool to unravel the underlying mechanisms governing the regulation of metabolic linkages of photorespiration with plant primary metabolism.


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