Data, Statistics, and Controversy: Making Science Research Data Intelligible

2012 ◽  
Vol 3 (1) ◽  
Author(s):  
Nell Sedransk ◽  
Linda J. Young ◽  
Cliff Spiegelman

Making published, scientific research data publicly available can benefit scientists and policy makers only if there is sufficient information for these data to be intelligible. Thus the necessary meta-data go beyond the scientific, technological detail and extend to the statistical approach and methodologies applied to these data. The statistical principles that give integrity to researchers’ analyses and interpretations of their data require documentation. This is true when the intent is to verify or validate the published research findings; it is equally true when the intent is to utilize the scientific data in conjunction with other data or new experimental data to explore complex questions; and it is profoundly important when the scientific results and interpretations are taken outside the world of science to establish a basis for policy, for legal precedent or for decision-making. When research draws on already public data bases, e.g., a large federal statistical data base or a large scientific data base, selection of data for analysis, whether by selection (subsampling) or by aggregating, is specific to that research so that this (statistical) methodology is a crucial part of the meta-data. Examples illustrate the role of statistical meta-data in the use and reuse of these public datasets and the impact on public policy and precedent.

2021 ◽  
Author(s):  
Richard Wessels ◽  
Thijmen Kok ◽  
Hans van Melick ◽  
Martyn Drury

<p>Publishing research data in a Findable, Accessible, Interoperable, and Reusable (FAIR) manner is increasingly valued and nowadays often required by publishers and funders. Because experimental research data provide the backbone for scientific publications, it is important to publish this data as FAIRly as possible to enable reuse and citation of the data, thereby increasing the impact of research.</p><p>The structural geology group at Utrecht University is collaborating with the EarthCube-funded StraboSpot initiative to develop (meta)data schemas, templates and workflows, to support researchers in collecting and publishing petrological and microstructural data. This data will be made available in a FAIR manner through the EPOS (European Plate Observing System) data publication chain <span xml:lang="EN-GB"><span>(https://epos-msl.uu.nl/</span></span><span xml:lang="EN-GB"><span>)</span></span><span xml:lang="EN-GB"><span>.</span></span></p><p>The data workflow under development currently includes: a) collecting structural field (meta)data compliant with the StraboSpot protocols, b) creating thin sections oriented in three dimensions by applying a notch system (Tikoff et al., 2019), c) scanning and digitizing thin sections using a high-resolution scanner, d) automated mineralogy through EDS on a SEM, and e) high-resolution geochemistry using a microprobe. The purpose of this workflow is to be able to track geochemical and structural measurements and observations throughout the analytical process.</p><p>This workflow is applied to samples from the Cap de Creus region in northeast Spain. Located in the axial zone of the Pyrenees, the pre-Cambrian metasediments underwent HT-LP greenschist- to amphibolite-facies metamorphism, are intruded by pegmatitic bodies, and transected by greenschist-facies shear zones. Cap de Creus is a natural laboratory for studying the deformation history of the Pyrenees, and samples from the region are ideal to test and refine the data workflow. In particular, the geochemical data collected under this workflow is used as input for modelling the bulk rock composition using Perple_X.    </p><p>In the near future the workflow will be complimented by adding unique identifiers to the collected samples using IGSN (International Geo Sample Number), and by incorporating a StraboSpot-developed application for microscopy-based image correlation. This workflow will be refined and included in the broader correlative microscopy workflow that will be applied in the upcoming EXCITE project, an H2020-funded European collaboration of electron and x-ray microscopy facilities and researchers aimed at structural and chemical imaging of earth materials. </p>


2019 ◽  
Vol 214 ◽  
pp. 06034 ◽  
Author(s):  
Tibor Šimko ◽  
Lukas Heinrich ◽  
Harri Hirvonsalo ◽  
Dinos Kousidis ◽  
Diego Rodríguez

The revalidation, reinterpretation and reuse of research data analyses requires having access to the original computing environment, the experimental datasets, the analysis software, and the computational workflow steps which were used by researchers to produce the original scientific results in the first place. REANA (Reusable Analyses) is a nascent platform enabling researchers to structure their research data analyses in view of enabling future reuse. The analysis is described by means of a YAML file that captures sufficient information about the analysis assets, parameters and processes. The REANA platform consists of a set of micro-services allowing to launch and monitor container-based computational workflow jobs on the cloud. The REANA user interface and the command-line client enables researchers to easily rerun analysis workflows with new input parameters. The REANA platform aims at supporting several container technologies (Docker), workflow engines (CWL, Yadage), shared storage systems (Ceph, EOS) and compute cloud infrastructures (Ku-bernetes/OpenStack, HTCondor) used by the community. REANA was developed with the particle physics use case in mind and profits from synergies with general reusable research data analysis patterns in other scientific disciplines, such as bioinformatics and life sciences.


2020 ◽  
Author(s):  
Graham Smith ◽  
Andrew Hufton

<p>Researchers are increasingly expected by funders and journals to make their data available for reuse as a condition of publication. At Springer Nature, we feel that publishers must support researchers in meeting these additional requirements, and must recognise the distinct opportunities data holds as a research output. Here, we outline some of the varied ways that Springer Nature supports research data sharing and report on key outcomes.</p><p>Our staff and journals are closely involved with community-led efforts, like the Enabling FAIR Data initiative and the COPDESS 2014 Statement of Commitment <sup>1-4</sup>. The Enabling FAIR Data initiative, which was endorsed in January 2019 by <em>Nature</em> and <em>Scientific Data</em>, and by <em>Nature Geoscience</em> in January 2020, establishes a clear expectation that Earth and environmental sciences data should be deposited in FAIR<sup>5</sup> Data-aligned community repositories, when available (and in general purpose repositories otherwise). In support of this endorsement, <em>Nature</em> and <em>Nature Geoscience</em> require authors to share and deposit their Earth and environmental science data, and <em>Scientific Data</em> has committed to progressively updating its list of recommended data repositories to help authors comply with this mandate.</p><p>In addition, we offer a range of research data services, with various levels of support available to researchers in terms of data curation, expert guidance on repositories and linking research data and publications.</p><p>We appreciate that researchers face potentially challenging requirements in terms of the ‘what’, ‘where’ and ‘how’ of sharing research data. This can be particularly difficult for researchers to negotiate given that huge diversity of policies across different journals. We have therefore developed a series of standardised data policies, which have now been adopted by more than 1,600 Springer Nature journals. </p><p>We believe that these initiatives make important strides in challenging the current replication crisis and addressing the economic<sup>6</sup> and societal consequences of data unavailability. They also offer an opportunity to drive change in how academic credit is measured, through the recognition of a wider range of research outputs than articles and their citations alone. As signatories of the San Francisco Declaration on Research Assessment<sup>7</sup>, Nature Research is committed to improving the methods of evaluating scholarly research. Research data in this context offers new mechanisms to measure the impact of all research outputs. To this end, Springer Nature supports the publication of peer-reviewed data papers through journals like <em>Scientific Data</em>. Analysis of citation patterns demonstrate that data papers can be well-cited, and offer a viable way for researchers to receive credit for data sharing through traditional citation metrics. Springer Nature is also working hard to improve support for direct data citation. In 2018 a data citation roadmap developed by the Publishers Early Adopters Expert Group was published in <em>Scientific Data</em><sup>8</sup>, outlining practical steps for publishers to work with data citations and associated benefits in transparency and credit for researchers. Using examples from this roadmap, its implementation and supporting services, we outline how a FAIR-led data approach from publishers can help researchers in the Earth and environmental sciences to capitalise on new expectations around data sharing.</p><p>__</p><ol><li>https://doi.org/10.1038/d41586-019-00075-3</li> <li>https://doi.org/10.1038/s41561-019-0506-4</li> <li>https://copdess.org/enabling-fair-data-project/commitment-statement-in-the-earth-space-and-environmental-sciences/</li> <li>https://copdess.org/statement-of-commitment/</li> <li>https://www.force11.org/group/fairgroup/fairprinciples</li> <li>https://op.europa.eu/en/publication-detail/-/publication/d375368c-1a0a-11e9-8d04-01aa75ed71a1</li> <li>https://sfdora.org/read/</li> <li>https://doi.org/10.1038/sdata.2018.259</li> </ol>


2021 ◽  
Vol 6 (3) ◽  
pp. 168-173
Author(s):  
Mariia Korbut ◽  
◽  
Myroslav Malovanyy ◽  
Kateryna Petrushka ◽  
Wojciech Lutek ◽  
...  

The study, using a survey, found social attitudes towards the separate collection and problematic issues that may hinder its implementation. It was found that most respondents are not familiar with the possibilities of waste composting at home, and residents of multi-storey buildings generally consider composting at home in the kitchen inexpedient. The paper identified the causes of ignorance of the population on household composting conditions. The paper presents the scientific results of the popularization of composting with microbiological additives at home among the population. The study aimed to develop a practical, effective model for the management of the bioorganic component of municipal solid waste, which minimizes the impact of waste on the environment and maximizes resource potential by organizing composting organic waste at home. Based on the research data, recommendations for the population of Zhytomyr on composting household waste have been developed. They explain in detail the mechanism of composting at home and outline the benefits of such composting. The obtained results are practical, they can be used for explanatory work among the population and the development of recommendations on separate waste collecting and composting of the organic part of household waste in domestic conditions.


2019 ◽  
Vol 10 (2-3) ◽  
pp. 142-155
Author(s):  
James P. Anglin ◽  
Angela Scott

Seldom do researchers comment on or discuss in their publications the impact of their research on themselves, nor do they explore the impact of their emotions on their research data gathering or findings. The authors provide excerpts from two of their own research studies to illustrate some of the personal dimensions which they, along with George Devereux, claim are central and significant in the process of social science research. We suggest that is it is important to introduce new researchers to the psychoemotional dimensions of the researcher’s own experiences in the research process in order to both sensitize them to potential research findings (often hidden), and prepare them for the possible (even likely) impacts on themselves as researchers, professionals, and human beings.


Coronaviruses ◽  
2020 ◽  
Vol 01 ◽  
Author(s):  
Yam Nath Paudel ◽  
Efthalia Angelopoulou ◽  
Bhupendra Raj Giri ◽  
Christina Piperi ◽  
Iekhsan Othman ◽  
...  

: COVID-19 has emerged as a devastating pandemic of the century that the current generations have ever experienced. The COVID-19 pandemic has infected more than 12 million people around the globe and 0.5 million people have succumbed to death. Due to the lack of effective vaccines against the COVID-19, several nations throughout the globe has imposed a lock-down as a preventive measure to lower the spread of COVID-19 infection. As a result of lock-down most of the universities and research institutes has witnessed a long pause in basic science research ever. Much has been talked about the long-term impact of COVID-19 in economy, tourism, public health, small and large-scale business of several kind. However, the long-term implication of these research lab shutdown and its impact in the basic science research has not been much focused. Herein, we provide a perspective that portrays a common problem of all the basic science researchers throughout the globe and its long-term consequences.


Antioxidants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 188
Author(s):  
Małgorzata Makarewicz ◽  
Iwona Drożdż ◽  
Tomasz Tarko ◽  
Aleksandra Duda-Chodak

This review presents the comprehensive knowledge about the bidirectional relationship between polyphenols and the gut microbiome. The first part is related to polyphenols’ impacts on various microorganisms, especially bacteria, and their influence on intestinal pathogens. The research data on the mechanisms of polyphenol action were collected together and organized. The impact of various polyphenols groups on intestinal bacteria both on the whole “microbiota” and on particular species, including probiotics, are presented. Moreover, the impact of polyphenols present in food (bound to the matrix) was compared with the purified polyphenols (such as in dietary supplements) as well as polyphenols in the form of derivatives (such as glycosides) with those in the form of aglycones. The second part of the paper discusses in detail the mechanisms (pathways) and the role of bacterial biotransformation of the most important groups of polyphenols, including the production of bioactive metabolites with a significant impact on the human organism (both positive and negative).


2021 ◽  
Vol 11 (10) ◽  
pp. 4703
Author(s):  
Renato Andara ◽  
Jesús Ortego-Osa ◽  
Melva Inés Gómez-Caicedo ◽  
Rodrigo Ramírez-Pisco ◽  
Luis Manuel Navas-Gracia ◽  
...  

This comparative study analyzes the impact of the COVID-19 pandemic on motorized mobility in eight large cities of five Latin American countries. Public institutions and private organizations have made public data available for a better understanding of the contagion process of the pandemic, its impact, and the effectiveness of the implemented health control measures. In this research, data from the IDB Invest Dashboard were used for traffic congestion as well as data from the Moovit© public transport platform. For the daily cases of COVID-19 contagion, those published by Johns Hopkins Hospital University were used. The analysis period corresponds from 9 March to 30 September 2020, approximately seven months. For each city, a descriptive statistical analysis of the loss and subsequent recovery of motorized mobility was carried out, evaluated in terms of traffic congestion and urban transport through the corresponding regression models. The recovery of traffic congestion occurs earlier and faster than that of urban transport since the latter depends on the control measures imposed in each city. Public transportation does not appear to have been a determining factor in the spread of the pandemic in Latin American cities.


2021 ◽  
Vol 10 (3) ◽  
pp. 154
Author(s):  
Robert Jeansoulin

Providing long-term data about the evolution of railway networks in Europe may help us understand how European Union (EU) member states behave in the long-term, and how they can comply with present EU recommendations. This paper proposes a methodology for collecting data about railway stations, at the maximal extent of the French railway network, a century ago.The expected outcome is a geocoded dataset of French railway stations (gares), which: (a) links gares to each other, (b) links gares with French communes, the basic administrative level for statistical information. Present stations are well documented in public data, but thousands of past stations are sparsely recorded, not geocoded, and often ignored, except in volunteer geographic information (VGI), either collaboratively through Wikipedia or individually. VGI is very valuable in keeping track of that heritage, and remote sensing, including aerial photography is often the last chance to obtain precise locations. The approach is a series of steps: (1) meta-analysis of the public datasets, (2) three-steps fusion: measure-decision-combination, between public datasets, (3) computer-assisted geocoding for ‘gares’ where fusion fails, (4) integration of additional gares gathered from VGI, (5) automated quality control, indicating where quality is questionable. These five families of methods, form a comprehensive computer-assisted reconstruction process (CARP), which constitutes the core of this paper. The outcome is a reliable dataset—in geojson format under open license—encompassing (by January 2021) more than 10,700 items linked to about 7500 of the 35,500 communes of France: that is 60% more than recorded before. This work demonstrates: (a) it is possible to reconstruct transport data from the past, at a national scale; (b) the value of remote sensing and of VGI is considerable in completing public sources from an historical perspective; (c) data quality can be monitored all along the process and (d) the geocoded outcome is ready for a large variety of further studies with statistical data (demography, density, space coverage, CO2 simulation, environmental policies, etc.).


1983 ◽  
Vol 38 ◽  
pp. 4-6
Author(s):  
Philip A. Schrodt

The computer has revolutionized the use of statistical techniques in social science research. In recent years microcomputers have begun to replace large mainframe computers in such applications as word processing, accounting and data base management. While the use of microcomputers as statistical processors is still in its infancy, and existing software leaves a lot to be desired, the economics and convenience of statistical work on microcomputers point to an increasing role for micros in this area.This article will survey the costs and benefits of doing statistical work with microcomputers. It is not a discussion of individual statistical programs but instead focuses on the general issues of what you need and what you can expect to do.


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